TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0290.7
         (47 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW719995                                                               27  0.87
TC13566 weakly similar to UP|Q86RM4 (Q86RM4) Merozoite surface p...    26  1.5

>AW719995 
          Length = 364

 Score = 26.9 bits (58), Expect = 0.87
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 11 NPTGWEVQELGFKSKPNVWAYFSVKS 36
          N T W +Q L +  +PNVW + S  S
Sbjct: 16 NMTRWLIQILSWLMQPNVWRFVSFAS 93


>TC13566 weakly similar to UP|Q86RM4 (Q86RM4) Merozoite surface protein 3
           alpha (Fragment), partial (3%)
          Length = 509

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 8/23 (34%), Positives = 15/23 (64%)
 Frame = -3

Query: 7   DYGFNPTGWEVQELGFKSKPNVW 29
           D+   P+GW++Q  G + +P+ W
Sbjct: 162 DWQLQPSGWQLQPSGGQHQPSRW 94


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 991,429
Number of Sequences: 28460
Number of extensions: 9559
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of query: 47
length of database: 4,897,600
effective HSP length: 23
effective length of query: 24
effective length of database: 4,243,020
effective search space: 101832480
effective search space used: 101832480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)