BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0283.2
(142 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10986 similar to GB|AAL56097.1|18028661|AF334030 ORF91 {Helico... 290 7e-80
TC13685 similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800),... 32 0.055
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 31 0.072
TC16697 31 0.094
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 30 0.12
TC8319 weakly similar to UP|RK4_TOBAC (O80361) 50S ribosomal pro... 30 0.16
TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-... 30 0.16
TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase (L... 30 0.21
AV427209 30 0.21
TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE... 30 0.21
BP033767 29 0.27
TC11087 weakly similar to UP|Q8GS92 (Q8GS92) OJ1513_F02.5 protei... 29 0.36
TC8088 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like arabinogalac... 29 0.36
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 28 0.47
TC14294 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding pr... 28 0.47
TC14293 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding pr... 28 0.47
TC13330 similar to PIR|T08400|T08400 late embryonic abundant pro... 28 0.79
TC8719 similar to UP|Q8H0I0 (Q8H0I0) Beta-1,3-glucanase-like pro... 28 0.79
TC8195 similar to UP|Q7SEW0 (Q7SEW0) Predicted protein, partial ... 27 1.0
TC9205 27 1.0
>TC10986 similar to GB|AAL56097.1|18028661|AF334030 ORF91 {Helicoverpa zea
single nucleocapsid nucleopolyhedrovirus;}, partial
(15%)
Length = 655
Score = 290 bits (742), Expect = 7e-80
Identities = 141/142 (99%), Positives = 141/142 (99%)
Frame = +2
Query: 1 MGNAKIVLVVLCLAVCVGICRPDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDE 60
MGNAKIVLVVLCLAVCVGICRPDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDE
Sbjct: 101 MGNAKIVLVVLCLAVCVGICRPDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDE 280
Query: 61 PVLPRTTENLQTGFGTGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAE 120
PVLPRTTENLQTGFGTGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAE
Sbjct: 281 PVLPRTTENLQTGFGTGLGAPVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDIKDKAE 460
Query: 121 VAYEDAKDKAESAYQSAKKTVT 142
VAYEDAKDK ESAYQSAKKTVT
Sbjct: 461 VAYEDAKDKVESAYQSAKKTVT 526
>TC13685 similar to UP|Q9FJH5 (Q9FJH5) Gb|AAC98457.1 (At5g60800), partial
(37%)
Length = 585
Score = 31.6 bits (70), Expect = 0.055
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = -2
Query: 9 VVLCLAVCVGICRPDSPATS-----PSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVL 63
++ C C+ +C P SP+ S P+P SPP + S + P R P
Sbjct: 452 LLCCWFQCLCLCSPPSPSPSSAAETPAPPSSLSSPPGYPSTLWGPLCRKLSPSRCCSPPS 273
Query: 64 P 64
P
Sbjct: 272 P 270
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 31.2 bits (69), Expect = 0.072
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +3
Query: 22 PDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGAP 81
P S +TSPSPS S +PP+ AS A S P N P T G G P
Sbjct: 699 PPSASTSPSPSPVS-APPA-ASPAPGAESPSSSPTSNSPAGGPTATSPSPAGDSPAGGPP 872
Query: 82 VEAPAPG---PFASAPQPS 97
+P G P AS P S
Sbjct: 873 APSPTTGDTPPSASGPDVS 929
>TC16697
Length = 635
Score = 30.8 bits (68), Expect = 0.094
Identities = 25/85 (29%), Positives = 41/85 (47%), Gaps = 2/85 (2%)
Frame = -1
Query: 21 RPDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGA 80
R +PAT+P PS S SPP S + D S P+ + +L + G+
Sbjct: 518 RKPAPATAP-PSNSSQSPPPNPS-STDPTSPAPQPHPS----------HLSPASSSSQGS 375
Query: 81 PVEAPAPGPFASAPQ--PSSEAAQQ 103
PV +P+P P ++P P ++++Q
Sbjct: 374 PVPSPSPSPPITSPSSPPIGDSSRQ 300
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 30.4 bits (67), Expect = 0.12
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Frame = +3
Query: 7 VLVVLCLAVCVGICRPDSPATSP------SPSQKSDSPPSFASWAYDKFSHVFGPYRNDE 60
+L C+A G +P T+P +P+ +PP A+ A P +
Sbjct: 123 LLATSCVAQAPGAAPTQAPTTTPPPPPAAAPAPPPATPPPAATPAPTTTPPAATPAPSAS 302
Query: 61 PVLPRTTENLQTGFGTGLGAPVEAPAPGPFASAPQPSS 98
P P T + TG T + AP P AS P P++
Sbjct: 303 PPAPTPTAS-PTGAPTPSASSPPAPIPSGPASGPGPAA 413
>TC8319 weakly similar to UP|RK4_TOBAC (O80361) 50S ribosomal protein L4,
chloroplast precursor (R-protein L4), partial (30%)
Length = 650
Score = 30.0 bits (66), Expect = 0.16
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = -3
Query: 22 PDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPY 56
P SP+TSPSPS S S +++S + S + PY
Sbjct: 315 PSSPSTSPSPSSTSSSSSTYSS-SSSSLSWLLTPY 214
>TC9030 similar to GB|AAM63479.1|21554372|AY086477 phospholipase-like
protein {Arabidopsis thaliana;}, partial (53%)
Length = 596
Score = 30.0 bits (66), Expect = 0.16
Identities = 25/88 (28%), Positives = 37/88 (41%), Gaps = 6/88 (6%)
Frame = +1
Query: 24 SPATSPS---PSQKSDSPPSFASWAYDKFSHVFGPY---RNDEPVLPRTTENLQTGFGTG 77
SP+ P P+Q SP AS A S PY + D P P TT + + G+
Sbjct: 184 SPSGGPHSLRPNQSEPSPSCTASPASQAGSSSSPPYTSPKPDSPPAPSTTRDTASPTGSS 363
Query: 78 LGAPVEAPAPGPFASAPQPSSEAAQQAF 105
+P+ P+ + + PS A+ F
Sbjct: 364 RTSPMSTPSSMTASRSSIPSVPASIPRF 447
>TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase (LDH) ,
partial (49%)
Length = 866
Score = 29.6 bits (65), Expect = 0.21
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Frame = +1
Query: 24 SPATSPSPSQKSDSPPSFASWAYDKFSH-------VFGPYRNDEPVLPRTTENLQTGFGT 76
+PATS PS K SP + A + R P LPRT
Sbjct: 358 APATSAWPSLKPSSPKNSTKNALPSSTTNRTTPGGKGSTSRRPPPFLPRTRIQRLLSTTL 537
Query: 77 GLGAPVEAPAPGPFASAPQPSSEAAQQAFSYGKDKAYDI 115
L AP+ A +P A +P + + S ++Y +
Sbjct: 538 SLPAPISASSPPELARSPASPGSTSCRGTSPSSSRSYPL 654
>AV427209
Length = 354
Score = 29.6 bits (65), Expect = 0.21
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Frame = +2
Query: 24 SPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRND--------EPVLPRTTENL 70
SP SP PS S SPP ++ K + PY+N PVL + NL
Sbjct: 200 SPPPSPPPSSSSSSPPKWSC----KACTLLNPYKNSTCELCGTRSPVLSLSNSNL 352
>TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE11_17
{Arabidopsis thaliana;}, partial (24%)
Length = 585
Score = 29.6 bits (65), Expect = 0.21
Identities = 22/75 (29%), Positives = 29/75 (38%)
Frame = -1
Query: 22 PDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGAP 81
P PAT+ +P S SPP+ S PY + P P P
Sbjct: 204 PSHPATARAPQTPSHSPPASPS----------SPYPSSSPPQPHPPP-----------PP 88
Query: 82 VEAPAPGPFASAPQP 96
+E+P+P P PQP
Sbjct: 87 LESPSPQP---TPQP 52
>BP033767
Length = 541
Score = 29.3 bits (64), Expect = 0.27
Identities = 21/73 (28%), Positives = 26/73 (34%)
Frame = +3
Query: 22 PDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLGAP 81
P S +P P S SPP+ Y TT+N T F +P
Sbjct: 174 PPSQPPNPPPPSPSPSPPN-------------PKYPFSSTPTTTTTQNASTPFFPTYPSP 314
Query: 82 VEAPAPGPFASAP 94
P+P FAS P
Sbjct: 315 PPPPSPSSFASFP 353
>TC11087 weakly similar to UP|Q8GS92 (Q8GS92) OJ1513_F02.5 protein
(OJ1118_G09.13 protein), partial (6%)
Length = 689
Score = 28.9 bits (63), Expect = 0.36
Identities = 26/88 (29%), Positives = 36/88 (40%)
Frame = +1
Query: 14 AVCVGICRPDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTG 73
+ C P + ++PSPS + S PS S S P +P TT + +
Sbjct: 19 STCSKTTTPMATWSTPSPSTPTPSKPS--SPQIPPTSTPGSP----KPPATATTNSPSSS 180
Query: 74 FGTGLGAPVEAPAPGPFASAPQPSSEAA 101
T GAP P P + P PSS +A
Sbjct: 181 VSTSSGAPT----PKPSRTTPSPSSNSA 252
>TC8088 similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (69%)
Length = 1527
Score = 28.9 bits (63), Expect = 0.36
Identities = 24/83 (28%), Positives = 35/83 (41%)
Frame = +2
Query: 20 CRPDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTGLG 79
C P S +TSPSP K+ SP + +S S P + P P +
Sbjct: 278 CPPSSTSTSPSPP*KTSSPSTSSSTTLAPKSSTR*P--TEPPSSPPCSR----------- 418
Query: 80 APVEAPAPGPFASAPQPSSEAAQ 102
AP P P A++ P+S+ A+
Sbjct: 419 --PPAPPPEPPATSTSPTSKEAK 481
Score = 25.8 bits (55), Expect = 3.0
Identities = 26/88 (29%), Positives = 31/88 (34%), Gaps = 10/88 (11%)
Frame = +2
Query: 22 PDSPATS----PSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQTGFGTG 77
P SPA S PSPS S +PP S + P P T + T T
Sbjct: 212 PTSPARSTTAKPSPSSPSTTPPCPPS------------STSTSPSPP*KTSSPSTSSSTT 355
Query: 78 LGA------PVEAPAPGPFASAPQPSSE 99
L P E P+ P + P P E
Sbjct: 356 LAPKSSTR*PTEPPSSPPCSRPPAPPPE 439
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 28.5 bits (62), Expect = 0.47
Identities = 22/77 (28%), Positives = 32/77 (40%), Gaps = 1/77 (1%)
Frame = +3
Query: 22 PDSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPR-TTENLQTGFGTGLGA 80
P P PSP+ +++ PP F FS P + P LP ++ + T +
Sbjct: 72 PPPPPPPPSPNHRNNLPPPFPPSLTTSFS-TSSPASHPLPSLPSPSSAAVGPTSSTPPTS 248
Query: 81 PVEAPAPGPFASAPQPS 97
P A A A+ P PS
Sbjct: 249 PTSAAAATSSATPPSPS 299
>TC14294 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding protein-like
(At5g04170), partial (65%)
Length = 1192
Score = 28.5 bits (62), Expect = 0.47
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = +1
Query: 18 GICRPDSPATSPSPSQKSDSPP----SFASWAYDKFSHVF-GPYRNDEPVLPRTTENLQT 72
G P P +P PSQ PP +++ Y + S + PY+ P E+
Sbjct: 208 GAAPPSQPYGAPPPSQSYGGPPPPSQPYSASPYGQPSAPYAAPYQK-----PPKDESHSH 372
Query: 73 GFGTGLGAPVEAPAPG-PFAS 92
G G G G P A G PFAS
Sbjct: 373 GGGGGSGYPPPPSAYGSPFAS 435
>TC14293 similar to UP|Q9FYE4 (Q9FYE4) EF-hand calcium binding protein-like
(At5g04170), partial (18%)
Length = 540
Score = 28.5 bits (62), Expect = 0.47
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = +2
Query: 18 GICRPDSPATSPSPSQKSDSPP----SFASWAYDKFSHVF-GPYRNDEPVLPRTTENLQT 72
G P P +P PSQ PP +++ Y + S + PY+ P E+
Sbjct: 221 GAAPPSQPYGAPPPSQSYGGPPPPSQPYSASPYGQPSAPYAAPYQK-----PPKDESHSH 385
Query: 73 GFGTGLGAPVEAPAPG-PFAS 92
G G G G P A G PFAS
Sbjct: 386 GGGGGSGYPPPPSAYGSPFAS 448
>TC13330 similar to PIR|T08400|T08400 late embryonic abundant protein EMB8
homolog F18B3.70 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (21%)
Length = 434
Score = 27.7 bits (60), Expect = 0.79
Identities = 25/94 (26%), Positives = 40/94 (41%), Gaps = 1/94 (1%)
Frame = +3
Query: 14 AVCVGICRP-DSPATSPSPSQKSDSPPSFASWAYDKFSHVFGPYRNDEPVLPRTTENLQT 72
+ C+ + P SP P P + +PPS +S A+ S + P ++P T
Sbjct: 39 STCLLLLLPLSSP*PCPPPPSHTHTPPSKSSEAHVTVSSLLSP----SWLVPTTLSPSLL 206
Query: 73 GFGTGLGAPVEAPAPGPFASAPQPSSEAAQQAFS 106
G T + + AP P +S+ +SE A S
Sbjct: 207 GTAT*RPSSPPSSAPPPTSSSAVNASEPRTAALS 308
>TC8719 similar to UP|Q8H0I0 (Q8H0I0) Beta-1,3-glucanase-like protein,
partial (48%)
Length = 643
Score = 27.7 bits (60), Expect = 0.79
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +2
Query: 21 RPDSPATSPSPSQKSDSPPSFASW 44
RP SPAT+P P K + +SW
Sbjct: 353 RPTSPATTPPPKSKPSPSATKSSW 424
>TC8195 similar to UP|Q7SEW0 (Q7SEW0) Predicted protein, partial (3%)
Length = 933
Score = 27.3 bits (59), Expect = 1.0
Identities = 14/39 (35%), Positives = 16/39 (40%)
Frame = +1
Query: 9 VVLCLAVCVGICRPDSPATSPSPSQKSDSPPSFASWAYD 47
V CL + RP P SP P S P + SW D
Sbjct: 166 VSFCLWFGYPLLRPPPPPPSPPPWSFSSPPSTSVSWVAD 282
>TC9205
Length = 924
Score = 27.3 bits (59), Expect = 1.0
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 7 VLVVLCLAVCVGIC 20
+L+V+CL +C+GIC
Sbjct: 760 ILLVICLVICLGIC 801
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.311 0.128 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,361,281
Number of Sequences: 28460
Number of extensions: 38023
Number of successful extensions: 509
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of query: 142
length of database: 4,897,600
effective HSP length: 81
effective length of query: 61
effective length of database: 2,592,340
effective search space: 158132740
effective search space used: 158132740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0283.2