BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0288.8
(846 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB827949 346 1e-95
TC10258 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Ar... 82 1e-26
TC16173 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Ar... 79 4e-15
AV409959 72 3e-13
AV411780 70 1e-12
TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 64 8e-11
CN824966 64 8e-11
AU089356 62 3e-10
TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 62 3e-10
TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal prote... 62 4e-10
TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 62 4e-10
TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (... 62 4e-10
TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%) 62 4e-10
AV428412 62 4e-10
TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 62 4e-10
TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 62 4e-10
TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension ... 62 4e-10
TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 62 4e-10
AV410621 62 4e-10
TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 59 3e-09
>CB827949
Length = 508
Score = 346 bits (887), Expect = 1e-95
Identities = 169/169 (100%), Positives = 169/169 (100%)
Frame = +1
Query: 609 TLEDVKDADPFLYSSCKQILEMDSDFIDSDALGLTFVREVEELGDTKVVELCPGGKNLIV 668
TLEDVKDADPFLYSSCKQILEMDSDFIDSDALGLTFVREVEELGDTKVVELCPGGKNLIV
Sbjct: 1 TLEDVKDADPFLYSSCKQILEMDSDFIDSDALGLTFVREVEELGDTKVVELCPGGKNLIV 180
Query: 669 NSKNREKYIDLLIKDRFVTSISEQVSHFSKGFTDILSSSKFQQFFFQSLELEDLDWMLHG 728
NSKNREKYIDLLIKDRFVTSISEQVSHFSKGFTDILSSSKFQQFFFQSLELEDLDWMLHG
Sbjct: 181 NSKNREKYIDLLIKDRFVTSISEQVSHFSKGFTDILSSSKFQQFFFQSLELEDLDWMLHG 360
Query: 729 SEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWT 777
SEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWT
Sbjct: 361 SEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWT 507
>TC10258 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;}, partial (68%)
Length = 907
Score = 81.6 bits (200), Expect(2) = 1e-26
Identities = 45/131 (34%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Frame = +3
Query: 720 EDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWTSV 779
++L+ ++ G D I ++D +A+T+Y+GY I WFWE++ + E + LL F T
Sbjct: 351 QELELLISGLPD-IDLDDLRANTDYSGYSAASPVIPWFWEVIQGFSQEDKARLLQFVTGT 527
Query: 780 KYLPVEGFCGL-----ASRLYIYKSPEPEDRLPSSHTCFYRMCFPAYSSMTVMQERLEV- 833
+P+EGF L + + I+K+ D LPS+HTCF ++ P Y S ++ERL +
Sbjct: 528 SKVPLEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLEERLLLA 707
Query: 834 ITQEHIGCSFG 844
I + + G FG
Sbjct: 708 IHEANEGFGFG 740
Score = 56.2 bits (134), Expect(2) = 1e-26
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Frame = +2
Query: 613 VKDADPFLYSSCKQILEMDSDFIDSDALGLTFVREVEE-----LGDTKVV--ELCPGGKN 665
++ DP + + K +LE D SD L LTF + +E T+V EL PGG+N
Sbjct: 35 IEAIDPDYFKNLKWMLENDI----SDVLDLTFSIDADEEKLILYERTEVTDYELIPGGRN 202
Query: 666 LIVNSKNREKYIDLLIKDRFVTSISEQVSHFSKGFTDILS 705
+ V +N+ +Y+DL+ + R T+I Q++ F +GF +++S
Sbjct: 203 IKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFGELIS 322
>TC16173 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;}, partial (37%)
Length = 601
Score = 78.6 bits (192), Expect = 4e-15
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = +3
Query: 733 ISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFCGL-- 790
I ++D +A+TEY+GY I WFWE+V + E + LL F T +P+EGF L
Sbjct: 30 IDLDDLRANTEYSGYSTGSPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQG 209
Query: 791 ---ASRLYIYKSPEPEDRLPSSHTCFYRMCFPAYSSMTVMQERLEV-ITQEHIGCSFG 844
+ + I+K+ D LPS+HTCF ++ P Y S ++ERL + I + + G FG
Sbjct: 210 ISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEANEGFGFG 383
>AV409959
Length = 424
Score = 72.4 bits (176), Expect = 3e-13
Identities = 44/138 (31%), Positives = 66/138 (46%), Gaps = 1/138 (0%)
Frame = +1
Query: 495 LSESFEYIARADTASLHAGLFMEFKNEEATGPGVL-REWFLLVCQALFNPQNALFVACPN 553
L +S+ + T L L ++F+ EE G L REW+ L+ + +F+ LF N
Sbjct: 1 LEDSYNQLRMRPTQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGN 180
Query: 554 DRRRFYPNHASKVHPLHLEYFGFSGRVIALALMHKVQVGIVLDRVFFLQLAGKHITLEDV 613
+ F PN S HL YF F GRV+ AL + + R F+ + G +T D+
Sbjct: 181 NAT-FQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVYFTRSFYKHILGVKVTYHDI 357
Query: 614 KDADPFLYSSCKQILEMD 631
+ DP Y + K +LE D
Sbjct: 358 EAVDPDYYKNLKWMLEND 411
>AV411780
Length = 353
Score = 70.5 bits (171), Expect = 1e-12
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Frame = +1
Query: 743 EYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFCGLAS-----RLYIY 797
+Y GY + WFWE+V E LL F T +P+EGF L R I+
Sbjct: 1 QYTGYTVASNVVQWFWEVVKTFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQRFQIH 180
Query: 798 KSPEPEDRLPSSHTCFYRMCFPAYSSMTVMQERLEVITQE 837
K+ DRLPS+HTCF ++ P Y+S +QERL + E
Sbjct: 181 KAYGAPDRLPSAHTCFNQLDLPEYTSKEQLQERLLLAIHE 300
>TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (67%)
Length = 842
Score = 64.3 bits (155), Expect = 8e-11
Identities = 35/95 (36%), Positives = 59/95 (61%)
Frame = +1
Query: 35 MKKDDAAKAVYSAVHHRSIMLQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVF 94
+++ K S + HR +Q FV+ + G TI ++ DT+ ++ +IQ +GIP
Sbjct: 22 LQRKKERKKEKSLISHR-FKMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPD 195
Query: 95 EQRLIYNGKQLQSEQTLAECSIGKDASLQLVGRMR 129
+QRLI+ GKQL+ +TLA+ +I K+++L LV R+R
Sbjct: 196 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 300
Score = 63.5 bits (153), Expect = 1e-10
Identities = 31/75 (41%), Positives = 52/75 (69%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ ++TLA+
Sbjct: 307 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADY 483
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 484 NIQKESTLHLVLRLR 528
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 535 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 711
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 712 NIQKESTLHLVLRLR 756
>CN824966
Length = 600
Score = 64.3 bits (155), Expect = 8e-11
Identities = 33/79 (41%), Positives = 53/79 (66%)
Frame = +1
Query: 51 RSIMLQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQT 110
RS +Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +T
Sbjct: 4 RSSKMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 180
Query: 111 LAECSIGKDASLQLVGRMR 129
LA+ +I K+++L LV R+R
Sbjct: 181 LADYNIQKESTLHLVLRLR 237
>AU089356
Length = 600
Score = 62.4 bits (150), Expect = 3e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 256 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 432
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 433 NIXKESTLHLVLRLR 477
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 28 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 204
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 205 NIQKESTLHLVLRLR 249
>TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (70%)
Length = 868
Score = 62.4 bits (150), Expect = 3e-10
Identities = 31/77 (40%), Positives = 52/77 (67%)
Frame = +3
Query: 53 IMLQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLA 112
+ +Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA
Sbjct: 72 LKMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 248
Query: 113 ECSIGKDASLQLVGRMR 129
+ +I K+++L LV R+R
Sbjct: 249 DYNIQKESTLHLVLRLR 299
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +3
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 306 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 482
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 483 NIQKESTLHLVLRLR 527
Score = 37.4 bits (85), Expect(2) = 5e-06
Identities = 18/34 (52%), Positives = 27/34 (78%)
Frame = +1
Query: 96 QRLIYNGKQLQSEQTLAECSIGKDASLQLVGRMR 129
QRLI+ GKQL+ +TLA+ +I K+++L LV R+R
Sbjct: 655 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 756
Score = 30.4 bits (67), Expect(2) = 5e-06
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIP 92
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP
Sbjct: 534 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIP 644
>TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal protein S27a
fusion protein - white lupine {Lupinus
albus;}, complete
Length = 729
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 82 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 258
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 259 NIQKESTLHLVLRLR 303
>TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 567
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 151 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 327
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 328 NIQKESTLHLVLRLR 372
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/59 (40%), Positives = 39/59 (65%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAE 113
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 379 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 552
Score = 45.8 bits (107), Expect = 3e-05
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +1
Query: 84 RIQALKGIPVFEQRLIYNGKQLQSEQTLAECSIGKDASLQLVGRMR 129
+IQ +GIP +QRLI+ GKQL+ +TLA+ +I K+++L LV R+R
Sbjct: 7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 144
>TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (fragment)
{Helianthus annuus;} , partial (93%)
Length = 1380
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 274 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 450
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 451 NIQKESTLHLVLRLR 495
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 46 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 222
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 223 NIQKESTLHLVLRLR 267
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 730 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 906
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 907 NIQKESTLHLVLRLR 951
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 958 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 1134
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 1135 NIQKESTLHLVLRLR 1179
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/75 (40%), Positives = 51/75 (68%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ ++LA+
Sbjct: 502 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRSLADY 678
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 679 NIQKESTLHLVLRLR 723
>TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)
Length = 527
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +3
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 150 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 326
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 327 NIQKESTLHLVLRLR 371
Score = 45.8 bits (107), Expect = 3e-05
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +3
Query: 84 RIQALKGIPVFEQRLIYNGKQLQSEQTLAECSIGKDASLQLVGRMR 129
+IQ +GIP +QRLI+ GKQL+ +TLA+ +I K+++L LV R+R
Sbjct: 6 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 143
>AV428412
Length = 426
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +2
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 98 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 274
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 275 NIQKESTLHLVLRLR 319
Score = 30.4 bits (67), Expect = 1.2
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +2
Query: 100 YNGKQLQSEQTLAECSIGKDASLQLVGRMR 129
+ GKQL+ +TLA+ +I K+++L LV R+R
Sbjct: 2 FAGKQLEDGRTLADYNIQKESTLHLVLRLR 91
>TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (43%)
Length = 563
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +3
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 303 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 479
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 480 NIQKESTLHLVLRLR 524
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +3
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 75 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 251
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 252 NIQKESTLHLVLRLR 296
>TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (37%)
Length = 574
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 184 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 360
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 361 NIQKESTLHLVLRLR 405
Score = 52.4 bits (124), Expect = 3e-07
Identities = 25/59 (42%), Positives = 41/59 (69%)
Frame = +1
Query: 71 QAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAECSIGKDASLQLVGRMR 129
+ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+ +I K+++L LV R+R
Sbjct: 1 EVESSDTIDNVKAKIQDQEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 177
>TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension protein,
partial (97%)
Length = 644
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +1
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 31 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 207
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 208 NIQKESTLHLVLRLR 252
>TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (23%)
Length = 502
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +2
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 35 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 212 NIQKESTLHLVLRLR 256
>AV410621
Length = 292
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/75 (41%), Positives = 51/75 (67%)
Frame = +3
Query: 55 LQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAEC 114
+Q FV+ + G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+
Sbjct: 45 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 221
Query: 115 SIGKDASLQLVGRMR 129
+I K+++L LV R+R
Sbjct: 222 NIQKESTLHLVLRLR 266
>TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (18%)
Length = 427
Score = 58.9 bits (141), Expect = 3e-09
Identities = 28/65 (43%), Positives = 45/65 (69%)
Frame = +2
Query: 65 GNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAECSIGKDASLQL 124
G TI ++ DT+ ++ +IQ +GIP +QRLI+ GKQL+ +TLA+ +I K+++L L
Sbjct: 2 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 181
Query: 125 VGRMR 129
V R+R
Sbjct: 182 VLRLR 196
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,319,375
Number of Sequences: 28460
Number of extensions: 221257
Number of successful extensions: 1066
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of query: 846
length of database: 4,897,600
effective HSP length: 98
effective length of query: 748
effective length of database: 2,108,520
effective search space: 1577172960
effective search space used: 1577172960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0288.8