BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0283.1
(2478 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13225 285 6e-77
BP040781 89 2e-19
BG662087 70 5e-12
AV410603 49 1e-05
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 38 0.017
TC18698 37 0.049
AW720347 36 0.084
TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation prot... 35 0.14
TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, ... 34 0.24
TC9039 34 0.32
TC8834 weakly similar to UP|Q8RY57 (Q8RY57) AT5g65440/MNA5_17, p... 33 0.54
TC15102 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, ... 33 0.71
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 32 0.92
TC15785 similar to UP|Q94BV7 (Q94BV7) AT4g05020/T32N4_4, partial... 32 0.92
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 32 0.92
TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, c... 32 0.92
TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 32 1.6
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 31 2.1
AV420911 31 2.7
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 31 2.7
>TC13225
Length = 513
Score = 285 bits (729), Expect = 6e-77
Identities = 148/173 (85%), Positives = 155/173 (89%), Gaps = 2/173 (1%)
Frame = +3
Query: 456 IMTPEDKSTILEKKKENGEEDAVATLIYTIILHFIGDPSIFRERASSQLSNLYCPTMSDY 515
IMTPEDKSTILEKKKENGEEDAVATLIYTIILHFIGDPSIFRERASSQL+NLYCPTMSDY
Sbjct: 3 IMTPEDKSTILEKKKENGEEDAVATLIYTIILHFIGDPSIFRERASSQLANLYCPTMSDY 182
Query: 516 RWYKDTFFSKVTLREDGNNAFWKERFIAGLPRLMQSKVLDNLSLFNQGNPINFGSLSFGQ 575
RWYKDTFFSKVTLREDGN+AFWKERFIAGLPRLMQSKVLDNLSLFNQGNP+NFGSLSFGQ
Sbjct: 183 RWYKDTFFSKVTLREDGNSAFWKERFIAGLPRLMQSKVLDNLSLFNQGNPVNFGSLSFGQ 362
Query: 576 LHNTIVHTGIQ--VCTDFKLQNKMQKDMQISRKEVGSFCEQYGVEPLQAPSSK 626
LHNTIVHTGIQ + ++FK KDMQ S+K SFCE YGV APSSK
Sbjct: 363 LHNTIVHTGIQFVLTSNFKTN---AKDMQ-SQKRSSSFCEXYGV-TFTAPSSK 506
>BP040781
Length = 561
Score = 89.4 bits (220), Expect(2) = 2e-19
Identities = 63/132 (47%), Positives = 82/132 (61%)
Frame = +2
Query: 1626 GDLSKSLMISNYTNFIESSG*SGGQSSIFH*YNKPKLKHG*KPISLLKRARSNYPLHRLP 1685
G+L K + I N + *+GGQ+SI *+N+ LK G*+ ISLL +AR++ L
Sbjct: 65 GEL*KFMRIHNSISSTAFLK*NGGQNSISL*FNRQNLKLG*RLISLLSKARNSCQLPLFL 244
Query: 1686 VSLKKPHFFKKNQKSWLN*PLPALQWNFKKD*T*YQEVRNPIHQLKTPHQSKWKIIFKKM 1745
VS+KK HFFKK+Q S N*P PAL NFK+ * * VRN Q + HQS + FKKM
Sbjct: 245 VSIKKVHFFKKDQGS*PN*PQPALPKNFKRS*I*--*VRN---QAQILHQSTARTTFKKM 409
Query: 1746 RMTVLESVIIHS 1757
+MT S+IIH+
Sbjct: 410 KMTA*ASIIIHT 445
Score = 25.4 bits (54), Expect(2) = 2e-19
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 1605 WMNSSLCSQLLKPSHGY*LG 1624
W +S CSQLLK S G+* G
Sbjct: 3 WKANSSCSQLLKLSPGF*PG 62
>BG662087
Length = 373
Score = 69.7 bits (169), Expect = 5e-12
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Frame = +1
Query: 1085 GALRLVINYKPLNKVLKWIRYPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYK 1144
G R+ ++Y LNK YPLP+ L+ + S D SGY+QI + D K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 1145 TAFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTI-VYLDDVLVFS 1196
TAF+ +Y + +P GLKNA + YQ +M+ +F + + VYLD+++V S
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKS 354
>AV410603
Length = 162
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/43 (46%), Positives = 29/43 (66%)
Frame = +1
Query: 1105 YPLPNKTDLIKRLHKGTIFSKFDMKSGYYQISVREEDRYKTAF 1147
+P+P +L+ L FSK D++SGY+QI V+ EDR+KT F
Sbjct: 19 FPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVF 147
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 38.1 bits (87), Expect = 0.017
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Frame = -2
Query: 633 SKTKPQGYKKRKPFQKKPYE--QNPSTQQPTNKK--NVNPKKKN------VCWKCGKPGH 682
+++ P + + K FQKKP++ QN T + N P+ VC +C K GH
Sbjct: 482 NRSAPGRFDRNKSFQKKPFQRPQNRGTSSGYSHSFGNFVPRPTQSDTSEIVCHRCSKKGH 303
Query: 683 YANKC 687
+AN+C
Sbjct: 302 FANRC 288
>TC18698
Length = 808
Score = 36.6 bits (83), Expect = 0.049
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -2
Query: 1144 KTAFVVPFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMNFTI-VYLDDVLVFS 1196
KT + +Y + VMP GLKN + YQ +M+ IF+ + + VY++D++V S
Sbjct: 801 KTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKS 640
>AW720347
Length = 423
Score = 35.8 bits (81), Expect = 0.084
Identities = 24/89 (26%), Positives = 47/89 (51%), Gaps = 3/89 (3%)
Frame = +3
Query: 1336 RVNMSEKPKSKDQY*PPLGSSSTSK---DKALAITPLKSAGSSAPATPSKSSQRLTTSQI 1392
R++ SE ++ ++ P S++T+ + A P S+ + APA+PS S + + ++ +
Sbjct: 39 RISSSETSATRRRFSKPAPSTTTTSPTSSPSSAPPPSPSSPNGAPASPSPSRRSVNSTSL 218
Query: 1393 VKTPPQNQKAPLVPLANKYTVLTQSSSKS 1421
+ TPP + L PL + T L+ + S
Sbjct: 219 MSTPPAGKL--LSPLRSSSTRLSTPDTTS 299
>TC16098 homologue to UP|Q8LAQ5 (Q8LAQ5) Flower pigmentation protein ATAN11,
partial (79%)
Length = 919
Score = 35.0 bits (79), Expect = 0.14
Identities = 24/86 (27%), Positives = 39/86 (44%)
Frame = +1
Query: 1355 SSSTSKDKALAITPLKSAGSSAPATPSKSSQRLTTSQIVKTPPQNQKAPLVPLANKYTVL 1414
++ TS A TP K G+S P T + ++ + T S +PP + P ++ T
Sbjct: 88 TAPTSSKNAPRSTPTKPHGTSTP*TGASAATKSTASP---SPPSSNNTPTASRSSSSTTP 258
Query: 1415 TQSSSKSPVKPESTEYFEKPEGLSSL 1440
T S + + P +T + P SSL
Sbjct: 259 TARSDPTRISPSNT-HTHPPRPFSSL 333
>TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(58%)
Length = 881
Score = 34.3 bits (77), Expect = 0.24
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +2
Query: 617 VEPLQAPSSKARRINRSKTKPQGYKKRKP----FQKKPYEQNPSTQQPTNKKNVNPKKKN 672
++ + R I K +PQG + + ++++ +++ + ++ + N
Sbjct: 230 IDAMNGMDLDGRTITVDKAQPQGSSRDRDDGDRYRERGRDRDDRGDRDRSRGYGGSRGSN 409
Query: 673 --VCWKCGKPGHYANKCKTQ 690
C+KCGKPGH+A +C ++
Sbjct: 410 GGECFKCGKPGHFARECPSE 469
>TC9039
Length = 1218
Score = 33.9 bits (76), Expect = 0.32
Identities = 27/99 (27%), Positives = 41/99 (41%)
Frame = +2
Query: 589 TDFKLQNKMQKDMQISRKEVGSFCEQYGVEPLQAPSSKARRINRSKTKPQGYKKRKPFQK 648
+ FK+ K+ + S E+ SFC Q Q A ++ SK K + K +P
Sbjct: 623 SQFKISYNCPKE-KWSLNELISFCVQEEERLKQERKESAHFVSTSKDKGKRKKTVEP--- 790
Query: 649 KPYEQNPSTQQPTNKKNVNPKKKNVCWKCGKPGHYANKC 687
+N + P KK K+ + C+ C GH KC
Sbjct: 791 ----KNEAADAPAPKKQ---KEDDTCYFCNVSGHMKKKC 886
>TC8834 weakly similar to UP|Q8RY57 (Q8RY57) AT5g65440/MNA5_17, partial
(9%)
Length = 633
Score = 33.1 bits (74), Expect = 0.54
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Frame = +2
Query: 442 THGFTGQLRGWWDNIMTPEDKSTILEKKKENGE------------EDAVATLIYTIILHF 489
TH F RG+WD + ++ + LE +KEN +D A+ + ++ +
Sbjct: 38 THVFIAICRGYWDRM--GQEILSFLENRKENRSWYKGSRVAVSVLDDTFASQMQQLLGNS 211
Query: 490 IGDPSIFRERASSQLSNLYCPTMSDYR---WYKDTFFSKVTLREDG---NNAFWKERFIA 543
+ + + R ++ ++ C ++++ +Y K RE G NN +W F+A
Sbjct: 212 LQEKDLDPPRCIMEVRSMLCKDAANHKDNSFYF*ANTCKYHERETG*KDNNQWWSPNFVA 391
Query: 544 G 544
G
Sbjct: 392 G 394
>TC15102 similar to UP|Q7X9B3 (Q7X9B3) 9/13 hydroperoxide lyase, partial (68%)
Length = 1097
Score = 32.7 bits (73), Expect = 0.71
Identities = 29/82 (35%), Positives = 37/82 (44%), Gaps = 5/82 (6%)
Frame = +1
Query: 1351 PPLGSSSTSKDKALAITPLKSAGSSAPATPSKSSQRLTTSQI-VKTPPQNQKAPLVPLAN 1409
PP SS S K+ S+ SSAP +P TTS I + P+NQ+ P +
Sbjct: 451 PPTNSSKPSSCKSSLPNTTPSSLSSAPPSP-------TTSPISTPSSPENQEKPASTPPS 609
Query: 1410 KYTVLTQSSSKSPV----KPES 1427
T SSS SP+ KP S
Sbjct: 610 APPRSTSSSSSSPINTPRKPSS 675
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 32.3 bits (72), Expect = 0.92
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 15/158 (9%)
Frame = +2
Query: 621 QAPSSKARRINRSKTKPQG---YKKRKPFQKKPYEQNPSTQQPTNKKNVNPKKKNV---- 673
+A ++ AR +N K +G +++++ +++ Y ST++P K +
Sbjct: 257 RAATAAARNVNAYGQKEEGPSRWQEKREAKRQMYLM--STEKPVKLGERIGVKHTMSGSA 430
Query: 674 -CWKCGKPGHYANKCKTQQ-KINELDLDQKLKDSLISVLINSEDPHYSSEYEYEGDEDQD 731
C KC + GH+ +CK ++ I+ Q+LK+ + V ++ Y E D+++
Sbjct: 431 QCQKCYQGGHWTYECKNERVYISRPSRTQQLKNPKLRVNVSVS---YDLENNDVDDKEEK 601
Query: 732 INLV------EYSSDSHSSSEEERECVKDSSGFCDCAG 763
++ SDS S S+ E + SG G
Sbjct: 602 AKSSSKKAKRKHRSDSDSGSDSEDSVFETESGSSSVTG 715
>TC15785 similar to UP|Q94BV7 (Q94BV7) AT4g05020/T32N4_4, partial (43%)
Length = 854
Score = 32.3 bits (72), Expect = 0.92
Identities = 22/71 (30%), Positives = 31/71 (42%), Gaps = 5/71 (7%)
Frame = -2
Query: 1150 PFGHYEWNVMPQGLKNAPSEYQNIMNDIFYPYMN-----FTIVYLDDVLVFSKGIDQHVQ 1204
P GH WN N PS + + F Y++ F I + LVFSK D V+
Sbjct: 463 PDGHSIWN*-----SNFPSIFHFFSRNFFIRYLHNHGSGFHINTISSELVFSKSSDSFVK 299
Query: 1205 HLEKFIEIIKK 1215
H + I ++K
Sbjct: 298 HAQNMISSLQK 266
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 32.3 bits (72), Expect = 0.92
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 671 KNVCWKCGKPGHYANKCKTQQKINE 695
KN C++CG GH CK K NE
Sbjct: 428 KNKCYRCGDRGHVERNCKNSPKKNE 502
>TC8094 homologue to UP|EFTU_PEA (O24310) Elongation factor Tu, chloroplast
precursor (EF-Tu), partial (60%)
Length = 1092
Score = 32.3 bits (72), Expect = 0.92
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = +2
Query: 1352 PLGSSSTSKDKALAITPLKSAGSSAPATPSKSSQR-----LTTSQIVKTPPQNQKAPLVP 1406
P +++ + + PLKSA +++P+TP SS R TS + TP ++ LVP
Sbjct: 401 PPSATAPPRSTTRSTLPLKSAPAASPSTPPPSSTRPRRATTHTSTALVTPIMSRT*SLVP 580
Query: 1407 LANKYTVLTQSSSKSPVKPESTEYFEKPEGLSS 1439
++T SSS +P P KP+ SS
Sbjct: 581 --PRWTA-PSSSSPAPTAP-----CPKPKNTSS 655
>TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (42%)
Length = 587
Score = 31.6 bits (70), Expect = 1.6
Identities = 8/17 (47%), Positives = 16/17 (94%)
Frame = +1
Query: 674 CWKCGKPGHYANKCKTQ 690
C++CG+PGH+A +C+++
Sbjct: 166 CYECGEPGHFARECRSR 216
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 31.2 bits (69), Expect = 2.1
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +2
Query: 671 KNVCWKCGKPGHYANKC 687
K++CW C +PGH A+ C
Sbjct: 449 KSLCWNCKEPGHMASSC 499
Score = 30.4 bits (67), Expect = 3.5
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 611 FCEQYGVEPLQAPSSKARRINRSKTKPQGYKKRKPFQKKPYEQNPSTQQPTNKKNVNP-- 668
FC VE + K +RS+++ + R P +K S + +++
Sbjct: 158 FC*SIVVEV*KEEKRKMSSDSRSRSRS---RSRSPMDRKIRSDRFSYRDAPYRRDSRRGF 328
Query: 669 KKKNVCWKCGKPGHYANKC 687
+ N+C C +PGH+A +C
Sbjct: 329 SRDNLCKNCKRPGHFAREC 385
>AV420911
Length = 418
Score = 30.8 bits (68), Expect = 2.7
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +2
Query: 674 CWKCGKPGHYANKCK 688
C++CG+PGH+A +C+
Sbjct: 374 CYECGEPGHFARECR 418
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 30.8 bits (68), Expect = 2.7
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +1
Query: 674 CWKCGKPGHYANKCK 688
C++CG+PGH+A +C+
Sbjct: 379 CYECGEPGHFARECR 423
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,005,145
Number of Sequences: 28460
Number of extensions: 607534
Number of successful extensions: 4017
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 3521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3876
length of query: 2478
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2373
effective length of database: 1,909,300
effective search space: 4530768900
effective search space used: 4530768900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0283.1