
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0280a.7
(121 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP062550 38 5e-04
AW720071 32 0.039
TC9047 28 0.56
TC11199 26 2.1
AW719943 25 2.8
TC8771 homologue to UP|Q39862 (Q39862) Homeobox-leucine zipper p... 25 2.8
TC11877 similar to GB|AAP37836.1|30725628|BT008477 At2g39450 {Ar... 25 3.6
TC16208 similar to UP|Q8S902 (Q8S902) Syringolide-induced protei... 24 6.2
TC12130 similar to UP|Q93YF5 (Q93YF5) SET-domain-containing prot... 24 8.1
>BP062550
Length = 525
Score = 37.7 bits (86), Expect = 5e-04
Identities = 16/22 (72%), Positives = 19/22 (85%)
Frame = -3
Query: 100 HNVSLPASFCVERSVDDEETME 121
HNVSLPA+ CVE+ DD+ETME
Sbjct: 523 HNVSLPATTCVEKRNDDDETME 458
>AW720071
Length = 377
Score = 31.6 bits (70), Expect = 0.039
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRDFILFGTPVLEYV 62
NR+SQ +++ L+++ ++GW V + + I G+ + EY+
Sbjct: 258 NRVSQLGIKFQLEIFKTPTRGWGVRSLNSIPSGSFICEYI 377
>TC9047
Length = 795
Score = 27.7 bits (60), Expect = 0.56
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = -2
Query: 72 VIDSVSECGFEIDCLKI 88
+ + VS CGF IDCL+I
Sbjct: 308 IYNRVSSCGFSIDCLRI 258
>TC11199
Length = 743
Score = 25.8 bits (55), Expect = 2.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 52 ILFGTPVLEYVKELRKNVELVIDSVSECGFEIDCLKIINEVEGRNRLLHN 101
+L L + + +NV L IDSV E C++++ + NR L N
Sbjct: 384 LLSSLDALVETRNVSRNVNLAIDSVGE------CVQLMEDCSRANRHLSN 515
>AW719943
Length = 508
Score = 25.4 bits (54), Expect = 2.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 58 VLEYVKE---LRKNVELVIDSVSECGFEIDCLKIINEVEG 94
+LEY E L + L SVS GFE+D I+ E+ G
Sbjct: 326 ILEYRDESQRLDQCSRLYDSSVSNDGFEVDACHIVQELGG 445
>TC8771 homologue to UP|Q39862 (Q39862) Homeobox-leucine zipper protein,
partial (20%)
Length = 953
Score = 25.4 bits (54), Expect = 2.8
Identities = 8/12 (66%), Positives = 12/12 (99%)
Frame = +1
Query: 50 DFILFGTPVLEY 61
DF+LFG+P+LE+
Sbjct: 520 DFVLFGSPILEF 555
>TC11877 similar to GB|AAP37836.1|30725628|BT008477 At2g39450 {Arabidopsis
thaliana;}, partial (77%)
Length = 1119
Score = 25.0 bits (53), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Frame = +2
Query: 71 LVIDSVSEC---GFEIDCLKIINE 91
+VIDSV EC G++I C ++ +E
Sbjct: 929 MVIDSVGECEFLGWKISCTRVSSE 1000
>TC16208 similar to UP|Q8S902 (Q8S902) Syringolide-induced protein 19-1-5,
partial (62%)
Length = 628
Score = 24.3 bits (51), Expect = 6.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 85 CLKIINEVEGRNRLLHNVSLP 105
C+KI+ VE + LL +VSLP
Sbjct: 465 CVKILGGVEPQVELLFSVSLP 403
>TC12130 similar to UP|Q93YF5 (Q93YF5) SET-domain-containing protein,
partial (16%)
Length = 499
Score = 23.9 bits (50), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = +3
Query: 23 NRISQKDLQYCLQVYLKISKGWAVNTRD 50
NR+SQ L+ L+ + KGW + + D
Sbjct: 408 NRVSQGGLKLRLEXFRTKGKGWGLRSWD 491
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.337 0.148 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,086,817
Number of Sequences: 28460
Number of extensions: 23801
Number of successful extensions: 158
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 121
length of database: 4,897,600
effective HSP length: 79
effective length of query: 42
effective length of database: 2,649,260
effective search space: 111268920
effective search space used: 111268920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 49 (23.5 bits)
Lotus: description of TM0280a.7