BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0290.12
(143 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV407558 201 4e-53
TC14170 similar to UP|PSBS_LYCES (P54773) Photosystem II 22 kDa ... 39 3e-04
TC9316 similar to UP|Q94F86 (Q94F86) Early light inducible prote... 36 0.002
TC16755 similar to GB|AAL25838.1|23379334|AY057393 one-helix pro... 32 0.042
TC16889 weakly similar to UP|PSBS_ARATH (Q9XF91) Photosystem II ... 28 0.60
BP043317 28 0.79
TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding pro... 27 1.0
TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transpor... 27 1.3
CB828120 26 2.3
TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding ... 26 3.0
TC8722 similar to UP|Q9LU67 (Q9LU67) Phosphatidylserine decarbox... 25 3.9
BU494209 25 3.9
TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b bindi... 25 3.9
TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b bind... 25 5.1
TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyl... 25 5.1
TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding p... 25 5.1
TC8139 25 5.1
AW163948 25 5.1
TC8638 25 6.7
TC7967 UP|ATPB_LOTJA (Q9BBU0) ATP synthase beta chain , complete 25 6.7
>AV407558
Length = 310
Score = 201 bits (511), Expect = 4e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = +3
Query: 23 AAKYSATARFPLPNLVPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQSTKDGNGLD 82
AAKYSATARFPLPNLVPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQSTKDGNGLD
Sbjct: 3 AAKYSATARFPLPNLVPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQSTKDGNGLD 182
Query: 83 VWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAV 124
VWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAV
Sbjct: 183 VWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAV 308
>TC14170 similar to UP|PSBS_LYCES (P54773) Photosystem II 22 kDa protein,
chloroplast precursor (CP22), partial (81%)
Length = 1201
Score = 38.9 bits (89), Expect = 3e-04
Identities = 31/101 (30%), Positives = 50/101 (48%), Gaps = 7/101 (6%)
Frame = +3
Query: 25 KYSATARFPLPNLVPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQS---TKDGNGL 81
K+S + PLP+ S S T T L + +S + + + + E T G G
Sbjct: 237 KFSQLSFNPLPSN-SSLFSSRTFTTLALFKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGF 413
Query: 82 ----DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 414 TKQNELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIP 536
Score = 35.0 bits (79), Expect = 0.005
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GRLA +GFA + E+ TGKG L + + +P
Sbjct: 741 ELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGIP 851
>TC9316 similar to UP|Q94F86 (Q94F86) Early light inducible protein,
partial (84%)
Length = 831
Score = 36.2 bits (82), Expect = 0.002
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +1
Query: 86 GRLAMIGFAAGITVEVATGKGLLENF---GVASPLPT-VALAVTALVGVLTAVFIFQSAS 141
GRLAMIGF A + VEVA G+G+ E GV L T V + +LV + V + +S S
Sbjct: 409 GRLAMIGFVAAMAVEVARGQGVFEQISDGGVPWFLGTSVVFTLASLVPLFQGVSV-ESKS 585
Query: 142 K 142
K
Sbjct: 586 K 588
Score = 26.6 bits (57), Expect = 1.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 67 VSIRSEQSTKDGNGLDVWLGRLAMIGFAAGITVEVATGKGLLENF 111
VS+ S+ + ++W GRLAM+G A E G L+ F
Sbjct: 565 VSVESKSKGLMTSDAELWNGRLAMLGLIALAFTEYVKGGTLV*EF 699
>TC16755 similar to GB|AAL25838.1|23379334|AY057393 one-helix protein
{Arabidopsis thaliana;}, partial (59%)
Length = 856
Score = 32.0 bits (71), Expect = 0.042
Identities = 18/35 (51%), Positives = 20/35 (56%), Gaps = 7/35 (20%)
Frame = +2
Query: 86 GRLAMIGFAAGITVEVATG-------KGLLENFGV 113
GR AM GFA G+ E ATG K LL NFG+
Sbjct: 566 GRWAMFGFAVGMLTEYATGSDFVDQVKILLSNFGI 670
>TC16889 weakly similar to UP|PSBS_ARATH (Q9XF91) Photosystem II 22 kDa
protein, chloroplast precursor (CP22), partial (14%)
Length = 415
Score = 28.1 bits (61), Expect = 0.60
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAV 124
G+ A IGF + E+ TGKGLL+ G + +V+ A+
Sbjct: 89 GKAAAIGFLLLLDFELLTGKGLLKGTGFLDFIYSVSNAL 205
>BP043317
Length = 448
Score = 27.7 bits (60), Expect = 0.79
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = +1
Query: 3 LATQTSASLSISFRDACVFPAAKYSATARFPLPNLVPSRASFATGTPLL 51
L T + S SFR + P ++A+ RFPLPN+ + F + PLL
Sbjct: 184 LKKSTVLTASHSFRSS---PGGSFTASLRFPLPNV--ASICFLS*APLL 315
>TC8005 similar to UP|Q9XQB2 (Q9XQB2) Chlorophyll a/b binding protein CP29,
complete
Length = 1116
Score = 27.3 bits (59), Expect = 1.0
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Frame = +1
Query: 87 RLAMIGFAAGITVEVATGKGLLENFG--VASPLPTVAL 122
RLAM+ F ATGKG L+N+ ++ PL T +
Sbjct: 793 RLAMVAFLGFAVQAAATGKGPLDNWATHLSDPLHTTII 906
>TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transporter,
partial (37%)
Length = 624
Score = 26.9 bits (58), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 57 GRKLACRAMPVSIRSEQSTKDGNGLDVWL 85
GR + R P+SI ++ST+ N L WL
Sbjct: 319 GRNSSLRLPPISILHDRSTRLANSLKSWL 233
>CB828120
Length = 426
Score = 26.2 bits (56), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = -2
Query: 10 SLSISFRDACVFPAAKYSATARFPLPNLVPS 40
S+SISFR++ +FP + A R+ P P+
Sbjct: 344 SISISFRNSTIFPNSFLLAAIRYINPQPTPT 252
>TC14513 homologue to UP|Q7M1K9 (Q7M1K9) Chlorophyll a/b-binding protein
(cab-11), complete
Length = 1025
Score = 25.8 bits (55), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 75 TKDGNGLDVWLGRLAMIGFAAGITVEVATGKGLLEN 110
T++ ++ GRLAM+ F I TGKG +N
Sbjct: 638 TEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDN 745
>TC8722 similar to UP|Q9LU67 (Q9LU67) Phosphatidylserine decarboxylase,
partial (14%)
Length = 609
Score = 25.4 bits (54), Expect = 3.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 35 PNLVPSRASFATGTPLLIRRS 55
PNL+P+ ++G L IRRS
Sbjct: 259 PNLIPTETKVSSGLVLFIRRS 197
>BU494209
Length = 453
Score = 25.4 bits (54), Expect = 3.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -2
Query: 110 NFGVASPLPTVALAVTALVGVLTAVFIFQSAS 141
+FG ++P P++ + +T + +T+V +FQ +
Sbjct: 377 SFGRSNPSPSLRIFLTTFLSSVTSVTVFQETN 282
>TC7795 homologue to UP|CB2G_LYCES (P07369) Chlorophyll a-b binding protein
3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP),
partial (97%)
Length = 1058
Score = 25.4 bits (54), Expect = 3.9
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFG--VASPLPTVALA 123
GRLAM + TGKG LEN +A P+ A A
Sbjct: 704 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 823
>TC12237 homologue to UP|CB23_LYCES (P27489) Chlorophyll a-b binding protein
13, chloroplast precursor (LHCII type III CAB-13),
partial (43%)
Length = 615
Score = 25.0 bits (53), Expect = 5.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 86 GRLAMIGFAAGITVEVATGKGLLEN 110
GRLAM + TGKG LEN
Sbjct: 198 GRLAMFSMFGFFVQAIVTGKGPLEN 272
>TC7803 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, complete
Length = 1178
Score = 25.0 bits (53), Expect = 5.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 86 GRLAMIGFAAGITVEVATGKGLLEN 110
GRLAM + TGKG LEN
Sbjct: 829 GRLAMFSMFGFFVQAIVTGKGPLEN 903
>TC7794 homologue to UP|Q9M600 (Q9M600) Chlorophyll a/b binding protein
precursor, partial (97%)
Length = 2581
Score = 25.0 bits (53), Expect = 5.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 86 GRLAMIGFAAGITVEVATGKGLLEN 110
GRLAM + TGKG LEN
Sbjct: 1045 GRLAMFSMFGFFVQAIVTGKGPLEN 1119
>TC8139
Length = 619
Score = 25.0 bits (53), Expect = 5.1
Identities = 16/45 (35%), Positives = 20/45 (43%)
Frame = -1
Query: 63 RAMPVSIRSEQSTKDGNGLDVWLGRLAMIGFAAGITVEVATGKGL 107
R + + SEQ G GL +G IGF G + GKGL
Sbjct: 379 RXLNGELVSEQELPFGTGL*KGIGXFTKIGFGIGF---LTNGKGL 254
>AW163948
Length = 352
Score = 25.0 bits (53), Expect = 5.1
Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 6/37 (16%)
Frame = +2
Query: 25 KYSATARFPLPNLVPSRASFATG------TPLLIRRS 55
++ + +FP P LV RA+ ATG +PL +RR+
Sbjct: 200 RFRKSRQFPRPRLVRRRAT*ATGSRKLQSSPLPLRRA 310
>TC8638
Length = 700
Score = 24.6 bits (52), Expect = 6.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -3
Query: 3 LATQTSASLSISFR----DACVFPAAKYSATARF 32
LA + + SL SF +C FP+AK SAT R+
Sbjct: 185 LAIRDTVSL*PSFNLLASKSCRFPSAKESATGRY 84
>TC7967 UP|ATPB_LOTJA (Q9BBU0) ATP synthase beta chain , complete
Length = 2457
Score = 24.6 bits (52), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -3
Query: 11 LSISFRDACVFPAAKYSATARFPLPNLV 38
LSI+ +C F + KYSA R P L+
Sbjct: 1360 LSINRSTSCSFTSRKYSAIVRAVNPTLI 1277
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,012,304
Number of Sequences: 28460
Number of extensions: 23257
Number of successful extensions: 139
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of query: 143
length of database: 4,897,600
effective HSP length: 82
effective length of query: 61
effective length of database: 2,563,880
effective search space: 156396680
effective search space used: 156396680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0290.12