TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0283.6
         (561 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8979 weakly similar to UP|Q8RY59 (Q8RY59) At1g32230/F3C3_1, pa...   103  6e-23
TC8978                                                                 30  0.79
BP084463                                                               29  1.8
TC15480 similar to UP|V712_ARATH (Q9SIQ9) Vesicle-associated mem...    28  5.1
BP068134                                                               27  6.7
TC11728                                                                27  6.7
BP064318                                                               27  8.8
AV771190                                                               27  8.8
NP459452 NDX2 homeobox protein [Lotus japonicus]                       27  8.8

>TC8979 weakly similar to UP|Q8RY59 (Q8RY59) At1g32230/F3C3_1, partial
           (12%)
          Length = 833

 Score =  103 bits (258), Expect = 6e-23
 Identities = 55/104 (52%), Positives = 73/104 (69%)
 Frame = +1

Query: 441 RDNSSGANSDSHCSGDPVQSASSAYNEIAGNGVACTQKIPKSPWMPLHMLIAAINDKVPP 500
           R N S  NS+S  S   +QS S    +     VA + K P+SPWMP  ML AAI +KVP 
Sbjct: 1   RKNVSAVNSNSQGSKSLLQSQSPT-EDTGITTVASSHKAPRSPWMPFPMLFAAITEKVPS 177

Query: 501 NDMSLIKENFELYKAKQISRDDFVKEMRLIVGDTLLRDTITTLQ 544
           NDM+LI  +++ +++K+I+RDDFVK++RLIVGDTLLR TIT+LQ
Sbjct: 178 NDMNLINMHYQQFRSKKITRDDFVKKLRLIVGDTLLRATITSLQ 309


>TC8978 
          Length = 506

 Score = 30.4 bits (67), Expect = 0.79
 Identities = 14/19 (73%), Positives = 17/19 (88%)
 Frame = +1

Query: 524 VKEMRLIVGDTLLRDTITT 542
           VK++RLI GDTLLR TIT+
Sbjct: 1   VKKLRLIFGDTLLRATITS 57


>BP084463 
          Length = 380

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 319 CELFTTKCTYGVGVHLAAISCPYASARY-CD 348
           C L T+ C Y +G  +  I C YA  RY CD
Sbjct: 77  CILITSTCEYKLGAKII*ILCTYAYKRYTCD 169


>TC15480 similar to UP|V712_ARATH (Q9SIQ9) Vesicle-associated membrane
           protein 712 (AtVAMP712), partial (53%)
          Length = 482

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = +3

Query: 539 TITTLQFMVHNIFFFFF 555
           T TT   ++H+IFFFFF
Sbjct: 6   TTTTFNSLIHHIFFFFF 56


>BP068134 
          Length = 462

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = -3

Query: 352 NGVRHLILCRIIMGNMELLCPSIGTSNVQ 380
           NG   L+L   + GN+ LLCP+  TS ++
Sbjct: 295 NGRPGLVLAMYLHGNLLLLCPTAQTSRLE 209


>TC11728 
          Length = 832

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -3

Query: 362 IIMGNMELLCPSIGTSNVQFQPSSSEYDNGVDDIQCPRYYTIWNMNISTYICPAFV 417
           I   +  + CPS+    VQ QP               + + IW++N+   IC AF+
Sbjct: 788 ITYNHCNVWCPSMLAKVVQTQPKPQTIHKSTSFSSKKKLFIIWDLNV---ICNAFL 630


>BP064318 
          Length = 331

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 391 GVDDIQCPRYYTIWNMNISTYICPA 415
           GVD ++ P+ +T WN+ I + +C A
Sbjct: 119 GVDIMRKPKRHTRWNLRIVSLLCAA 45


>AV771190 
          Length = 497

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 429 YFCGTVDKNNVSR 441
           YFCG+VD+NNV +
Sbjct: 253 YFCGSVDENNVKK 215


>NP459452 NDX2 homeobox protein [Lotus japonicus]
          Length = 2223

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 18/42 (42%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
 Frame = +1

Query: 115 NGRDLMLDFLHACQMDLKTGFIQPIAWIDKVGGYF-FPEVDV 155
           N  DLM   L AC + L TGF+ P  W + V      P+VDV
Sbjct: 100 NHMDLMSSTLVACNLYLLTGFLSP-QWQEMVPVLLEHPKVDV 222


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,858,044
Number of Sequences: 28460
Number of extensions: 135583
Number of successful extensions: 694
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of query: 561
length of database: 4,897,600
effective HSP length: 95
effective length of query: 466
effective length of database: 2,193,900
effective search space: 1022357400
effective search space used: 1022357400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)