TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0280a.7
         (121 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP062550                                                               38  5e-04
AW720071                                                               32  0.039
TC9047                                                                 28  0.56
TC11199                                                                26  2.1
AW719943                                                               25  2.8
TC8771 homologue to UP|Q39862 (Q39862) Homeobox-leucine zipper p...    25  2.8
TC11877 similar to GB|AAP37836.1|30725628|BT008477 At2g39450 {Ar...    25  3.6
TC16208 similar to UP|Q8S902 (Q8S902) Syringolide-induced protei...    24  6.2
TC12130 similar to UP|Q93YF5 (Q93YF5) SET-domain-containing prot...    24  8.1

>BP062550 
          Length = 525

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 16/22 (72%), Positives = 19/22 (85%)
 Frame = -3

Query: 100 HNVSLPASFCVERSVDDEETME 121
           HNVSLPA+ CVE+  DD+ETME
Sbjct: 523 HNVSLPATTCVEKRNDDDETME 458


>AW720071 
          Length = 377

 Score = 31.6 bits (70), Expect = 0.039
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYV 62
           NR+SQ  +++ L+++   ++GW V + + I  G+ + EY+
Sbjct: 258 NRVSQLGIKFQLEIFKTPTRGWGVRSLNSIPSGSFICEYI 377


>TC9047 
          Length = 795

 Score = 27.7 bits (60), Expect = 0.56
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = -2

Query: 72  VIDSVSECGFEIDCLKI 88
           + + VS CGF IDCL+I
Sbjct: 308 IYNRVSSCGFSIDCLRI 258


>TC11199 
          Length = 743

 Score = 25.8 bits (55), Expect = 2.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 52  ILFGTPVLEYVKELRKNVELVIDSVSECGFEIDCLKIINEVEGRNRLLHN 101
           +L     L   + + +NV L IDSV E      C++++ +    NR L N
Sbjct: 384 LLSSLDALVETRNVSRNVNLAIDSVGE------CVQLMEDCSRANRHLSN 515


>AW719943 
          Length = 508

 Score = 25.4 bits (54), Expect = 2.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 58  VLEYVKE---LRKNVELVIDSVSECGFEIDCLKIINEVEG 94
           +LEY  E   L +   L   SVS  GFE+D   I+ E+ G
Sbjct: 326 ILEYRDESQRLDQCSRLYDSSVSNDGFEVDACHIVQELGG 445


>TC8771 homologue to UP|Q39862 (Q39862) Homeobox-leucine zipper protein,
           partial (20%)
          Length = 953

 Score = 25.4 bits (54), Expect = 2.8
 Identities = 8/12 (66%), Positives = 12/12 (99%)
 Frame = +1

Query: 50  DFILFGTPVLEY 61
           DF+LFG+P+LE+
Sbjct: 520 DFVLFGSPILEF 555


>TC11877 similar to GB|AAP37836.1|30725628|BT008477 At2g39450 {Arabidopsis
           thaliana;}, partial (77%)
          Length = 1119

 Score = 25.0 bits (53), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +2

Query: 71  LVIDSVSEC---GFEIDCLKIINE 91
           +VIDSV EC   G++I C ++ +E
Sbjct: 929 MVIDSVGECEFLGWKISCTRVSSE 1000


>TC16208 similar to UP|Q8S902 (Q8S902) Syringolide-induced protein 19-1-5,
           partial (62%)
          Length = 628

 Score = 24.3 bits (51), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 85  CLKIINEVEGRNRLLHNVSLP 105
           C+KI+  VE +  LL +VSLP
Sbjct: 465 CVKILGGVEPQVELLFSVSLP 403


>TC12130 similar to UP|Q93YF5 (Q93YF5) SET-domain-containing protein,
           partial (16%)
          Length = 499

 Score = 23.9 bits (50), Expect = 8.1
 Identities = 10/28 (35%), Positives = 16/28 (56%)
 Frame = +3

Query: 23  NRISQKDLQYCLQVYLKISKGWAVNTRD 50
           NR+SQ  L+  L+ +    KGW + + D
Sbjct: 408 NRVSQGGLKLRLEXFRTKGKGWGLRSWD 491


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.337    0.148    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,086,817
Number of Sequences: 28460
Number of extensions: 23801
Number of successful extensions: 158
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 121
length of database: 4,897,600
effective HSP length: 79
effective length of query: 42
effective length of database: 2,649,260
effective search space: 111268920
effective search space used: 111268920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 49 (23.5 bits)