TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0278.2
         (507 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding ...    29  1.6
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete          29  1.6
AU251850                                                               29  2.1
CB827141                                                               29  2.1
TC14974                                                                28  2.7
CB829198                                                               28  3.5
CN824947                                                               28  4.6
TC18955 similar to UP|Q9LU67 (Q9LU67) Phosphatidylserine decarbo...    28  4.6

>TC14091 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
           type II, complete
          Length = 1116

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 17/55 (30%), Positives = 34/55 (60%), Gaps = 3/55 (5%)
 Frame = -3

Query: 151 KRRLKQSGSESETVKVTTKKKLLVES---DEVSDFKPSRAKRRVSSDIVRVVSQS 202
           +  +K + +E+ + ++  K+ +LV S   DEVS   PS    RVS+ +V+V++++
Sbjct: 931 ENEVKHNRTENGSRRLQLKRHILVPSLSRDEVSGKSPSIVGNRVSNMVVKVLNRA 767


>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
          Length = 1064

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 20/87 (22%), Positives = 41/87 (46%), Gaps = 6/87 (6%)
 Frame = +3

Query: 116 ISSENTSVEVKTKKVDEDHVDDINDNP------EVFEHSRGKRRLKQSGSESETVKVTTK 169
           + ++++ VEVK+ +  +D  DD +D        E  +  R + +L++   E E      +
Sbjct: 474 VDADDSDVEVKSDEESDDDDDDEDDTEALLAELEQIKKERAEEKLRKERLEQEEELKVKE 653

Query: 170 KKLLVESDEVSDFKPSRAKRRVSSDIV 196
            +LL  +  +++      KRR   D+V
Sbjct: 654 AELLRGNPLLNNPASFNVKRRWDDDVV 734


>AU251850 
          Length = 343

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 28/49 (56%)
 Frame = +2

Query: 247 VKLLSWNVNGLRALLKLEGFSALELAQREDFDVLCLQETKLQEKDINEI 295
           +KLLSWN  GL +   +E      L ++E   ++ L ETKL++ +  +I
Sbjct: 38  MKLLSWNCRGLGSPRAVEALQ--RLVRKEIPQLVFLMETKLKKFETEKI 178


>CB827141 
          Length = 513

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +3

Query: 55  RLRNDPSIVDTMTVQELRKTLKSIRVPAKGRKED 88
           +L N   IV+TMT++ +  T KSI  PAK  KED
Sbjct: 120 QLTN*LCIVNTMTIEGITTT-KSIPQPAKNHKED 218


>TC14974 
          Length = 854

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 19/68 (27%), Positives = 37/68 (53%), Gaps = 6/68 (8%)
 Frame = +2

Query: 248 KLLSWNVNGLRALLKLEGFSALE---LAQREDFDVLCLQETKLQEKDINE---IKRQLID 301
           +++SWN+N L  L+KL+    +E    A+  +  +  LQE  +   D +E   ++ + I+
Sbjct: 416 EIISWNLNRLDRLVKLKDILVMEDEMSAELANSRLTRLQEVIMSCSDDDEEERLQNKSIE 595

Query: 302 GYENSFWT 309
            YE+  W+
Sbjct: 596 LYEHERWS 619


>CB829198 
          Length = 562

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
 Frame = +3

Query: 61  SIVDTMTVQELRKTLKS-IRVPAKGRKEDLLSTLKSFMDNNMG----EQHPQIEE-EHGL 114
           S ++T T   +R+ L+S   +    RK  +   +  F+         EQH   EE ++  
Sbjct: 96  SDLNTTTTATVRRQLESDFGIDLSDRKAFIREQVDLFLQTEHQPQEEEQHDDQEEPQNDD 275

Query: 115 LISSENTSVEVKTKKVDEDHVDDINDNPEVFEHSRGKRRLKQSG-SESETVKVTTKK--- 170
           +  S+++  + +T++ +++  D+ N+ P+  + ++ K+  ++S  S++E VK   KK   
Sbjct: 276 VEESQHSDSKEETEEEEDEDGDNENNKPKRAKAAKKKKNKERSNKSDNEVVK---KKGGG 446

Query: 171 --KLLVESDEVSDFK--PSRAKRRVSSDIVRVVSQSD 203
             KL   S ++ +F   P  A+  V   +   + + D
Sbjct: 447 FCKLCSLSPQLQEFTGVPEMARTEVVKQLWVYIKEKD 557


>CN824947 
          Length = 738

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 48/170 (28%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
 Frame = +1

Query: 348 TAEFDTFYLICGYIPNSGDGLKRLSYRVTQWDPSLSNYLKELEKTKPVVLTGDL---NCA 404
           TAE D   L+  YI  SG+G    S+R    +  L    K         L GDL   N +
Sbjct: 202 TAEEDE--LLTKYIQASGEG----SWRSLPKNAGLLRCGKSCRLRWINYLRGDLKRGNIS 363

Query: 405 HEE----IDIYNPAGNKKSA------GFTDEERKSFAANFLSRGFVDTFRRQHPDVVGYT 454
            EE    + ++   GN+ S       G TD E K++  + LSR  V TFR      +  T
Sbjct: 364 DEEESLIVKLHASFGNRWSLIASHMPGRTDNEIKNYWNSHLSRKLVYTFRGSTTKSIVDT 543

Query: 455 YWGYRHGGRKTNRGWRLD--YFLVSESIAD-----KVHDSYILPDVMGSD 497
               R  GR +    + +  Y L++  + +     +  D     DV GSD
Sbjct: 544 PPKRRRCGRTSRWAMKKNKTYSLINNDLQNQNNELEKEDPVARCDVKGSD 693


>TC18955 similar to UP|Q9LU67 (Q9LU67) Phosphatidylserine decarboxylase,
           partial (6%)
          Length = 523

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 23/76 (30%), Positives = 31/76 (40%)
 Frame = +2

Query: 186 RAKRRVSSDIVRVVSQSDEISTTTIPTEPWTVLAHKKPQKDWIAYNPKTMRPQPLTRDTK 245
           R +RR  +  V V   S  + T      P        P      Y+P T  P+ L+    
Sbjct: 29  RRRRRKGTGRVLVFHASKPVFTVVPKALP-------TPLPPLANYSPMTTSPESLS-SLS 184

Query: 246 FVKLLSWNVNGLRALL 261
           F +  S  +NGLRALL
Sbjct: 185 FTRRCSSRINGLRALL 232


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,891,348
Number of Sequences: 28460
Number of extensions: 99260
Number of successful extensions: 363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of query: 507
length of database: 4,897,600
effective HSP length: 94
effective length of query: 413
effective length of database: 2,222,360
effective search space: 917834680
effective search space used: 917834680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)