BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0290.16
(172 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP056651 50 3e-07
CN825682 33 0.026
AV409241 27 2.5
TC8323 weakly similar to UP|Q8R419 (Q8R419) Endoribonuclease Dic... 26 3.2
TC20011 similar to GB|CAA40073.1|1345573|PVEPC1 endopeptidase (E... 26 4.2
TC8388 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferase ... 26 4.2
BP082092 26 4.2
TC15577 26 4.2
BP051955 25 5.5
BP056337 25 5.5
TC15142 similar to UP|Q945R8 (Q945R8) Cysteine proteinase (Fragm... 25 5.5
TC14781 homologue to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional... 25 9.4
>BP056651
Length = 564
Score = 49.7 bits (117), Expect = 3e-07
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 1 KFTWHRPNNQAQSRLDRVLVSNEWGTFWPNCSQLV 35
K+TW R N +A+SRLDR LVS++W T W +C+Q V
Sbjct: 459 KYTWVRSNGKARSRLDRFLVSHQWNTSWXDCAQYV 563
>CN825682
Length = 626
Score = 33.1 bits (74), Expect = 0.026
Identities = 19/48 (39%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = -3
Query: 1 KFTWH---RPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCP 45
+FTW R + RLDRVLV+ W +PN + + L SDH P
Sbjct: 159 RFTWLSNLRNGLVTKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16
>AV409241
Length = 282
Score = 26.6 bits (57), Expect = 2.5
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +3
Query: 35 VLNRDVSDHCPVLLRQTFQDWGPKPFRVLNCWLGDHRLPALV 76
++NR + P +LR PKP +L L HRLP+L+
Sbjct: 51 IINRTCKCNLPHILR-------PKPLHLLRLHLRLHRLPSLL 155
>TC8323 weakly similar to UP|Q8R419 (Q8R419) Endoribonuclease Dicer
(Fragment), partial (8%)
Length = 639
Score = 26.2 bits (56), Expect = 3.2
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +2
Query: 56 GPKPFR----VLNCWLGDHRLPALVENSWKDMKVKGW 88
GP+ F ++N W+G + +W+ +V GW
Sbjct: 20 GPREFLQVVVIINFWMGHRHGDTIP*GTWRHYRVSGW 130
>TC20011 similar to GB|CAA40073.1|1345573|PVEPC1 endopeptidase (EP-C1)
{Phaseolus vulgaris;} , partial (29%)
Length = 472
Score = 25.8 bits (55), Expect = 4.2
Identities = 9/24 (37%), Positives = 13/24 (53%)
Frame = +1
Query: 19 LVSNEWGTFWPNCSQLVLNRDVSD 42
+V N WG W + + RD+SD
Sbjct: 196 IVKNSWGAKWGEEGYIRMKRDISD 267
>TC8388 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferase , partial
(30%)
Length = 675
Score = 25.8 bits (55), Expect = 4.2
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = -3
Query: 51 TFQDWGPKPFRVLNCWLG 68
T+ +WG K + CWLG
Sbjct: 277 TYAEWGSKADNCIMCWLG 224
>BP082092
Length = 388
Score = 25.8 bits (55), Expect = 4.2
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -1
Query: 19 LVSNEWGTFWPNCSQLVLN 37
L N W +FW NCS++ LN
Sbjct: 232 LEMNFW*SFWYNCSRVQLN 176
>TC15577
Length = 696
Score = 25.8 bits (55), Expect = 4.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 45 PVLLRQTFQDWGPKPFRVLNCWLGDHRLPALVENS 79
P Q + G P V +C L +LP LVEN+
Sbjct: 50 PTQQEQVLLELGNDPKLVYHCGLTPRKLPELVENN 154
>BP051955
Length = 590
Score = 25.4 bits (54), Expect = 5.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 3 TWHRPNNQAQSRLDRVLVSNEWGTFWPNCSQLVLNRDVSDHCPVL 47
TW+ + ++ + + N FW NC Q VL R+ S VL
Sbjct: 178 TWYTSKQEIPTQQKPLKLRNP--RFWKNCFQSVLGRNHSTESVVL 306
>BP056337
Length = 550
Score = 25.4 bits (54), Expect = 5.5
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = -2
Query: 91 FMVKEKLKGLRSVLKEWNREVFG 113
++VKE L+G R + WN+E G
Sbjct: 168 YIVKENLRGRRKGRENWNKENCG 100
>TC15142 similar to UP|Q945R8 (Q945R8) Cysteine proteinase (Fragment),
partial (36%)
Length = 646
Score = 25.4 bits (54), Expect = 5.5
Identities = 16/46 (34%), Positives = 20/46 (42%), Gaps = 4/46 (8%)
Frame = +3
Query: 25 GTFWPNCS--QLVLNRDVS--DHCPVLLRQTFQDWGPKPFRVLNCW 66
G WP+C+ Q D+ P+ LRQ F WG L CW
Sbjct: 93 GEAWPSCNWYQCSFYADIHRWSFMPIHLRQAFGSWGSS--GGLWCW 224
>TC14781 homologue to UP|Q9XHC5 (Q9XHC5) Precursor monofunctional
aspartokinase (Aspartate kinase) , partial (40%)
Length = 1084
Score = 24.6 bits (52), Expect = 9.4
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = -3
Query: 17 RVLVSNEWGTFWPNCSQLV 35
R+L+ N W NCS+LV
Sbjct: 839 RILLQNNWALLHLNCSRLV 783
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.138 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,684,816
Number of Sequences: 28460
Number of extensions: 51670
Number of successful extensions: 240
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of query: 172
length of database: 4,897,600
effective HSP length: 84
effective length of query: 88
effective length of database: 2,506,960
effective search space: 220612480
effective search space used: 220612480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0290.16