BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0299.13
(259 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP036473 310 2e-85
BP036697 276 2e-75
TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor S... 153 3e-38
TC15305 similar to GB|CAB42557.1|4775270|ATH131214 SF2/ASF-like ... 81 2e-16
TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, part... 73 6e-14
AV773237 70 3e-13
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 68 1e-12
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 64 3e-11
AV420911 61 2e-10
TC18938 similar to UP|AAS00039 (AAS00039) Splicing factor-like p... 52 8e-08
BP047377 52 8e-08
TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprote... 50 3e-07
AV775543 49 7e-07
TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotei... 49 7e-07
TC11685 homologue to UP|PM14_ARATH (Q9FMP4) Pre-mRNA branch site... 47 4e-06
BE122637 47 4e-06
AV413552 44 2e-05
TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprote... 44 2e-05
TC18242 weakly similar to UP|O70495 (O70495) Plenty-of-prolines-... 44 4e-05
TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1... 44 4e-05
>BP036473
Length = 510
Score = 310 bits (793), Expect = 2e-85
Identities = 151/152 (99%), Positives = 151/152 (99%)
Frame = +3
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGP VDIDLKIPPRPPGYAFVQFEDARDAED
Sbjct: 54 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPXVDIDLKIPPRPPGYAFVQFEDARDAED 233
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP
Sbjct: 234 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 413
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGI 152
SASWQDLKDHMRKAGDVCFSQVFRERGGMTGI
Sbjct: 414 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGI 509
>BP036697
Length = 578
Score = 276 bits (707), Expect = 2e-75
Identities = 132/167 (79%), Positives = 147/167 (87%)
Frame = +3
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R+SRT+YVGNLPGDIR REVED+FYK+G I IDLK+PPRPPGYAFV+FED +DAED
Sbjct: 78 MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 257
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AI RDGYDFDG RLRVELAHGGRG+SSS DRYSS+S G RG SRRS+YRVLV+GLP
Sbjct: 258 AIRGRDGYDFDGHRLRVELAHGGRGNSSSRDRYSSHSSGRGGRGVSRRSEYRVLVSGLPS 437
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRK 167
SASWQDLKDHMRKAGDVCFSQVF + G TGIVDYTN+DDMKYA++K
Sbjct: 438 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKK 578
>TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor SF2-like
protein, partial (46%)
Length = 597
Score = 153 bits (386), Expect = 3e-38
Identities = 79/120 (65%), Positives = 92/120 (75%), Gaps = 5/120 (4%)
Frame = +1
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLPGDIR E+EDIFYK+G I+DI+LK+PPRPP Y FV+F++ARDAED
Sbjct: 238 MSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRILDIELKVPPRPPCYCFVEFDNARDAED 417
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDR-YSSYSGGSSSRGA----SRRSDYRVLV 115
AI RDGY+FDG RLRVELAHGGRG +SS R Y GG G SR S++RV+V
Sbjct: 418 AIRGRDGYNFDGCRLRVELAHGGRGPTSSDRRGYGGGGGGGGGGGGRIGLSRNSEFRVIV 597
>TC15305 similar to GB|CAB42557.1|4775270|ATH131214 SF2/ASF-like splicing
modulator Srp30 {Arabidopsis thaliana;} , partial (20%)
Length = 576
Score = 80.9 bits (198), Expect = 2e-16
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 6/108 (5%)
Frame = +1
Query: 156 TNYDDMKYALRKLDDSEFRNAFSRAYIRVREYD--RDYSRSPSRDSRRSYSRSISRSPYL 213
TNYDDMKYA+RKLDD+EF+N ++R YIRV++++ R S S SR +R SRS+ RS +
Sbjct: 1 TNYDDMKYAIRKLDDTEFKNPWARGYIRVKKFESRRSRSLSRSRSPKRVRSRSLDRS--V 174
Query: 214 SRSRSRSRSYSGRSISLSPTAKRSRRLLSLSRCGLLRGSG----NCML 257
SRSRSRSRS S S P ++ R S S + GSG NC +
Sbjct: 175 SRSRSRSRSASPIK-SSRPRSRSKSRSRSASPPQVPSGSG*YSCNCRI 315
>TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (56%)
Length = 598
Score = 72.8 bits (177), Expect = 6e-14
Identities = 69/214 (32%), Positives = 93/214 (43%)
Frame = +1
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVG L R R++E +F ++G + D+D+K YAFV+F D RDA+DA Y DG
Sbjct: 97 LYVGRLSSRTRSRDLERVFSRYGRVRDVDMK-----RDYAFVEFSDPRDADDARYNLDGR 261
Query: 69 DFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPSASWQDLK 128
D DG RL VE A G V R GS G R D + G PP +
Sbjct: 262 DVDGSRLIVEFAKG-------VPR------GSREGGGGRDRDREYMGRGPPPGSG----- 387
Query: 129 DHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRVREYD 188
CF+ G+ G + R +++N R R +
Sbjct: 388 --------RCFN------CGIDG-----------HWARDCKAGDWKNKCYRCGER-GHIE 489
Query: 189 RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRS 222
++ SP + SR + RS SRSP SRS R RS
Sbjct: 490 KNCKNSPKKLSR--HPRSDSRSPVRSRSPRRGRS 585
>AV773237
Length = 488
Score = 70.5 bits (171), Expect = 3e-13
Identities = 32/43 (74%), Positives = 37/43 (85%)
Frame = +3
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPR 43
MS R+SRT+YVGNL GDIR REVED+FYK+G I IDLK+PPR
Sbjct: 78 MSRRTSRTVYVGNLAGDIREREVEDLFYKYGNITHIDLKVPPR 206
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 68.2 bits (165), Expect = 1e-12
Identities = 44/111 (39%), Positives = 56/111 (49%)
Frame = +1
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + R++ED F FG I + + RPPGYAF+ F+D RDA+DAI DG
Sbjct: 94 VYVGNLDSRVSERDLEDEFRVFGVIRSV--WVARRPPGYAFIDFDDRRDAQDAIRELDGK 267
Query: 69 DFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLP 119
+ RVEL+H RG GG S G SD + G P
Sbjct: 268 N----GWRVELSHNSRGGGGG---GGGGRGGGRSGGGGGGSDMKCYECGEP 399
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 63.5 bits (153), Expect = 3e-11
Identities = 36/85 (42%), Positives = 51/85 (59%), Gaps = 1/85 (1%)
Frame = +2
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVG+L R R++E F K+G + +D+K +AFV+F D RDA+DA Y DG
Sbjct: 107 LYVGHLSSRTRERDLERAFSKYGRVRGVDMK-----HNFAFVEFSDPRDADDARYNLDGR 271
Query: 69 DFDGFRLRVELAHGG-RGSSSSVDR 92
D +G R+ VE A GG RG+ + R
Sbjct: 272 DVEGSRIVVEFAKGGPRGNREYLGR 346
Score = 32.3 bits (72), Expect = 0.083
Identities = 21/41 (51%), Positives = 21/41 (51%)
Frame = +3
Query: 189 RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
R YSRSP R RS RS RS SRSRS GR S
Sbjct: 516 RSYSRSPVRSRSPRRDRSRDRSYSRDRSYSRSRSPIGREKS 638
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +3
Query: 176 AFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSP 232
++SR+ +R R RD SR S RSYSR SRSP + R +S R S + SP
Sbjct: 519 SYSRSPVRSRSPRRDRSRDRSYSRDRSYSR--SRSP-IGREKSPLRDGSLSPRNRSP 680
>AV420911
Length = 418
Score = 61.2 bits (147), Expect = 2e-10
Identities = 37/96 (38%), Positives = 52/96 (53%)
Frame = +2
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + R++ED F +G + + + RPPGYAF++F+D RDA DAI+ DG
Sbjct: 110 VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 283
Query: 69 DFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRG 104
+ RVEL+H +G GG RG
Sbjct: 284 N----GWRVELSHNSKGGGGG-------RGGGRGRG 358
>TC18938 similar to UP|AAS00039 (AAS00039) Splicing factor-like protein,
partial (18%)
Length = 473
Score = 52.4 bits (124), Expect = 8e-08
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +3
Query: 4 RSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIY 63
R R+I+ GN D R E E +F ++G + +D+K G+AF+ ED RDA+ AI
Sbjct: 210 RKMRSIFCGNFEYDARQSESERLFRRYGKVDRVDMK-----SGFAFIYMEDERDADAAIR 374
Query: 64 YRDGYDF--DGFRLRVELAHGGRG 85
D +F G RLRVE RG
Sbjct: 375 ALDRAEFGRKGRRLRVEWTKHERG 446
>BP047377
Length = 564
Score = 52.4 bits (124), Expect = 8e-08
Identities = 28/88 (31%), Positives = 46/88 (51%), Gaps = 3/88 (3%)
Frame = +3
Query: 2 SSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPP---RPPGYAFVQFEDARDA 58
S R ++VGN+P D ++ +I + GP+V L I +P GY F +++D A
Sbjct: 114 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 293
Query: 59 EDAIYYRDGYDFDGFRLRVELAHGGRGS 86
A GY+ +G +LRV+ A +G+
Sbjct: 294 LSARRNLQGYEINGRQLRVDFAENDKGN 377
>TC14147 similar to UP|ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A,
chloroplast precursor (CP29A), partial (63%)
Length = 1602
Score = 50.4 bits (119), Expect = 3e-07
Identities = 63/239 (26%), Positives = 103/239 (42%), Gaps = 31/239 (12%)
Frame = +3
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDARDAEDAIYYR 65
++VGNLP + ++ ++F G + +++ K+ G+AFV A +AE A
Sbjct: 351 VFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTMSSAAEAEAAAQQF 530
Query: 66 DGYDFDGFRLRVE-----------LAHGGRGSSSSVDR--YSSYSGGSS----------- 101
+ Y+ +G LRV R ++S +R SY GGS
Sbjct: 531 NNYELEGRALRVNSGPPPKNENRGFNENPRFRNNSFNRGGSDSYRGGSDGYRGGGSDGYR 710
Query: 102 SRGASRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRER-GGMT---GIVDYTN 157
G+S S+ RV V L L+ R+ G V ++V +R G + G V +++
Sbjct: 711 GGGSSSYSENRVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSS 890
Query: 158 YDDMKYALRKLDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRS 216
D++ A+R LD ++ RA I+V + D P R+ Y SI PY R+
Sbjct: 891 PDEVNSAIRSLDGADLN---GRA-IKVSQAD----SKPKREF*GFYLSSI---PYQQRT 1034
Score = 39.3 bits (90), Expect = 7e-04
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 2 SSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDARDA 58
SS S ++VGNL + +E +F + G +VD + + R G+ FV F +
Sbjct: 723 SSYSENRVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDEV 902
Query: 59 EDAIYYRDGYDFDGFRLRVELA 80
AI DG D +G ++V A
Sbjct: 903 NSAIRSLDGADLNGRAIKVSQA 968
>AV775543
Length = 355
Score = 49.3 bits (116), Expect = 7e-07
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +1
Query: 19 RLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDG--YDFDGFRLR 76
R E+E +F K+G I +D+K G+AFV FED RD E+AI D + +D RL
Sbjct: 1 RQSELERLFSKYGRIERLDMK-----SGFAFVYFEDERDGEEAIRALDNIPFGYDKRRLS 165
Query: 77 VELAHGGRG 85
VE A G RG
Sbjct: 166VEWAMGERG 192
>TC8015 similar to UP|ROC4_NICSY (P19683) 31 kDa ribonucleoprotein,
chloroplast precursor, partial (28%)
Length = 717
Score = 49.3 bits (116), Expect = 7e-07
Identities = 30/91 (32%), Positives = 43/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 2 SSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDARDA 58
S S ++YVGNLP + +E+IF + G + + + + R G+ FV D
Sbjct: 63 SRDSGLSVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADI 242
Query: 59 EDAIYYRDGYDFDGFRLRVELAHGGRGSSSS 89
AI DG DG +RV +A G G SS
Sbjct: 243 NGAIAALDGQSLDGRTIRVSVAEGRSGGRSS 335
>TC11685 homologue to UP|PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like
protein, complete
Length = 558
Score = 46.6 bits (109), Expect = 4e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +1
Query: 6 SRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYR 65
+R +YV NLP +I E+ DIF K+G I I + G AFV +ED DA+ A+ +
Sbjct: 94 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 273
Query: 66 DGYD 69
G++
Sbjct: 274 SGFN 285
>BE122637
Length = 332
Score = 46.6 bits (109), Expect = 4e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +2
Query: 8 TIYVGNLPGDIRLREVEDIFYKFGPIVDIDLK---IPPRPPGYAFVQFEDARDAEDAIYY 64
++ V N+P D R E+ F +FGP+ D+ + P G+AFVQF D DA +A Y+
Sbjct: 26 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 205
Query: 65 RDGYDFDGFRLRVELA 80
+ F G + V +A
Sbjct: 206 MNRQIFAGREITVVVA 253
>AV413552
Length = 285
Score = 44.3 bits (103), Expect = 2e-05
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 7 RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDL--KIPPRPPGYAFVQFEDARDAEDAIYY 64
+ +YV NLP + +++D+F + G + D+++ R GYAFV +A+ A+
Sbjct: 19 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 198
Query: 65 RDGYDFDGFRLRVELA 80
D + G LRVELA
Sbjct: 199FDTLELSGRILRVELA 246
>TC14420 similar to UP|ROC3_NICSY (P19682) 28 kDa ribonucleoprotein,
chloroplast precursor (28RNP), partial (34%)
Length = 637
Score = 44.3 bits (103), Expect = 2e-05
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +1
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDARDAEDAIYYR 65
+YVGNLP D ++E +F + G +V + + R G+ FV D + DAI
Sbjct: 46 VYVGNLPWDFDNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAAL 225
Query: 66 DGYDFDGFRLRVELA 80
DG G +RV +A
Sbjct: 226 DGQSLGGRTIRVNVA 270
>TC18242 weakly similar to UP|O70495 (O70495) Plenty-of-prolines-101,
partial (5%)
Length = 490
Score = 43.5 bits (101), Expect = 4e-05
Identities = 29/55 (52%), Positives = 33/55 (59%)
Frame = +3
Query: 185 REYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRR 239
R Y R S S SR SRR YS S S SP SR+ SRSRS RS S SP ++ R+
Sbjct: 48 RRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRS---RSRSRSPYSRSPRK 203
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/45 (51%), Positives = 25/45 (55%)
Frame = +3
Query: 178 SRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRS 222
SR+ R R S SPSR RS SRS SRSPY R R+RS
Sbjct: 81 SRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRS 215
>TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;}, partial (55%)
Length = 1276
Score = 43.5 bits (101), Expect = 4e-05
Identities = 66/215 (30%), Positives = 91/215 (41%), Gaps = 14/215 (6%)
Frame = +2
Query: 26 IFYKFGPIVDIDLKIPPRPP---GYAFVQFEDARDAEDAIYYRDGYDFDGFRLRVELAHG 82
+F K+G +VDI + R G+AFV+++ A +A A+ DG DG + V+ A
Sbjct: 188 LFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKY 367
Query: 83 GRGSSSS-----VDRYSSYSGGSSSRGASRR--SDYRVLVTGLPPSASWQDLKDHMRKAG 135
G + ++ GS SR RR D+R S +D +D+ R++
Sbjct: 368 GPNAERIHKGRIIESEERAKQGSRSRSPRRRHRDDHR----------SSRD-RDYRRRSR 514
Query: 136 DVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRVREYDRDYSRSP 195
+ + ERG D D Y R S + R R YD + SRS
Sbjct: 515 SRSYDKY--ERG------DRHRGRDRDYRRRSRSRSASLDYKGRGRGR---YDDEPSRSR 661
Query: 196 SR--DSRRSYSRSIS--RSPYLSRSRSRSRSYSGR 226
SR DSR RS S RSP RS S RS S R
Sbjct: 662 SRSVDSRSPARRSPSPRRSPSPKRSVSPKRSTSPR 766
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/67 (35%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 166 RKLDDSEFRNAFSRAYIRVREYDRDYSRSPSRD-SRRSYSRSISRSPYLSRSRSRSRSYS 224
R ++ E SR+ R + D+ S RD RRS SRS + R R R R Y
Sbjct: 398 RIIESEERAKQGSRSRSPRRRHRDDHRSSRDRDYRRRSRSRSYDKYERGDRHRGRDRDYR 577
Query: 225 GRSISLS 231
RS S S
Sbjct: 578 RRSRSRS 598
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,071,061
Number of Sequences: 28460
Number of extensions: 53506
Number of successful extensions: 650
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of query: 259
length of database: 4,897,600
effective HSP length: 88
effective length of query: 171
effective length of database: 2,393,120
effective search space: 409223520
effective search space used: 409223520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0299.13