TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0281b.2
         (124 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP056651                                                               53  2e-13
CN825682                                                               43  2e-05
AV768875                                                               26  1.7
AV776133                                                               26  2.3
AW719682                                                               25  3.0
TC7850 similar to GB|AAG24884.1|10946379|AF303941 ribulose-1,5-b...    25  3.0
AV422786                                                               25  3.9
TC15455                                                                25  5.1
TC16579 weakly similar to UP|AAR82740 (AAR82740) SD09672p (Fragm...    25  5.1
TC12299                                                                24  6.6
BP071938                                                               24  6.6
TC11325 similar to UP|Q8LNX5 (Q8LNX5) Plasma membrane intrinsic ...    24  6.6
AV765554                                                               24  8.7
TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%)         24  8.7
TC18314 homologue to UP|Q8LSH9 (Q8LSH9) Ubiquitin-like protein S...    24  8.7
AV408330                                                               24  8.7

>BP056651 
          Length = 564

 Score = 52.8 bits (125), Expect(2) = 2e-13
 Identities = 24/46 (52%), Positives = 30/46 (65%)
 Frame = +3

Query: 45  LSLIEPPAVGKKYTWFRPNGQAASRLDRFLLSSDWCSCWPHGVQTV 90
           + L + P VG+KYTW R NG+A SRLDRFL+S  W + W    Q V
Sbjct: 426 MELDDIPLVGRKYTWVRSNGKARSRLDRFLVSHQWNTSWXDCAQYV 563



 Score = 36.2 bits (82), Expect(2) = 2e-13
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 7   FCIAGDFNVVARSEERMGI-SDSIYGRSDMADFKAFLSNLSLIEPP 51
           +C+AGDFN V RSEER G   +   G  +M +F  F+   + +  P
Sbjct: 310 WCMAGDFNSVRRSEERRGTHGEGSSGAGEMEEFNDFIDEWNWMTSP 447


>CN825682 
          Length = 626

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
 Frame = -3

Query: 1   NTGISCFCIAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWF 60
           NT  +C+   GDFN +   +E+ G  D    R  +  F+ FL   +L++    G ++TW 
Sbjct: 309 NTFWTCY---GDFNEILHHQEKEGARDQDPTRIQV--FRDFLDGANLMDLELKGCRFTWL 145

Query: 61  RP--NGQAAS-RLDRFLLSSDWCSCWPHGVQTVMARSLSDHCP 100
               NG     RLDR L++  W   +P+     +    SDH P
Sbjct: 144 SNLRNGLVTKERLDRVLVNWTWRLDYPNATAMALPIISSDHSP 16


>AV768875 
          Length = 232

 Score = 26.2 bits (56), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +1

Query: 38  FKAFLSNLSLIEPPAVGKKYTWFR 61
           F   L + +LI+   VG K+TWFR
Sbjct: 142 FATVLDDCNLIDLGMVGGKFTWFR 213


>AV776133 
          Length = 533

 Score = 25.8 bits (55), Expect = 2.3
 Identities = 20/67 (29%), Positives = 28/67 (40%), Gaps = 3/67 (4%)
 Frame = +3

Query: 61  RPNGQAASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVL-- 118
           +P   + S   + LL   W SCW     T    SL D C  + R  + +  P+  R+L  
Sbjct: 27  QPQINSLSNHQQLLLFRPWISCW---CSTTRRVSLPDPCLFLHR-MNSSQPPKLLRLLGR 194

Query: 119 -NCWFSD 124
            N W  D
Sbjct: 195 GNTWQCD 215


>AW719682 
          Length = 480

 Score = 25.4 bits (54), Expect = 3.0
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 37  DFKAFLSNLSLIEPPAVGKKYTWFRPNGQAASRLDRFLLSSDWCSCWP 84
           + KAF +NLSL+    +   Y  F       +    F LS    SC P
Sbjct: 176 ELKAFWNNLSLLNAKFIILSYLSFSCKSLCTNSTGSFNLSGSVTSCLP 33


>TC7850 similar to GB|AAG24884.1|10946379|AF303941
           ribulose-1,5-bisphosphate carboxylase small subunit
           rbcS3 {Glycine max;} , partial (98%)
          Length = 796

 Score = 25.4 bits (54), Expect = 3.0
 Identities = 15/51 (29%), Positives = 24/51 (46%)
 Frame = -1

Query: 51  PAVGKKYTWFRPNGQAASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPV 101
           P+  +K+ WF+    AAS L   +  S   +C  HG QT+    +    P+
Sbjct: 448 PSKPEKHQWFQT--WAASTLSSNVHHSILVTCGSHGTQTLSQSQIPSKEPI 302


>AV422786 
          Length = 427

 Score = 25.0 bits (53), Expect = 3.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 70  LDRFLLSSDWCSCW 83
           LD F  S+ WCSCW
Sbjct: 258 LDIFGGSNTWCSCW 217


>TC15455 
          Length = 615

 Score = 24.6 bits (52), Expect = 5.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 70  LDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFR-STDMNWGPR 113
           L  + + S W S WPH  Q        D  P +FR    +++GPR
Sbjct: 329 LSMYPVISFWDSVWPHDYQRFQRVVQKD--PSIFRKQLPLSYGPR 201


>TC16579 weakly similar to UP|AAR82740 (AAR82740) SD09672p (Fragment),
           partial (5%)
          Length = 705

 Score = 24.6 bits (52), Expect = 5.1
 Identities = 8/13 (61%), Positives = 9/13 (68%)
 Frame = -3

Query: 73  FLLSSDWCSCWPH 85
           F   SDWCSC+ H
Sbjct: 610 FWALSDWCSCFSH 572


>TC12299 
          Length = 566

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 73  FLLSSDWCSCWPHGVQ 88
           FL  + W S WP G+Q
Sbjct: 308 FLRKNSWTSNWPFGIQ 355


>BP071938 
          Length = 317

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 8/13 (61%), Positives = 9/13 (68%)
 Frame = +2

Query: 73  FLLSSDWCSCWPH 85
           FL  S WC C+PH
Sbjct: 218 FLFLSLWCICFPH 256


>TC11325 similar to UP|Q8LNX5 (Q8LNX5) Plasma membrane intrinsic protein,
           partial (41%)
          Length = 427

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (74%)
 Frame = -1

Query: 72  RFLLSSDWCSCW 83
           RFLL S  C+CW
Sbjct: 112 RFLLGSSLCTCW 77


>AV765554 
          Length = 410

 Score = 23.9 bits (50), Expect = 8.7
 Identities = 7/8 (87%), Positives = 8/8 (99%)
 Frame = +2

Query: 81  SCWPHGVQ 88
           SCWPHGV+
Sbjct: 137 SCWPHGVR 160


>TC17200 similar to UP|Q84VX5 (Q84VX5) At4g02100, partial (27%)
          Length = 850

 Score = 23.9 bits (50), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (74%)
 Frame = -1

Query: 38  FKAFLSNLSLIEPPAV 53
           F  FL+NLS+ EPP +
Sbjct: 343 FDVFLNNLSVCEPPVL 296


>TC18314 homologue to UP|Q8LSH9 (Q8LSH9) Ubiquitin-like protein SMT3
           (Fragment), complete
          Length = 608

 Score = 23.9 bits (50), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 81  SCWPHGVQTVMARSLSDHCPVMFRST 106
           SC P  ++T     + +HC  M RST
Sbjct: 99  SCLPSWLETPPPDDIFEHCDAMRRST 22


>AV408330 
          Length = 316

 Score = 23.9 bits (50), Expect = 8.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 80  CSCWPHGVQTVMARSLSDHCPVMF 103
           C CWP  V T M  S+ D     F
Sbjct: 298 CVCWPS*VVTTMLGSVKDRSTRFF 227


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.137    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,832,538
Number of Sequences: 28460
Number of extensions: 37369
Number of successful extensions: 279
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of query: 124
length of database: 4,897,600
effective HSP length: 79
effective length of query: 45
effective length of database: 2,649,260
effective search space: 119216700
effective search space used: 119216700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)