Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0280a.5
         (151 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19307 similar to GB|CAB62537.1|6562381|HBR012583 pseudo-hevein...   116  5e-32
BP040789                                                               30  0.14
TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger prote...    27  1.5
TC8611 homologue to UP|GAE1_PEA (Q43070) UDP-glucose 4-epimerase...    27  2.0
TC10559                                                                26  2.6
TC9123 similar to UP|O48879 (O48879) Ribosomal protein L22 (Frag...    26  2.6
TC16092 similar to GB|AAH13720.1|15489231|BC013720 BC013720 prot...    25  5.8
CB828502                                                               25  5.8
BP051467                                                               25  7.5
TC14075 homologue to UP|PRP2_MEDTR (Q40375) Repetitive proline-r...    25  7.5
TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related...    25  7.5
AV769130                                                               24  9.8
TC17026 homologue to UP|GAE2_CYATE (O65781) UDP-glucose 4-epimer...    24  9.8
TC17723                                                                24  9.8

>TC19307 similar to GB|CAB62537.1|6562381|HBR012583 pseudo-hevein {Hevea
           brasiliensis;} , partial (39%)
          Length = 529

 Score =  116 bits (291), Expect(2) = 5e-32
 Identities = 50/76 (65%), Positives = 58/76 (75%)
 Frame = +1

Query: 55  AGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRDSCGKCLRVRNTATGDEATVRIVDQC 114
           +G YCATW+A K  AWR KYGWTAFCGP G  G+ SCG+CLRV N+ TG + TVRIVDQC
Sbjct: 301 SGTYCATWDAGKSWAWRSKYGWTAFCGPVGPRGQASCGRCLRVTNSRTGAQQTVRIVDQC 480

Query: 115 ANGGLDLDVNVFRRLD 130
           ANGGLD D  V+ + D
Sbjct: 481 ANGGLDWDWGVYSKSD 528



 Score = 35.8 bits (81), Expect(2) = 5e-32
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = +3

Query: 30  GQSANNVMATYNLYNPQQIGWNL 52
           G+SA+NV A+Y+ Y P+Q+GW++
Sbjct: 231 GESASNVYASYHYYRPEQVGWDV 299


>BP040789 
          Length = 547

 Score = 30.4 bits (67), Expect = 0.14
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = -2

Query: 43  YNPQQIGWNLL----TAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGRDSCGKCLRVR 98
           Y+ Q    N++    T   +   W    P++    +GW  F        RD CG   R+ 
Sbjct: 483 YSTQTSSLNIILPDDTLDVWTLKWADGMPISVEFGHGWYEFGKEKRIRARDQCGSIRRII 304

Query: 99  NTATG 103
            T TG
Sbjct: 303 QTPTG 289


>TC16693 weakly similar to PIR|T51842|T51842 RING-H2 finger protein RHA2a
           [imported] - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (35%)
          Length = 442

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 73  KYGWTAFCGPAGAHGRDSCGKCLRV 97
           K  WT+ C   G H R +  KC RV
Sbjct: 306 KIAWTSGCRNVGQHARFAGNKCCRV 380


>TC8611 homologue to UP|GAE1_PEA (Q43070) UDP-glucose 4-epimerase
           (Galactowaldenase) (UDP-galactose 4-epimerase) , partial
           (32%)
          Length = 543

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 58  YCATWNANKPLAWRKKYGWTAFC 80
           Y +T  A K L+W+ KYG    C
Sbjct: 212 YASTEKAEKELSWKAKYGVEEMC 280


>TC10559 
          Length = 456

 Score = 26.2 bits (56), Expect = 2.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 72  KKYGWTAFCGPAGAHGRDSC 91
           +K GW  FCG  G   R SC
Sbjct: 218 EKSGWHGFCGGDGGQRRRSC 277


>TC9123 similar to UP|O48879 (O48879) Ribosomal protein L22 (Fragment),
           partial (85%)
          Length = 942

 Score = 26.2 bits (56), Expect = 2.6
 Identities = 25/95 (26%), Positives = 38/95 (39%), Gaps = 11/95 (11%)
 Frame = -3

Query: 5   ISSSITQRKLSIVAV-WWLIAATFAN-----GQSA-----NNVMATYNLYNPQQIGWNLL 53
           ++S++   KL ++   WWL  A   N     G  A     +N+M+  +   P+      +
Sbjct: 541 LTSALLITKLDLLKPRWWLALAPAENTIFRMGSQAR*GMSSNIMSVSSYGRPRI*S---I 371

Query: 54  TAGAYCATWNANKPLAWRKKYGWTAFCGPAGAHGR 88
           T  A  A     +P A    Y W   C P GA  R
Sbjct: 370 TLRALSADVRICRPTA*ASTYCWLVSCPPKGARAR 266


>TC16092 similar to GB|AAH13720.1|15489231|BC013720 BC013720 protein {Mus
          musculus;} , partial (4%)
          Length = 629

 Score = 25.0 bits (53), Expect = 5.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 50 WNLLTAGAYCATWNANKPLAWRKK 73
          W L++    CA+W  ++  A RK+
Sbjct: 72 WKLVSPTTVCASWRTHRAAAGRKR 1


>CB828502 
          Length = 536

 Score = 25.0 bits (53), Expect = 5.8
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 53 LTAGAYCATWNANKPLAWRKKYGWTA 78
          LTA A   T NAN    WR K  WTA
Sbjct: 70 LTAPAEVHTKNANNCRRWR*K*RWTA 147


>BP051467 
          Length = 528

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 12/43 (27%), Positives = 20/43 (45%), Gaps = 4/43 (9%)
 Frame = +3

Query: 72  KKYGWTAFCGPAGA----HGRDSCGKCLRVRNTATGDEATVRI 110
           +KYGW   CG  G     H  +   K L++++     E T ++
Sbjct: 339 EKYGWKYGCGAKGCTKLFHASEFVHKHLKLKHPELAVEQTTKV 467


>TC14075 homologue to UP|PRP2_MEDTR (Q40375) Repetitive proline-rich cell
           wall protein 2 precursor, partial (98%)
          Length = 1524

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 11/37 (29%), Positives = 16/37 (42%)
 Frame = -1

Query: 20  WWLIAATFANGQSANNVMATYNLYNPQQIGWNLLTAG 56
           WWL+   F N    N  +  +   N + + W LL  G
Sbjct: 318 WWLLYRRFVNWGLLNWGLVHWGFLNRRFVHWRLLYWG 208



 Score = 24.6 bits (52), Expect = 7.5
 Identities = 14/55 (25%), Positives = 21/55 (37%)
 Frame = -1

Query: 20  WWLIAATFANGQSANNVMATYNLYNPQQIGWNLLTAGAYCATWNANKPLAWRKKY 74
           WWL+   F N    N     + L   + + W LL  G     +   + + WR  Y
Sbjct: 378 WWLLHRRFVNWGLLNRGFVHWWLLYRRFVNWGLLNWGLVHWGFLNRRFVHWRLLY 214


>TC10838 weakly similar to PIR|T04232|T04232 pathogenesis-related protein
           homolog F14M19.60 - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (78%)
          Length = 914

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 13  KLSIVAVWWLIAATFANGQSANNVMATYNLYNPQQI 48
           K+    + +L     AN QSA++V  T+N   P++I
Sbjct: 198 KMRAHLILFLFLLVLANPQSASSVPQTHNQLTPKKI 305


>AV769130 
          Length = 374

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +2

Query: 7   SSITQRKLSIVAVWWL 22
           SS+TQRKL+  A  WL
Sbjct: 266 SSVTQRKLAYAACTWL 313


>TC17026 homologue to UP|GAE2_CYATE (O65781) UDP-glucose 4-epimerase
          GEPI48  (Galactowaldenase) (UDP-galactose 4-epimerase)
          , partial (14%)
          Length = 471

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 58 YCATWNANKPLAWRKKYGWTAFC 80
          Y +T  A + L W+ KYG    C
Sbjct: 10 YASTEKAERELNWKAKYGIDEMC 78


>TC17723 
          Length = 842

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 76  WTAFCGPAGAHGRDSCGKC 94
           W  FC   G  G++S GKC
Sbjct: 436 WCKFCLKEGMMGKNSKGKC 380


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.134    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,148,234
Number of Sequences: 28460
Number of extensions: 45770
Number of successful extensions: 215
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of query: 151
length of database: 4,897,600
effective HSP length: 82
effective length of query: 69
effective length of database: 2,563,880
effective search space: 176907720
effective search space used: 176907720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)


Lotus: description of TM0280a.5