TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0301a.2
         (80 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Ni...    91  3e-20
AV778027                                                               55  3e-09
BP044890                                                               25  2.0
AV781245                                                               24  5.8
TC10588 similar to UP|Q9LPU4 (Q9LPU4) T22I11.8, partial (36%)          24  5.8
CN825379                                                               23  7.5
TC12537 weakly similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-r...    23  7.5
TC10446 similar to UP|Q8GTR1 (Q8GTR1) Geranylgeranyl diphosphate...    23  9.8
TC10203 similar to UP|Q7X833 (Q7X833) Cytosolic phosphoglucose i...    23  9.8

>TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Nicotiana
            tabacum;}, complete
          Length = 6897

 Score = 91.3 bits (225), Expect = 3e-20
 Identities = 44/46 (95%), Positives = 44/46 (95%)
 Frame = +1

Query: 1    FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
            F LLIHRQRWLR NNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD
Sbjct: 6670 FELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 6807


>AV778027 
          Length = 505

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 29/30 (96%), Positives = 30/30 (99%)
 Frame = +2

Query: 46  DNTKMK*IIENSRGR*GSR*RQMSRLDILA 75
           +NTKMK*IIENSRGR*GSR*RQMSRLDILA
Sbjct: 194 NNTKMK*IIENSRGR*GSR*RQMSRLDILA 283


>BP044890 
          Length = 558

 Score = 25.4 bits (54), Expect = 2.0
 Identities = 13/45 (28%), Positives = 27/45 (59%), Gaps = 4/45 (8%)
 Frame = +2

Query: 10  WLRPNNSLSNGFFRSNT----LSESYQYLSNMFLSNGTLLDNTKM 50
           W RP+  +   FFR++T     S S+ +L + F+S+ ++L ++ +
Sbjct: 215 WERPSLIIFKPFFRNSTPLLIPSRSFLFLFDGFMSSTSMLSHSSL 349


>AV781245 
          Length = 523

 Score = 23.9 bits (50), Expect = 5.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 1   FLLLIHRQRWLRPNNSLSNGFFRS 24
           F+ L+H++ W+ PN  +++   RS
Sbjct: 389 FISLLHQE*WVSPNKPVASPLSRS 460


>TC10588 similar to UP|Q9LPU4 (Q9LPU4) T22I11.8, partial (36%)
          Length = 976

 Score = 23.9 bits (50), Expect = 5.8
 Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
 Frame = +3

Query: 1   FLLLIHRQRWLRPN-----NSLSNGFFRSNTLSESYQYLSNMFLS 40
           + LL+H Q+WL  N      +   GFF S++ +  ++  S  + S
Sbjct: 282 WFLLLHLQQWLAQNMPKFSEASYKGFFSSSSTTTRFRSDSRTYSS 416


>CN825379 
          Length = 646

 Score = 23.5 bits (49), Expect = 7.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 1   FLLLIHRQRWLRPNNSLSNGFFRSNTL 27
           ++L + R+RWL+   ++ + FFR   L
Sbjct: 174 WVLRLRRRRWLQSEPTVESPFFRRRWL 94


>TC12537 weakly similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich
           protein, partial (8%)
          Length = 444

 Score = 23.5 bits (49), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
 Frame = +2

Query: 14  NNSLSNGF-FRSNTLSESYQYLSNMFLSNGTLLDNTK 49
           +N  S GF FRS+ +  SY+  +    SNG  +D +K
Sbjct: 305 SNCSSKGFDFRSDDVLCSYEDFTEQDSSNGNNIDPSK 415


>TC10446 similar to UP|Q8GTR1 (Q8GTR1) Geranylgeranyl diphosphate synthase,
           partial (54%)
          Length = 999

 Score = 23.1 bits (48), Expect = 9.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 4   LIHRQRWLRPNNSLSNGFFRSNTLSE 29
           L+HR+++   NNS+SN   R  TLS+
Sbjct: 473 LLHRKQYWSSNNSMSN--VR*RTLSK 402


>TC10203 similar to UP|Q7X833 (Q7X833) Cytosolic phosphoglucose isomerase,
           partial (43%)
          Length = 851

 Score = 23.1 bits (48), Expect = 9.8
 Identities = 10/17 (58%), Positives = 13/17 (75%), Gaps = 2/17 (11%)
 Frame = +3

Query: 6   HRQRWLRPNNS--LSNG 20
           H+Q+WL P +S  LSNG
Sbjct: 102 HKQKWLHPLSSLTLSNG 152


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.350    0.154    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,121,289
Number of Sequences: 28460
Number of extensions: 10223
Number of successful extensions: 132
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of query: 80
length of database: 4,897,600
effective HSP length: 56
effective length of query: 24
effective length of database: 3,303,840
effective search space: 79292160
effective search space used: 79292160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 48 (23.1 bits)