TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0278.5.1
         (30 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9407 weakly similar to UP|TAF5_YEAST (P38129) Transcription in...    27  0.74
BP033688                                                               26  1.7
TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Ar...    26  1.7
TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-bi...    26  2.2
AV428064                                                               25  2.8
BP066564                                                               25  3.7
TC17655 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG...    25  3.7
AV427164                                                               25  4.8
TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG...    24  6.3
TC18303 similar to GB|AAG32022.1|11141605|AF277458 LEUNIG {Arabi...    24  6.3
TC13697 similar to GB|AAG32022.1|11141605|AF277458 LEUNIG {Arabi...    24  6.3
TC19190 weakly similar to PIR|T46032|T46032 WD-40 repeat regulat...    24  8.2

>TC9407 weakly similar to UP|TAF5_YEAST (P38129) Transcription initiation
           factor TFIID subunit 5 (TBP-associated factor 5)
           (TBP-associated factor 90 kDa) (TAFII-90), partial (4%)
          Length = 530

 Score = 27.3 bits (59), Expect = 0.74
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 1   GGYIVTVSHDRTIKLWSSNMTND 23
           G Y++T S D T +LWS +   D
Sbjct: 176 GAYLITASSDTTARLWSMSTGED 244


>BP033688 
          Length = 481

 Score = 26.2 bits (56), Expect = 1.7
 Identities = 8/23 (34%), Positives = 18/23 (77%)
 Frame = -3

Query: 3   YIVTVSHDRTIKLWSSNMTNDNE 25
           YI   ++D+T+++WS N++ ++E
Sbjct: 398 YICAGNNDKTVEIWSRNLSVEHE 330


>TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Arabidopsis
           thaliana;}, partial (39%)
          Length = 527

 Score = 26.2 bits (56), Expect = 1.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 1   GGYIVTVSHDRTIKLWSSNM 20
           GG I T S DRT++LW   M
Sbjct: 181 GGAIATGSSDRTVRLWDLAM 240


>TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
           protein beta subunit-like protein, complete
          Length = 1379

 Score = 25.8 bits (55), Expect = 2.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 4   IVTVSHDRTIKLWSS 18
           IV+ S DRTIKLW++
Sbjct: 429 IVSASRDRTIKLWNT 473



 Score = 25.0 bits (53), Expect = 3.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 4   IVTVSHDRTIKLWSSNMTN 22
           IV+ S DRT+K+W  N+TN
Sbjct: 567 IVSASWDRTVKVW--NLTN 617


>AV428064 
          Length = 275

 Score = 25.4 bits (54), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 4   IVTVSHDRTIKLWSSNMTNDN 24
           + + S DRTI++W  N  N N
Sbjct: 259 LASASDDRTIRIWGLNCMNKN 197


>BP066564 
          Length = 492

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 1   GGYIVTVSHDRTIKLW 16
           G  ++T SHD T+K+W
Sbjct: 283 GERVLTASHDGTVKMW 330


>TC17655 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG
           {Arabidopsis thaliana;} , partial (9%)
          Length = 741

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 7/18 (38%), Positives = 13/18 (71%)
 Frame = +2

Query: 2   GYIVTVSHDRTIKLWSSN 19
           G + + SHD+++K+W  N
Sbjct: 269 GMVASTSHDKSVKIWK*N 322


>AV427164 
          Length = 374

 Score = 24.6 bits (52), Expect = 4.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 2   GYIVTVSHDRTIKLWSSNMTNDNEHTM 28
           G ++T S D+T+K W     +  E T+
Sbjct: 203 GQLITGSWDKTLKCWDPRGASGQERTL 283


>TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG
           {Arabidopsis thaliana;} , partial (24%)
          Length = 1048

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (72%)
 Frame = +3

Query: 2   GYIVTVSHDRTIKLW 16
           G + + SHD ++KLW
Sbjct: 780 GMVASASHDNSVKLW 824


>TC18303 similar to GB|AAG32022.1|11141605|AF277458 LEUNIG {Arabidopsis
           thaliana;} , partial (12%)
          Length = 571

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 2   GYIVTVSHDRTIKLW 16
           G + + SHD+ IKLW
Sbjct: 291 GLVASASHDKFIKLW 335


>TC13697 similar to GB|AAG32022.1|11141605|AF277458 LEUNIG {Arabidopsis
          thaliana;} , partial (4%)
          Length = 453

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 2  GYIVTVSHDRTIKLW 16
          G + + SHD+ IKLW
Sbjct: 56 GLVASASHDKFIKLW 100


>TC19190 weakly similar to PIR|T46032|T46032 WD-40 repeat regulatory
          protein tup1 homolog - Arabidopsis              
          thaliana {Arabidopsis thaliana;}, partial (18%)
          Length = 511

 Score = 23.9 bits (50), Expect = 8.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 1  GGYIVTVSHDRTIKLWSSNMTN 22
          G YIV+ S DR + LW     N
Sbjct: 15 GRYIVSGSEDRCVYLWDLQQKN 80


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.128    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,475
Number of Sequences: 28460
Number of extensions: 2650
Number of successful extensions: 34
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 30
length of database: 4,897,600
effective HSP length: 6
effective length of query: 24
effective length of database: 4,726,840
effective search space: 113444160
effective search space used: 113444160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)