TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0296b.2
         (1291 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               155  3e-38
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...   105  6e-23
TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1  ...    37  0.020
BP041113                                                               35  0.099
TC13572                                                                33  0.38
BP065875                                                               30  3.2
AV408145                                                               30  3.2
AV768875                                                               28  9.3
TC18223                                                                28  9.3
CB829198                                                               28  9.3

>TC18710 
          Length = 843

 Score =  155 bits (393), Expect = 3e-38
 Identities = 85/233 (36%), Positives = 127/233 (54%), Gaps = 1/233 (0%)
 Frame = +2

Query: 394 KEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGKVDERLLEILV 453
           ++++R     +++    G DG    F+++  + V D+V   +    E  ++   + E LV
Sbjct: 137 QKKLRLLFFLLETSQPRGMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLV 316

Query: 454 VLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPMQNSFLPGRGTMDN 513
            LIPKV HP SI +FRPIS C   YK+I+K+ V R++  + D++ PMQ+ F+ GR   DN
Sbjct: 317 TLIPKVPHPESINQFRPISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDN 496

Query: 514 AFLA*EIIHQMHRSMA-RKGNLAFKIDLEKAYDSISWSFLRETLELYEFPLVIIDLIMCY 572
             +  E  H ++R  A  + +   K+D+ KAYD + W FL  +L  + F    + +IM  
Sbjct: 497 LLIVQEAFHAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMIL 676

Query: 573 VSSSQISLLWNGAPLPSFKPGRGLRQGDPKSPYFFVLCMERLSIHIQNLVEPG 625
           VS    +   NG   P   P RGLRQGDP SPY F+  ME LS+ IQN    G
Sbjct: 677 VSGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMG 835


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score =  105 bits (261), Expect = 6e-23
 Identities = 59/177 (33%), Positives = 101/177 (56%), Gaps = 3/177 (1%)
 Frame = -3

Query: 327 RKRNSVHRLKLSDGSWCSDTSKLQEEALGYFQALFAGN--QEASQTPFPGDNVPKL-KEV 383
           R  N + ++K + G W     K+ E A+ YF  +++ +  Q   +   P   +PKL  + 
Sbjct: 524 RDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRECLAP---IPKLVTDR 354

Query: 384 VRFLLVQPVSKEEVRQALMSMKSFTAPGPDGFQPFFFKQYWEQVGDTVWKVVSEAFESGK 443
           +   L   VS +E+++A+ SM    APG DG    F++Q  E V + V   + + F+ G+
Sbjct: 353 LNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNAILDFFDHGE 174

Query: 444 VDERLLEILVVLIPKVNHPTSIKEFRPISLCNVTYKLITKLLVNRIRPFLNDIVGPM 500
           +   L E LV LIPK+ H  +I++FRPIS C+  YK+I+K++V R++P + +++ PM
Sbjct: 173 LPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKPDMVNLISPM 3


>TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1  , partial
           (27%)
          Length = 1135

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 17/57 (29%), Positives = 32/57 (55%)
 Frame = -3

Query: 816 WSLNGLYTVCDFDIASRLNRVTPTLSTAQEDQWIWGPGSRGTYLVKEAYSWLHERNR 872
           WSL+ L+T+   ++ +  + +   + T  +D W     S+G Y+V+E YSW +  +R
Sbjct: 281 WSLDWLWTMMP*NMLNLFSHLYLRVVTKLKDLWA*DSRSKGCYMVREFYSWFNSLDR 111


>BP041113 
          Length = 503

 Score = 34.7 bits (78), Expect = 0.099
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 840 LSTAQEDQWIWGPGSRGTYLVKEAYSWL 867
           LS   ED+W+W PG  GTY V  AYS+L
Sbjct: 211 LSEGVEDKWLWLPG--GTYTVNSAYSFL 288


>TC13572 
          Length = 534

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
 Frame = -3

Query: 804 RLEWSDILQHGAWSLNGLYT------------VCDFDIASRLNRVTPTLSTAQEDQWIWG 851
           +L+W+ I + G WS  G++               D+  A  L+ V   L     D+W+W 
Sbjct: 259 KLKWASIDECGGWS-QGVWNWDFRWRRPLAGRELDWLQALSLDIVRVPLLAGVPDKWVWK 83

Query: 852 PGSRGTYLVKEAYSWL 867
           P   G+Y V  A+ +L
Sbjct: 82  PSEDGSYSVNSAFIFL 35


>BP065875 
          Length = 495

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 21  LGFSFAFVMEAVGFSGGIWV 40
           +GF  + V+EA GF GGIW+
Sbjct: 263 IGFDHSVVVEAEGFVGGIWI 204


>AV408145 
          Length = 422

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 2/43 (4%)
 Frame = -2

Query: 845 EDQWIWGPGSRGT--YLVKEAYSWLHERNRVSAGAGNWRWLWR 885
           ED  ++G    G   + V  A +W+   + V  G G WRW WR
Sbjct: 175 EDVGVFGDEELGEVHHGVHVAAAWVWYGHHVGGGGGWWRWEWR 47


>AV768875 
          Length = 232

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 23/58 (39%), Positives = 26/58 (44%)
 Frame = +2

Query: 102 LGSCWGTLTKSYNLMRSEEELSYQAEQQNLQRFLMLVA*WILEWWIAGLLGKGK*TIG 159
           LG   GT  K   L +  E  S   E   LQ   M+V *  L W +A LLG  K T G
Sbjct: 56  LGF*LGT*MKFCFLHKLGEVSSTLIEPNALQLSWMIVI*LTLAW*VASLLGSAKETTG 229


>TC18223 
          Length = 601

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 534 LAFKIDLEKAYDSISWSFLR 553
           L+  +DL+ +YD ISW FLR
Sbjct: 308 LSHGVDLQGSYDKISWIFLR 367


>CB829198 
          Length = 562

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 870 RNRVSAGAGNWRWLW 884
           RNR   G G WRW W
Sbjct: 153 RNRTLIGGGRWRWWW 109


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.340    0.149    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,414,896
Number of Sequences: 28460
Number of extensions: 346123
Number of successful extensions: 2582
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2571
length of query: 1291
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1190
effective length of database: 2,023,140
effective search space: 2407536600
effective search space used: 2407536600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 61 (28.1 bits)