TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0284.4
         (247 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17908 similar to UP|PMM_ARATH (O80840) Probable phosphomannomu...   165  5e-56
AV776302                                                               92  6e-20
AV770601                                                               54  1e-09
TC8829                                                                 30  0.50
TC10622 similar to UP|O24316 (O24316) Acetyl-CoA carboxylase  (F...    27  3.3
BP085640                                                               26  7.3
AV765050                                                               26  7.3
TC13729 similar to UP|Q9FFC3 (Q9FFC3) Protease-like protein, par...    26  7.3
AV779448                                                               25  9.5

>TC17908 similar to UP|PMM_ARATH (O80840) Probable phosphomannomutase  (PMM)
           , partial (34%)
          Length = 574

 Score =  165 bits (417), Expect(2) = 5e-56
 Identities = 77/87 (88%), Positives = 82/87 (93%)
 Frame = +1

Query: 127 MLNVSPIGRNCSQEERDEFEKYDKVQNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQ 186
           MLNVSPIGR+CS EERDEFEKYDKVQ +RP+MVSVLREKFAHLNLTFSIGGQISFDVFPQ
Sbjct: 1   MLNVSPIGRDCSLEERDEFEKYDKVQYLRPRMVSVLREKFAHLNLTFSIGGQISFDVFPQ 180

Query: 187 GWDKTYCLRYLDGFNEIHFFGDKTYKG 213
            WD TYCLRYLDGFNEIHFFGD+T +G
Sbjct: 181 AWD*TYCLRYLDGFNEIHFFGDETLQG 261



 Score = 68.9 bits (167), Expect(2) = 5e-56
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +2

Query: 209 KTYKGGNDHEIYESERTIGHTVTSPEDTIKQC 240
           K YKGGNDH+IYESERTIGHTVTSPEDTIKQC
Sbjct: 248 KLYKGGNDHDIYESERTIGHTVTSPEDTIKQC 343


>AV776302 
          Length = 514

 Score = 92.4 bits (228), Expect = 6e-20
 Identities = 60/100 (60%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
 Frame = -1

Query: 127 MLNVSPIGRNCSQEERDEFEKYDKVQNIRPKMVSVLREKFAHLNLTFSI-GGQISFDVFP 185
           MLNVSP  R+CSQ ERDEFEKYDKVQN+RP MVSVLREKFAHLNLTFS    +  FDVF 
Sbjct: 514 MLNVSPTARDCSQTERDEFEKYDKVQNLRPHMVSVLREKFAHLNLTFSXWRTR*RFDVFL 335

Query: 186 Q--GWDKTYCLRYLDGFN-EIHF-FGDKTYKGGND--HEI 219
              G   +   RYL   + EIH  FGD+    G +  HEI
Sbjct: 334 SRLGTKHSLPCRYL*WVSIEIHIPFGDRNLTQGWELTHEI 215


>AV770601 
          Length = 163

 Score = 54.3 bits (129), Expect(2) = 1e-09
 Identities = 26/27 (96%), Positives = 27/27 (99%)
 Frame = +2

Query: 14  VDGTLTAPRKVANSEMLGFMQELRKVV 40
           +DGTLTAPRKVANSEMLGFMQELRKVV
Sbjct: 83  LDGTLTAPRKVANSEMLGFMQELRKVV 163



 Score = 23.9 bits (50), Expect(2) = 1e-09
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 1  MAVAKPGVIALFDV 14
          MAVAK GV+A FDV
Sbjct: 43 MAVAKAGVMAWFDV 84


>TC8829 
          Length = 511

 Score = 29.6 bits (65), Expect = 0.50
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 91  FLGDEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEER 142
           +L  + LK+  NF+   I+ ++  + R  F   RSG++N+ P   NC   +R
Sbjct: 372 YLAKQSLKDEENFSSLTISQINY-LSRKPFSVMRSGVINIWPCRNNCKWIDR 220


>TC10622 similar to UP|O24316 (O24316) Acetyl-CoA carboxylase  (Fragment) ,
           partial (42%)
          Length = 522

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 69  FSENGLVAHKQGKLIGTESLKTFLGDEKLKEFI---NFTLHYIADLDIPIKRGTFIEFR 124
           FS+  L +H QG ++    L ++LG  + K F+   N  L  +    + +  G F++FR
Sbjct: 325 FSDYTLCSHSQGSIMKFSKLGSYLGIHRQKLFLTGFNLLLQGLNGTRVSVSLG-FLKFR 152


>BP085640 
          Length = 331

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 188 WDKTYCLRYLDGFNEIH 204
           WD+TY + +L GF  +H
Sbjct: 279 WDQTYHISHLAGFQHVH 329


>AV765050 
          Length = 234

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 173 FSIGGQISFDVFPQGW 188
           F  GG I F VFP+GW
Sbjct: 160 FISGGIIPFSVFPKGW 113


>TC13729 similar to UP|Q9FFC3 (Q9FFC3) Protease-like protein, partial (15%)
          Length = 508

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  GGSDLIKISEQLGSTVTHDYDYVFSENGLVA 76
           G S+ +   E  GST  HD  ++F + GL A
Sbjct: 214 GRSEFVNAGEFSGSTSLHDGPHMFIKTGLFA 306


>AV779448 
          Length = 509

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 209 KTYKGGNDHEIYESERTIGHTVTS--PEDT 236
           +TYKGGN       +R +GH  +   PE+T
Sbjct: 123 ETYKGGNGRATRRVQRLVGHVPSI**PENT 212


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.140    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,529,806
Number of Sequences: 28460
Number of extensions: 42103
Number of successful extensions: 163
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of query: 247
length of database: 4,897,600
effective HSP length: 88
effective length of query: 159
effective length of database: 2,393,120
effective search space: 380506080
effective search space used: 380506080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)