BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0280a.5
(151 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19307 similar to GB|CAB62537.1|6562381|HBR012583 pseudo-hevein... 116 5e-32
BP040789 30 0.14
TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger prote... 27 1.5
TC8611 homologue to UP|GAE1_PEA (Q43070) UDP-glucose 4-epimerase... 27 2.0
TC10559 26 2.6
TC9123 similar to UP|O48879 (O48879) Ribosomal protein L22 (Frag... 26 2.6
TC16092 similar to GB|AAH13720.1|15489231|BC013720 BC013720 prot... 25 5.8
CB828502 25 5.8
BP051467 25 7.5
TC14075 homologue to UP|PRP2_MEDTR (Q40375) Repetitive proline-r... 25 7.5
TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related... 25 7.5
AV769130 24 9.8
TC17026 homologue to UP|GAE2_CYATE (O65781) UDP-glucose 4-epimer... 24 9.8
TC17723 24 9.8
>TC19307 similar to GB|CAB62537.1|6562381|HBR012583 pseudo-hevein {Hevea
brasiliensis;} , partial (39%)
Length = 529
Score = 116 bits (291), Expect(2) = 5e-32
Identities = 50/76 (65%), Positives = 58/76 (75%)
Frame = +1
Query: 55 AGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRDSCGKCLRVRNTATGDEATVRIVDQC 114
+G YCATW+A K AWR KYGWTAFCGP G G+ SCG+CLRV N+ TG + TVRIVDQC
Sbjct: 301 SGTYCATWDAGKSWAWRSKYGWTAFCGPVGPRGQASCGRCLRVTNSRTGAQQTVRIVDQC 480
Query: 115 ANGGLDLDVNVFRRLD 130
ANGGLD D V+ + D
Sbjct: 481 ANGGLDWDWGVYSKSD 528
Score = 35.8 bits (81), Expect(2) = 5e-32
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +3
Query: 30 GQSANNVMATYNLYNPQQIGWNL 52
G+SA+NV A+Y+ Y P+Q+GW++
Sbjct: 231 GESASNVYASYHYYRPEQVGWDV 299
>BP040789
Length = 547
Score = 30.4 bits (67), Expect = 0.14
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = -2
Query: 43 YNPQQIGWNLL----TAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRDSCGKCLRVR 98
Y+ Q N++ T + W P++ +GW F RD CG R+
Sbjct: 483 YSTQTSSLNIILPDDTLDVWTLKWADGMPISVEFGHGWYEFGKEKRIRARDQCGSIRRII 304
Query: 99 NTATG 103
T TG
Sbjct: 303 QTPTG 289
>TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger protein RHA2a
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (35%)
Length = 442
Score = 26.9 bits (58), Expect = 1.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 73 KYGWTAFCGPAGAHGRDSCGKCLRV 97
K WT+ C G H R + KC RV
Sbjct: 306 KIAWTSGCRNVGQHARFAGNKCCRV 380
>TC8611 homologue to UP|GAE1_PEA (Q43070) UDP-glucose 4-epimerase
(Galactowaldenase) (UDP-galactose 4-epimerase) , partial
(32%)
Length = 543
Score = 26.6 bits (57), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 58 YCATWNANKPLAWRKKYGWTAFC 80
Y +T A K L+W+ KYG C
Sbjct: 212 YASTEKAEKELSWKAKYGVEEMC 280
>TC10559
Length = 456
Score = 26.2 bits (56), Expect = 2.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 72 KKYGWTAFCGPAGAHGRDSC 91
+K GW FCG G R SC
Sbjct: 218 EKSGWHGFCGGDGGQRRRSC 277
>TC9123 similar to UP|O48879 (O48879) Ribosomal protein L22 (Fragment),
partial (85%)
Length = 942
Score = 26.2 bits (56), Expect = 2.6
Identities = 25/95 (26%), Positives = 38/95 (39%), Gaps = 11/95 (11%)
Frame = -3
Query: 5 ISSSITQRKLSIVAV-WWLIAATFAN-----GQSA-----NNVMATYNLYNPQQIGWNLL 53
++S++ KL ++ WWL A N G A +N+M+ + P+ +
Sbjct: 541 LTSALLITKLDLLKPRWWLALAPAENTIFRMGSQAR*GMSSNIMSVSSYGRPRI*S---I 371
Query: 54 TAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGR 88
T A A +P A Y W C P GA R
Sbjct: 370 TLRALSADVRICRPTA*ASTYCWLVSCPPKGARAR 266
>TC16092 similar to GB|AAH13720.1|15489231|BC013720 BC013720 protein {Mus
musculus;} , partial (4%)
Length = 629
Score = 25.0 bits (53), Expect = 5.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 50 WNLLTAGAYCATWNANKPLAWRKK 73
W L++ CA+W ++ A RK+
Sbjct: 72 WKLVSPTTVCASWRTHRAAAGRKR 1
>CB828502
Length = 536
Score = 25.0 bits (53), Expect = 5.8
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 53 LTAGAYCATWNANKPLAWRKKYGWTA 78
LTA A T NAN WR K WTA
Sbjct: 70 LTAPAEVHTKNANNCRRWR*K*RWTA 147
>BP051467
Length = 528
Score = 24.6 bits (52), Expect = 7.5
Identities = 12/43 (27%), Positives = 20/43 (45%), Gaps = 4/43 (9%)
Frame = +3
Query: 72 KKYGWTAFCGPAGA----HGRDSCGKCLRVRNTATGDEATVRI 110
+KYGW CG G H + K L++++ E T ++
Sbjct: 339 EKYGWKYGCGAKGCTKLFHASEFVHKHLKLKHPELAVEQTTKV 467
>TC14075 homologue to UP|PRP2_MEDTR (Q40375) Repetitive proline-rich cell
wall protein 2 precursor, partial (98%)
Length = 1524
Score = 24.6 bits (52), Expect = 7.5
Identities = 11/37 (29%), Positives = 16/37 (42%)
Frame = -1
Query: 20 WWLIAATFANGQSANNVMATYNLYNPQQIGWNLLTAG 56
WWL+ F N N + + N + + W LL G
Sbjct: 318 WWLLYRRFVNWGLLNWGLVHWGFLNRRFVHWRLLYWG 208
Score = 24.6 bits (52), Expect = 7.5
Identities = 14/55 (25%), Positives = 21/55 (37%)
Frame = -1
Query: 20 WWLIAATFANGQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKY 74
WWL+ F N N + L + + W LL G + + + WR Y
Sbjct: 378 WWLLHRRFVNWGLLNRGFVHWWLLYRRFVNWGLLNWGLVHWGFLNRRFVHWRLLY 214
>TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related protein
homolog F14M19.60 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (78%)
Length = 914
Score = 24.6 bits (52), Expect = 7.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 13 KLSIVAVWWLIAATFANGQSANNVMATYNLYNPQQI 48
K+ + +L AN QSA++V T+N P++I
Sbjct: 198 KMRAHLILFLFLLVLANPQSASSVPQTHNQLTPKKI 305
>AV769130
Length = 374
Score = 24.3 bits (51), Expect = 9.8
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 7 SSITQRKLSIVAVWWL 22
SS+TQRKL+ A WL
Sbjct: 266 SSVTQRKLAYAACTWL 313
>TC17026 homologue to UP|GAE2_CYATE (O65781) UDP-glucose 4-epimerase
GEPI48 (Galactowaldenase) (UDP-galactose 4-epimerase)
, partial (14%)
Length = 471
Score = 24.3 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 58 YCATWNANKPLAWRKKYGWTAFC 80
Y +T A + L W+ KYG C
Sbjct: 10 YASTEKAERELNWKAKYGIDEMC 78
>TC17723
Length = 842
Score = 24.3 bits (51), Expect = 9.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 76 WTAFCGPAGAHGRDSCGKC 94
W FC G G++S GKC
Sbjct: 436 WCKFCLKEGMMGKNSKGKC 380
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.134 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,148,234
Number of Sequences: 28460
Number of extensions: 45770
Number of successful extensions: 215
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of query: 151
length of database: 4,897,600
effective HSP length: 82
effective length of query: 69
effective length of database: 2,563,880
effective search space: 176907720
effective search space used: 176907720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0280a.5