TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0288.7
         (1771 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780705                                                              252  4e-67
TC18710                                                               216  9e-59
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...   181  9e-46
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...   148  8e-36
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,...   143  1e-35
BP046853                                                              143  3e-34
CN825682                                                              129  1e-33
BP060613                                                              130  2e-30
AV411435                                                              124  1e-28
CB828953                                                               61  7e-20
TC19924                                                                90  4e-18
AV767121                                                               76  4e-14
TC19966                                                                67  2e-11
AV780221                                                               64  2e-10
AU251850                                                               62  6e-10
CN825238                                                               62  6e-10
AV778296                                                               47  1e-09
CB826728                                                               52  2e-07
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)             53  4e-07
AV768875                                                               53  5e-07

>AV780705 
          Length = 524

 Score =  252 bits (643), Expect = 4e-67
 Identities = 123/174 (70%), Positives = 137/174 (78%), Gaps = 1/174 (0%)
 Frame = -2

Query: 1143 NLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWKETLLNQAGKEVLIKAI 1202
            NLLHM IWD PG YLGLPAIWGRNK HSL WIEE+VKEKLEGWKETLLNQAGKEVLIKAI
Sbjct: 523  NLLHMPIWDDPGHYLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAI 344

Query: 1203 IQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRGIHWRS-WEKMTLSKDEGGMGF 1261
            IQAIP YAM +VHFPKTFCNSL +LVA+FWWK QG+    +  +   K  LSK++GG+GF
Sbjct: 343  IQAIPSYAMTIVHFPKTFCNSLYALVADFWWKSQGEGAVEYTGAVGTK*PLSKEKGGVGF 164

Query: 1262 REFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWR 1315
            R+ R QNLA LA+QAWRVLTNPEALWV V+KS+YFPT             WMWR
Sbjct: 163  RDLRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPTPALCLLLWDGTHPWMWR 2


>TC18710 
          Length = 843

 Score =  216 bits (551), Expect(2) = 9e-59
 Identities = 107/218 (49%), Positives = 145/218 (66%)
 Frame = +2

Query: 853  GPDGLNGLFFKNHWATIQDSVCYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRP 912
            G DG+NGLF++ +   ++DSV  AI  F     +  EINET+V L+PKV  PES+ QFRP
Sbjct: 188  GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367

Query: 913  ISCCNYILKVISRIMVTRLKDDLNLLISPNQSAFVGGRLIQDNITVSQEAFHLLQRGESR 972
            IS C ++ KVIS+I V RLKD +  LISP QS F+ GR IQDN+ + QEAFH + R  + 
Sbjct: 368  ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547

Query: 973  MKDYMAIKVDMSKTYDRLEWTFLEKTLLAYGFHPIWTARVLTLVKGATYKLKVNGFLSST 1032
             +++  IK+DM+K YDR+EW FLE +LLA+GF   W   ++ LV G +Y  K+NG +   
Sbjct: 548  GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPK 727

Query: 1033 LTPGRGLRQGDPLSPYLFVLATDVLSFMLTQAQRDGEI 1070
            L P RGLRQGDP SPYLF+   +VLS ++  +   G +
Sbjct: 728  LLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMGNL 841



 Score = 29.6 bits (65), Expect(2) = 9e-59
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 813 DCLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPG 853
           +CL   P  V+ +LN +L    +  EI   V  LG L APG
Sbjct: 67  ECLDVVPSLVSQDLNQKLESQVTSEEIKAVVFSLGDLTAPG 189


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score =  181 bits (459), Expect = 9e-46
 Identities = 90/188 (47%), Positives = 129/188 (67%)
 Frame = -3

Query: 754 GDKNSKFFHASTLKRRNRNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIED 813
           GD N++FFHAST++RR+ NRI ++ DA G W EGQ +V  A V+++ +I+ S  +  + +
Sbjct: 569 GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRE 390

Query: 814 CLRGFPRKVTAELNNRLIMPASDAEIAEAVNLLGGLKAPGPDGLNGLFFKNHWATIQDSV 873
           CL   P+ VT  LN++L    S  EI EAV  +G LKAPG DG+NGLF++ +   +++ V
Sbjct: 389 CLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDV 210

Query: 874 CYAIKEFFST*NL*AEINETIVALVPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKD 933
             AI +FF    L  E+NET+V L+PK+   E++ QFRPISCC++I KVIS+I+V RLK 
Sbjct: 209 NNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKP 30

Query: 934 DLNLLISP 941
           D+  LISP
Sbjct: 29  DMVNLISP 6


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score =  148 bits (373), Expect = 8e-36
 Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 2/177 (1%)
 Frame = -3

Query: 653 QCSEVVAEGW--LKPLHNEDCWKDLENRIKSSKRTIWSWQRKTFKVAEKEIGRLKQELQS 710
           +C E + + W       +  C  +L  +  ++K  +  W  + F  A+KEI  LK +L+ 
Sbjct: 528 ECKETIKKAWDNTSETASSHC-SNLSGKTTNTKLALTEWHHQNFSRADKEIAELKNQLEH 352

Query: 711 KQDRPNHLVDWNEVKNIKLEIDTLWRQEELFWGQRSRVKWA*YGDKNSKFFHASTLKRRN 770
            Q+  N   DW E+K  K+ +  LWRQEELFW QRSR+KW   GDKN+KFFHAST++RR 
Sbjct: 351 LQNYSNSGEDWQEIKQRKMRLKDLWRQEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRE 172

Query: 771 RNRIDRVCDAQGTWKEGQTEVMHAFVSHYEEIFQSEGVNQIEDCLRGFPRKVTAELN 827
           RNRI+R+ D QGTW   Q  +       Y +I++S     I +CL   PR +   LN
Sbjct: 171 RNRIERIKDMQGTWVRSQLAINRDVPDFYPDIYKSTNRQNITECLNAVPRVIYESLN 1


>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
            MIG10, partial (18%)
          Length = 1118

 Score =  143 bits (360), Expect(2) = 1e-35
 Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 7/199 (3%)
 Frame = -3

Query: 1511 WFGSSLQWVVSPQGLGSFDVWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFN 1570
            WFGS LQW + P G   FD W +++   +   SL+  +D +TL+  LW+IW+ RN+ +F 
Sbjct: 1116 WFGSPLQWSIEPGGNLRFDRWFVERSQFILNHSLNHEEDLATLSFTLWAIWKNRNRVIFQ 937

Query: 1571 AIRPDPTFAI------QQVASTLSAIDLAKPVTEKVISDGNQN-TNQRPTAWRPPFGNLL 1623
               P+P   I      QQ A+ +S     K  T     + N N T+ R  +WRPP   + 
Sbjct: 936  LEEPNPVNTIFQIRHMQQDANLMSTSQSNKQTTR----ERNINVTSARDRSWRPPPLGVY 769

Query: 1624 KINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYSSSPLTAEASAIREGLSLAHNLG 1683
            K+N DASW +  P   VGV+IRD    L++G+ ++  + SP+ +EA A+REGL LA +LG
Sbjct: 768  KLNSDASWKAPSPSCTVGVVIRDNLGLLISGTASRPLAPSPIVSEALALREGLILARSLG 589

Query: 1684 CPEIIMESDSKILIDACKS 1702
               I+ ESD + LI+AC+S
Sbjct: 588  LDRILSESDCQPLIEACRS 532



 Score = 25.4 bits (54), Expect(2) = 1e-35
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 1741 LVAKMCMQNFLLDNWMFKLPQELRRALVLD 1770
            LVA++  Q  L+ NW++  P  L  AL  D
Sbjct: 533  LVAQLEFQGSLMRNWVYTPPHSLAVALAKD 444


>BP046853 
          Length = 612

 Score =  143 bits (360), Expect = 3e-34
 Identities = 76/136 (55%), Positives = 94/136 (68%)
 Frame = -3

Query: 1636 PQSAVGVLIRDKFSTLLAGSHAKVYSSSPLTAEASAIREGLSLAHNLGCPEIIMESDSKI 1695
            PQ+A+GVLIRDK+STLL+G+HAK+Y SSPLTAEA AIREGL+LA+NLGC E+++ESD+K 
Sbjct: 406  PQAALGVLIRDKYSTLLSGTHAKIYCSSPLTAEACAIREGLNLAYNLGCTEVVLESDNKS 227

Query: 1696 LIDACKSETLVGEASAILQDIFYLKRLFYRCDFAWANRERNNSAHLVAKMCMQNFLLDNW 1755
            L++ACK+  L+GEAS IL                            VAK CMQ+ L  NW
Sbjct: 226  LVEACKANALIGEASTIL----------------------------VAKACMQSLLSWNW 131

Query: 1756 MFKLPQELRRALVLDA 1771
            +F  PQELRRALV DA
Sbjct: 130  LFMPPQELRRALVDDA 83



 Score = 88.6 bits (218), Expect = 8e-18
 Identities = 40/69 (57%), Positives = 51/69 (72%)
 Frame = -1

Query: 1523 QGLGSFDVWLLQKITALQTISLDFNKDFSTLACILWSIWRGRNKAVFNAIRPDPTFAIQQ 1582
            +G+G  D WLLQ+IT L+ +S DF+++FS LA +LWSIWRGRN +VF AI PDP F IQQ
Sbjct: 612  EGMGPCDSWLLQRITILKRLSQDFDREFSLLASLLWSIWRGRNNSVFKAICPDPEFTIQQ 433

Query: 1583 VASTLSAID 1591
                LS +D
Sbjct: 432  ATRLLSTMD 406


>CN825682 
          Length = 626

 Score =  129 bits (323), Expect(2) = 1e-33
 Identities = 62/107 (57%), Positives = 78/107 (71%), Gaps = 2/107 (1%)
 Frame = -3

Query: 523 TALRFRDNTP--WCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMDVDLKGSR 580
           T  +F+ NT   W   GDFNEIL   EKEG R Q P+ +Q FR+F+  + LMD++LKG R
Sbjct: 336 TNYKFKSNTNTFWTCYGDFNEILHHQEKEGARDQDPTRIQVFRDFLDGANLMDLELKGCR 157

Query: 581 FTWHSNPRDGFVTREKIDRVLTNWSWRNIFPNASAMAYPQISSDHSP 627
           FTW SN R+G VT+E++DRVL NW+WR  +PNA+AMA P ISSDHSP
Sbjct: 156 FTWLSNLRNGLVTKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16



 Score = 33.5 bits (75), Expect(2) = 1e-33
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -1

Query: 504 TFVYGDPSSQRRRFLWPQITAL 525
           TF+Y +P  ++RR LWPQIT+L
Sbjct: 386 TFIYANPIFRQRRNLWPQITSL 321


>BP060613 
          Length = 378

 Score =  130 bits (326), Expect = 2e-30
 Identities = 54/108 (50%), Positives = 77/108 (71%)
 Frame = +1

Query: 1232 WWKGQGKDRGIHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVL 1291
            WW  +G  RG+HWR W+ +T  KDEGG+GF++F +QN A+LAKQAWR+L NP+ALWV +L
Sbjct: 46   WWSSKGT-RGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQIL 222

Query: 1292 KSVYFPTSDFLNASLGRNPSWMWRSLLAGRDFISRYIRWAVGGGLLIE 1339
            K++YFP  DFL  +     SW+W SLL GR+ + +  +W +G G  ++
Sbjct: 223  KALYFPHHDFLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETVQ 366


>AV411435 
          Length = 426

 Score =  124 bits (311), Expect = 1e-28
 Identities = 56/141 (39%), Positives = 80/141 (56%)
 Frame = +3

Query: 1391 VLQTPVSKLNQTDVLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIW 1450
            ++QTP S     D LFWP  P G+Y+V SG+   ++       L+S S +    LW TIW
Sbjct: 3    IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIW 182

Query: 1451 KSQLPQKVKVFLWKASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAV 1510
             +Q+P+KV+ FLW+A++N++ VK NL R+ +     CP+C +  E + H    C WTRAV
Sbjct: 183  GAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAV 362

Query: 1511 WFGSSLQWVVSPQGLGSFDVW 1531
            WFG  L +VV       F  W
Sbjct: 363  WFGCPLNFVVHEVHGMLFGAW 425


>CB828953 
          Length = 554

 Score = 60.8 bits (146), Expect(2) = 7e-20
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = -3

Query: 1609 NQRPTAWRPPFGNLLKINVDASWVSSVPQSAVGVLIRDKFSTLLAGSHAKVYSSSPL 1665
            N RP  WRPP   +LK+NVDASW +S P  ++G+ +RD+   L+AGS +K +S S L
Sbjct: 552  NDRP--WRPPLPRMLKLNVDASWKASSPLCSIGIAVRDEAGLLVAGSASKAFSHSAL 388



 Score = 55.1 bits (131), Expect(2) = 7e-20
 Identities = 28/76 (36%), Positives = 42/76 (54%)
 Frame = -2

Query: 1696 LIDACKSETLVGEASAILQDIFYLKRLFYRCDFAWANRERNNSAHLVAKMCMQNFLLDNW 1755
            L++AC+     GE  +I+ DI  L+R F  C F+W  R  N  AH +AK+   N L   W
Sbjct: 388  LVEACRDGKGQGEIHSIVADILNLRRHFQWCGFSWIPRNSNKVAHEIAKLNYLNDLGPYW 209

Query: 1756 MFKLPQELRRALVLDA 1771
            +F L   ++ A++ DA
Sbjct: 208  LFSLHPAVKSAVIHDA 161


>TC19924 
          Length = 525

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 47/103 (45%), Positives = 58/103 (55%)
 Frame = -2

Query: 1475 NLWRKRILPSGQCPVCCEAQETVEHMFFVCPWTRAVWFGSSLQWVVSPQGLGSFDVWLLQ 1534
            NL ++R+L S  CP+C  A ETVEH  F C  TR V  GS  QW  S      FD  LL 
Sbjct: 344  NLHKRRVLNSPLCPICFAAPETVEHAIFHCNGTRLVGLGSQFQWNTS--DASRFDSGLLS 171

Query: 1535 KITALQTISLDFNKDFSTLACILWSIWRGRNKAVFNAIRPDPT 1577
            KI  L+    +F ++ S+L C+LW IW+ RN  VF    PDPT
Sbjct: 170  KIECLRLREENFVQECSSLGCLLWEIWKTRNITVFEGKLPDPT 42


>AV767121 
          Length = 525

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 48/173 (27%), Positives = 82/173 (46%), Gaps = 5/173 (2%)
 Frame = +2

Query: 1182 LEGWKETLLNQAGKEVLIKAIIQAIPLYAMAMVHFPKTFCNSLNSLVANFWWKGQGKDRG 1241
            L  WK+  ++  G+  LI++++ A+PL+ ++    P     S   L+ NF W G   +  
Sbjct: 2    LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGSENENK 181

Query: 1242 IHWRSWEKMTLSKDEGGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDF 1301
            I    W  +   K+ GG+G ++    N A+L K  WR LT P++LW  V+++      D 
Sbjct: 182  IA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEA----QPDH 349

Query: 1302 LNASLGRNPSWMWRSLLA-----GRDFISRYIRWAVGGGLLIEVWGDNWLSSG 1349
             +       SW W  +L+        + S  ++  VG G   + W ++WL SG
Sbjct: 350  YSC----GSSW-WNDILSLCPEDADGWFSSGLKKLVGEGDQTKFWSEDWLGSG 493


>TC19966 
          Length = 522

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 33/47 (70%), Positives = 41/47 (87%)
 Frame = -2

Query: 1636 PQSAVGVLIRDKFSTLLAGSHAKVYSSSPLTAEASAIREGLSLAHNL 1682
            P+++VG +IRDKF+TLLAGS +KV++SSPLT EA AIREGL LA NL
Sbjct: 149  PRASVGAVIRDKFATLLAGSSSKVFASSPLTTEAQAIREGLILALNL 9


>AV780221 
          Length = 461

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 44/156 (28%), Positives = 72/156 (45%), Gaps = 7/156 (4%)
 Frame = +3

Query: 1198 LIKAIIQAIPLYAMAMVHFPKT-FCNSLNSLVANFWWKGQGKDRGIHWRSWEKMTLSKDE 1256
            LI++++ A+PL+ +     P   F  ++N+    F+ +     + I W  W  +   KDE
Sbjct: 9    LIRSVLIALPLFHLPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVCRPKDE 188

Query: 1257 GGMGFREFRMQNLAILAKQAWRVLTNPEALWVCVLKSVYFPTSDFLNASLGRNPSWMWRS 1316
            GG+G +   + N A+L K  WR+L   + LW  VL   Y       NA      SW W  
Sbjct: 189  GGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY------KNAIPQSASSW-WND 347

Query: 1317 LLA------GRDFISRYIRWAVGGGLLIEVWGDNWL 1346
            L +      G  ++ R +   +G G  ++ W +NWL
Sbjct: 348  LHSTCFEDGGGGWMQRGLCRRIGEGTEVKFWNENWL 455


>AU251850 
          Length = 343

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 35/95 (36%), Positives = 48/95 (49%), Gaps = 4/95 (4%)
 Frame = +2

Query: 398 PITMMILSWNCRGVAATPTGRELRTLCSKNKPTIVFLMETRSKKENLEVIRRSLGFDYLF 457
           P  M +LSWNCRG+ +      L+ L  K  P +VFLMET+ KK   E I    G     
Sbjct: 29  PTAMKLLSWNCRGLGSPRAVEALQRLVRKEIPQLVFLMETKLKKFETEKISLGFGLSNCL 208

Query: 458 TVNPRG----LSGGLALFWKREVHIQILHSSQNYI 488
            V+  G      GGLA++W   V + ++  S N+I
Sbjct: 209 IVDCVGDEKERKGGLAMWWNASVDVSLVSFSGNHI 313


>CN825238 
          Length = 692

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
 Frame = +3

Query: 1366 LISPHGEGWNSALVRSLFQPELALKVLQTPVSKLNQTDVLFWPHTPKGDYTVSSGF---E 1422
            L+ P+   WN  L+  LF  E A  +   P+      +   W  +  G ++V S +   +
Sbjct: 297  LLIPNARRWNVQLIDQLFPKETAAVIKSIPLGWRTTRNSCLWRWSRNGAFSVRSAYYNIQ 476

Query: 1423 IARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFLWKASHNSLAVKYNLWRKRIL 1482
            +A+    + Q  SS + + P   W+ +W++ +P K+K F ++ + N +  + NL R+ I 
Sbjct: 477  VAK----EMQTSSSAASSFP---WKKLWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIA 635

Query: 1483 PSGQCPVC-CEAQETVEHM 1500
               +CP C  +  E++ H+
Sbjct: 636  VQNECPTCNHQIPESMSHL 692


>AV778296 
          Length = 408

 Score = 47.4 bits (111), Expect(2) = 1e-09
 Identities = 19/29 (65%), Positives = 23/29 (78%)
 Frame = +3

Query: 585 SNPRDGFVTREKIDRVLTNWSWRNIFPNA 613
           S P  GFVTREKI+RV+ +W WR +FPNA
Sbjct: 144 SKPGGGFVTREKIERVVADWEWRALFPNA 230



 Score = 33.5 bits (75), Expect(2) = 1e-09
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 615 AMAYPQISSDHSPILLDLSPPTWSKTPFKYEVFW 648
           A AYP ISSDHSP++ + SP +   +P +    W
Sbjct: 235 ATAYPPISSDHSPMVFEPSPKSV*WSPIQIRAGW 336



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 630 LDLSPPTWSKTPFKYEVFWDEHEQCSEVVAEGW 662
           L+L+    S   FKYE   DEH +C EV+ + W
Sbjct: 281 LNLALNQSSGVQFKYERVGDEHVECKEVINKAW 379


>CB826728 
          Length = 509

 Score = 51.6 bits (122), Expect(2) = 2e-07
 Identities = 27/101 (26%), Positives = 45/101 (43%)
 Frame = +1

Query: 1404 VLFWPHTPKGDYTVSSGFEIARSNSIKPQALSSRSHNIPELLWRTIWKSQLPQKVKVFLW 1463
            V FWP +  G Y+  SG+E  R  +      +S +  +P L+W+T+W +    + K  +W
Sbjct: 205  VFFWPGSSDGWYSSKSGYEFIRLENKSLLPSTSPAAAVPSLIWKTVWSASSLPRCKEVMW 384

Query: 1464 KASHNSLAVKYNLWRKRILPSGQCPVCCEAQETVEHMFFVC 1504
            +A    L V+  L R+ +      P      E   H+   C
Sbjct: 385  RACAGYLPVRSALKRRGLDVDPSSPWSGLEDEAEVHVLLTC 507



 Score = 22.3 bits (46), Expect(2) = 2e-07
 Identities = 16/70 (22%), Positives = 29/70 (40%), Gaps = 2/70 (2%)
 Frame = +3

Query: 1339 EVWGDNWLSSGEALIQPHNA-PDMKVSELISPHGEG-WNSALVRSLFQPELALKVLQTPV 1396
            ++  D WL +   L+   +   D+++ ++      G WN  LV  +F P      L   +
Sbjct: 3    DILHDAWLPNSAPLVYCEDLFVDLQLKKVADLIENGRWNENLVSMVFSPSTTAVFLAVSL 182

Query: 1397 SKLNQTDVLF 1406
               +  D LF
Sbjct: 183  PLQSYEDCLF 212


>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
          Length = 912

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
 Frame = -3

Query: 1074 RFTPHSP-------PLTHLFFADDSLLFAEATVKEATSIIHILNLYNRASGQRINVAKSG 1126
            R +P SP        ++HL FAD+ ++F+   ++    I ++L+++   SG   N AKS 
Sbjct: 418  RISPQSPHWRCQNEEISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSE 239

Query: 1127 LIFGRSASNRVKRDISNLLHMAIWDSPGQYLGLPAIWGRNKCHSLAWIEERVKEKLEGWK 1186
            +          K  I+N+L       P + LG+P +  + K      + +R   KL+ W 
Sbjct: 238  VFI--LVKETTKNQITNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWT 65

Query: 1187 ETLLNQAGKEVLIKAII 1203
               L+ AG+  LI +I+
Sbjct: 64   GRSLSYAGRLQLINSIL 14


>AV768875 
          Length = 232

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 25/70 (35%), Positives = 39/70 (55%)
 Frame = +1

Query: 514 RRRFLWPQITALRFRDNTPWCLLGDFNEILFAHEKEGMRPQPPSVLQRFREFVHNSGLMD 573
           +R  LW  ++ +R   + PW L+GD NEILF  +  G     P+  QRF   + +  L+D
Sbjct: 1   QRDILWQHLSTIRASISIPWLLIGDMNEILFPSQVRGGEFH-PNRAQRFATVLDDCNLID 177

Query: 574 VDLKGSRFTW 583
           + + G +FTW
Sbjct: 178 LGMVGGKFTW 207


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.334    0.144    0.487 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,729,090
Number of Sequences: 28460
Number of extensions: 559006
Number of successful extensions: 4660
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 4535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4644
length of query: 1771
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1668
effective length of database: 1,966,220
effective search space: 3279654960
effective search space used: 3279654960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 62 (28.5 bits)