BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0299.5
(547 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780445 85 2e-25
TC19596 99 1e-21
BP068806 82 2e-16
AV407204 80 1e-15
BP076564 70 9e-13
BE122611 47 4e-10
AV411435 59 2e-09
BP062688 54 5e-08
BP056414 50 9e-07
AV407392 48 5e-06
BP081809 47 8e-06
BP069214 47 1e-05
BP028574 44 5e-05
AV412895 44 9e-05
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 44 9e-05
BP066140 42 2e-04
CN825238 42 3e-04
BI418523 41 4e-04
AV428268 39 0.002
BP053073 39 0.002
>AV780445
Length = 504
Score = 85.1 bits (209), Expect(2) = 2e-25
Identities = 38/98 (38%), Positives = 56/98 (56%), Gaps = 4/98 (4%)
Frame = +1
Query: 326 HGIQFLAGVWGAWKWRCNWLLDSQRWPIEVVWRRIAHDHDDWAWCAPSN----DLLLCHP 381
+ ++ LAGVW WKWR N + + W ++ WR++ H+HD++ + + L
Sbjct: 211 NSVKCLAGVW*VWKWRNNMVFEDSPWSVDEAWRKLGHEHDEFITFSDGDAGDPGSWLSSR 390
Query: 382 WSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWV 419
W PP TVK N DGS RE + MG G+IRD QG+W+
Sbjct: 391 WQPPRQGTVKLNVDGSGREQDRCMGAGGLIRDDQGKWL 504
Score = 47.8 bits (112), Expect(2) = 2e-25
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 276 RCGNVVEDGLHCLRDCSFS*DLWRRMGAINWRNFRYNNIISWFSSMARGV 325
RC ED HCLRDC S ++W R+GA W N + SW SS+ G+
Sbjct: 65 RCPAPEEDI*HCLRDCPHSQEIWLRLGAWAWTNLGVGDHRSWISSLELGI 214
>TC19596
Length = 499
Score = 99.4 bits (246), Expect = 1e-21
Identities = 57/154 (37%), Positives = 87/154 (56%)
Frame = +1
Query: 391 KCNSDGSFREDVQRMGGVGVIRDHQGRWVAGCYLGEAAGNAFRAEAKALLDVLELAWNRG 450
+ +SDG+F+ D RMG G++RD G W++G Y G G+A RAE AL L L WN
Sbjct: 4 RMDSDGAFKHDDDRMGMGGIVRDAHGAWISGFYAGSLGGDALRAEIAALKHGLTLLWNAH 183
Query: 451 YSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVHRDSNAVADH 510
R C+V+C ++V L E + Q H+ L I LL RDW V + V R++NA AD
Sbjct: 184 VRRATCEVDCLDIVEAL-ENDRYQFHALASELLDIRLLLDRDWTVTLAYVPREANAAADC 360
Query: 511 LVRRGAAAMSSES*IIQSQDHDVEYLLLKDSLSI 544
L GA+ + + ++S +++ +L +D L++
Sbjct: 361 LAGLGASLLCPLT-CLESPPQELQPILARDLLAL 459
>BP068806
Length = 418
Score = 82.0 bits (201), Expect = 2e-16
Identities = 37/86 (43%), Positives = 50/86 (58%)
Frame = +3
Query: 241 VPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLWRR 300
VPEKIR++ W ++ AI VN RC LA+ RC + ED HCLRDC + D+W R
Sbjct: 150 VPEKIRVWVWFIMQGAIQVNSFRFRCKLATSPAGPRCQHQFEDIWHCLRDCRIARDVWVR 329
Query: 301 MGAINWRNFRYNNIISWFSSMARGVH 326
+ A+ W F +N +W S A+G H
Sbjct: 330 LNALGWPGFFVSNAQAWVKSQAQGPH 407
>AV407204
Length = 432
Score = 79.7 bits (195), Expect = 1e-15
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Frame = -2
Query: 417 RWVAGC---YLGEAAGNAFRAEAKALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAV 473
+WV G YL EAA +F AEA AL D L LAW+ G +L+C+ +C L+ + +
Sbjct: 431 KWVNGFISQYL-EAASCSFLAEALALRDGLRLAWDNGTRKLVCNSDCKELIDAIADPSRA 255
Query: 474 QMHSEFHVLHSITQLLARDWHVRINSVHRDSNAVADHLVRRGAAAMSSES*IIQSQDHDV 533
H+ VL I L+ R+W V + RD N VAD L +RG+ + + + ++
Sbjct: 254 SFHAHGWVLREIHALMTRNWRVELFWCCRDVNMVADCLAKRGSLLPVAGYSALATPSPEL 75
Query: 534 EYLLLKDSLSIP*F 547
E LLLKD + *F
Sbjct: 74 EVLLLKDIIGFS*F 33
>BP076564
Length = 371
Score = 70.1 bits (170), Expect = 9e-13
Identities = 34/105 (32%), Positives = 56/105 (52%)
Frame = +2
Query: 239 LRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
L+V EK + LH A+P+N C +A+ C RC V+D LHCL+DC S ++W
Sbjct: 56 LKVVEKCKFMVGLGLHQALPINARRHACSMAATGGCGRCSAAVKDILHCLQDCPHSREVW 235
Query: 299 RRMGAINWRNFRYNNIISWFSSMARGVHGIQFLAGVWGAWKWRCN 343
R+G ++ F ++ SW S+ + + + + +W W+ R N
Sbjct: 236 NRLGCSSFGGFLSSDGWSWLLSIMKQPNVEKLIYILWWIWR*RNN 370
>BE122611
Length = 357
Score = 47.4 bits (111), Expect(2) = 4e-10
Identities = 24/62 (38%), Positives = 32/62 (50%)
Frame = -3
Query: 199 DAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIP 258
D +W + S+G YS + Y + N E R + VWK PEK+R F W V NA+P
Sbjct: 331 DRILWTEESNGCYSAKSTYNLLIEDGGN--ESRFWSLVWKANAPEKVRFFLWLVGRNALP 158
Query: 259 VN 260
N
Sbjct: 157 SN 152
Score = 33.9 bits (76), Expect(2) = 4e-10
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -2
Query: 267 HLASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
HLAS A C RCG ED H R C S +W
Sbjct: 134 HLASSAACIRCGAPSEDANHVFRWCPGSAWMW 39
>AV411435
Length = 426
Score = 58.9 bits (141), Expect = 2e-09
Identities = 34/110 (30%), Positives = 50/110 (44%), Gaps = 9/110 (8%)
Frame = +3
Query: 198 EDAWIWKDGSSGRYSVRDAYEWI-------NHLAHNPIEDRKLNW--VWKLRVPEKIRMF 248
ED W SG YSV+ Y + ++LA + W +W +VP+K+R F
Sbjct: 36 EDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSF 215
Query: 249 TWQVLHNAIPVNELWVRCHLASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
W+ +NAIPV R ++ D C C ED H L C ++ +W
Sbjct: 216 LWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW 365
>BP062688
Length = 536
Score = 54.3 bits (129), Expect = 5e-08
Identities = 27/65 (41%), Positives = 36/65 (54%)
Frame = -1
Query: 447 WNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVHRDSNA 506
W G+ ++C V+C L +L VQ + V+ I +LAR W+V IN V RD NA
Sbjct: 365 WELGFLHVVCYVDCLELQEVLTSTRDVQTYWHRDVIEMIRAVLARSWNVTINHVTRDGNA 186
Query: 507 VADHL 511
VAD L
Sbjct: 185 VADAL 171
>BP056414
Length = 606
Score = 50.1 bits (118), Expect = 9e-07
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Frame = -3
Query: 382 WSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWVAGCYLGEAAG-----NAFRAEA 436
W+ PP K N DG+ D+Q G GV+RD G W G + G AF E
Sbjct: 562 WTRPPEGWFKVNVDGALSGDLQASCG-GVVRDAAGSWSKG--FARSLGVLRWHXAFFVEL 392
Query: 437 KALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVR 496
A+ ++ + ++I + + +V +L A H + I Q ++ +
Sbjct: 391 MAVQTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQYGEIAWDIQQKISVHGSIV 212
Query: 497 INSVHRDSNAVADHLVRRG 515
I S R++N +AD+L + G
Sbjct: 211 ITSTPREANFLADYLAKVG 155
>AV407392
Length = 407
Score = 47.8 bits (112), Expect = 5e-06
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +1
Query: 446 AWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVHRDSN 505
A RG RL+C+ +C +LV+ILV+ E+V+ H +L+ I ++ +W V + + N
Sbjct: 4 AGKRGDCRLLCESDCLDLVSILVDIESVRAHVHCSILNEIQGMICWNWRVEL---AHEGN 174
Query: 506 AVADHLVR 513
VAD L R
Sbjct: 175 VVADWLAR 198
>BP081809
Length = 299
Score = 47.0 bits (110), Expect = 8e-06
Identities = 26/67 (38%), Positives = 38/67 (55%)
Frame = -1
Query: 481 VLHSITQLLARDWHVRINSVHRDSNAVADHLVRRGAAAMSSES*IIQSQDHDVEYLLLKD 540
VL I +LL R W +N + RD N D+L RRG + SS + + +++LLLKD
Sbjct: 296 VLGEIHELLNRSWRCIMNWISRDGNGPTDYLARRGGFSSSSGVRELDAPPPKLDHLLLKD 117
Query: 541 SLSIP*F 547
L++ *F
Sbjct: 116 KLTLR*F 96
>BP069214
Length = 545
Score = 46.6 bits (109), Expect = 1e-05
Identities = 24/82 (29%), Positives = 45/82 (54%)
Frame = -2
Query: 435 EAKALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWH 494
E A+ L+L W+RG+ ++IC + + +++ + H ++ SI LL+R+W
Sbjct: 394 ELLAMWHGLDLVWDRGFRQVICQSDSTEALALVLGVPPPR-HRYAALIWSIKDLLSREWE 218
Query: 495 VRINSVHRDSNAVADHLVRRGA 516
V + + R+ N+ AD L + GA
Sbjct: 217 VSMTHMLREGNSCADFLAKYGA 152
>BP028574
Length = 454
Score = 44.3 bits (103), Expect = 5e-05
Identities = 20/66 (30%), Positives = 33/66 (49%)
Frame = +3
Query: 193 ICMNREDAWIWKDGSSGRYSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQV 252
+ +N D+W+W SG ++V+ AYE + H IED +W+ + P W+V
Sbjct: 243 LSINHRDSWVWIKDGSGSFTVKSAYEEL-HGEIQEIEDNFFRKLWQSKAPSNSIALAWRV 419
Query: 253 LHNAIP 258
N +P
Sbjct: 420 GLNRVP 437
>AV412895
Length = 405
Score = 43.5 bits (101), Expect = 9e-05
Identities = 28/94 (29%), Positives = 43/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 209 GRYSVRDAYEWI-NHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVR-- 265
G +SV ++ ++ + P D N +W + P I+ F W+VL I + ++
Sbjct: 4 GGFSVNSSFVFL*DQYLEEP--DPVFN*IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQ 177
Query: 266 -CHLASDATCARCGNVVEDGLHCLRDCSFS*DLW 298
H A DA C CG E G H L C+ S +W
Sbjct: 178 VIHNALDAICPLCGLAEESGSHLLFSCAESMLIW 279
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 43.5 bits (101), Expect = 9e-05
Identities = 27/83 (32%), Positives = 41/83 (48%)
Frame = -3
Query: 382 WSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWVAGCYLGEAAGNAFRAEAKALLD 441
W PPP K NSD S++ VIRD+ G ++G A + +EA AL +
Sbjct: 795 WRPPPLGVYKLNSDASWKAPSPSCTVGVVIRDNLGLLISGTASRPLAPSPIVSEALALRE 616
Query: 442 VLELAWNRGYSRLICDVNCDNLV 464
L LA + G R++ + +C L+
Sbjct: 615 GLILARSLGLDRILSESDCQPLI 547
>BP066140
Length = 320
Score = 42.4 bits (98), Expect = 2e-04
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -2
Query: 443 LELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARDWHVRINSVHR 502
L LAW RG +L+C +C+++V L + + S L L+ +W + HR
Sbjct: 313 LSLAWERGIRKLLCISDCEDVVKALTGLGSFHLDSWAAYLAEARSLIHPEWECLLLPHHR 134
Query: 503 DSNAVADHLVRRG 515
+ N AD L + G
Sbjct: 133 ERNKPADALAKLG 95
>CN825238
Length = 692
Score = 42.0 bits (97), Expect = 3e-04
Identities = 27/123 (21%), Positives = 52/123 (41%), Gaps = 5/123 (4%)
Frame = +3
Query: 168 KWNLQRLYTNLPHSLQQQFLAVQPQICMNREDAWIWKDGSSGRYSVRDAY---EWINHLA 224
+WN+Q + P ++ P ++ +W+ +G +SVR AY + +
Sbjct: 318 RWNVQLIDQLFPKETAAVIKSI-PLGWRTTRNSCLWRWSRNGAFSVRSAYYNIQVAKEMQ 494
Query: 225 HNPIEDRKLNW--VWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLASDATCARCGNVVE 282
+ W +W+ VP K++ F ++V N IP E R +A C C + +
Sbjct: 495 TSSSAASSFPWKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQNECPTCNHQIP 674
Query: 283 DGL 285
+ +
Sbjct: 675 ESM 683
>BI418523
Length = 496
Score = 41.2 bits (95), Expect = 4e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +1
Query: 379 CHPWSPPPPDTVKCNSDGSFREDVQRMGGVGVIRDHQGRWVAGCYLGEAAGNAFRAEAKA 438
C WSPP +KCN DG+ + + G GV RD + + L G A+ A+ ++
Sbjct: 178 CWSWSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRKILGYFSLNSGNGWAYEAKVRS 357
Query: 439 LLDVL 443
+L+ L
Sbjct: 358 ILNAL 372
>AV428268
Length = 429
Score = 39.3 bits (90), Expect = 0.002
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = +3
Query: 211 YSVRDAYEWINHLAHNPIEDRKLNWVWKLRVPEKIRMFTWQVLHNAIPVNELWVRCHLAS 270
YSV+ AY++++ A N D +W ++VP +W+VL N + R +
Sbjct: 6 YSVKSAYDFLHGCA-NAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVI 182
Query: 271 DATCARCGNVVEDGLHCLRDCSFS*DLWRRM 301
C C E H L C * +W ++
Sbjct: 183 SNVCPLCSLDEESTDHLLFSCPIV*RIWSKI 275
>BP053073
Length = 456
Score = 39.3 bits (90), Expect = 0.002
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = -2
Query: 433 RAEAKALLDVLELAWNRGYSRLICDVNCDNLVTILVEAEAVQMHSEFHVLHSITQLLARD 492
+ E +L L+L W++G R++ + L LV+ + H ++ I LL D
Sbjct: 422 KXELLXMLYGLQL*WSKGVRRMLVFTD-SQLALSLVQLGCDRFHQYAAIVGMIHDLLRFD 246
Query: 493 WHVRINSVHRDSNAVADHLVRRG 515
W V + R+ NAV D L + G
Sbjct: 245 WQVNFRLILREGNAVVDLLAKDG 177
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.332 0.143 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,218,780
Number of Sequences: 28460
Number of extensions: 249895
Number of successful extensions: 1702
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of query: 547
length of database: 4,897,600
effective HSP length: 95
effective length of query: 452
effective length of database: 2,193,900
effective search space: 991642800
effective search space used: 991642800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0299.5