BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0276.7
(180 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP054137 53 4e-08
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 44 2e-05
BI418438 30 3e-04
TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-l... 38 9e-04
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 33 0.001
AV419295 37 0.003
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 37 0.003
TC18552 similar to UP|Q9FIM2 (Q9FIM2) Cell division protein FtsH... 30 0.003
BP033767 36 0.003
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 36 0.003
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 32 0.003
TC17544 similar to PIR|T04919|T04919 DNA-binding protein homolog... 30 0.004
CB827825 36 0.004
BP030058 35 0.008
BP050728 35 0.008
TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%) 29 0.008
TC19121 similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolo... 35 0.010
TC18264 similar to UP|Q9SP93 (Q9SP93) Thiol protease, partial (4%) 35 0.010
AW719349 35 0.010
TC11992 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial ... 32 0.013
>BP054137
Length = 474
Score = 52.8 bits (125), Expect = 4e-08
Identities = 36/104 (34%), Positives = 50/104 (47%), Gaps = 23/104 (22%)
Frame = -1
Query: 8 DNNDEGDGGDGC-RDGSGDTECWLGWWRR--------WC------W**W--------WWR 44
+ D GD DGC DG D W WWR+ W W**W WW+
Sbjct: 474 NGGDSGDN-DGCINDGGSDGAWW--WWRQRQQRRRR*WRMVATAQW**WR*R*RYQQWWQ 304
Query: 45 WWRVVVTALAVVVQVVAATVVVLEVMVIMVVTLAAVEEGGRGDS 88
WW VVV A +V+ VV ATV+V+ V ++ +++A R ++
Sbjct: 303 WWSVVVVATTMVL-VVVATVIVVAVAAMVTDSISASVRNDRSNT 175
Score = 39.3 bits (90), Expect = 4e-04
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 17/61 (27%)
Frame = -2
Query: 1 GGGQGSCDNNDEGDG----------GDGCRD----GSGDTECWLGWW---RRWCW**WWW 43
GGG G+ D+G G GD D GSG WW RRWCW WWW
Sbjct: 413 GGGGGNGSRGDDGSGEWWRQRNGSSGDNDDDINNGGSGG-----AWWLLRRRWCW--WWW 255
Query: 44 R 44
R
Sbjct: 254 R 252
Score = 38.1 bits (87), Expect = 9e-04
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = -3
Query: 29 WLGWWRRWCW**WWWRWWRVVVTALAVVVQVVA-----ATVVVLEVMVIMVVTLAAVEEG 83
W W RW + WW W VVV A A V + +VV+ + + + +A VE G
Sbjct: 469 W**WR*RWLYQRWWQ*WSVVVVAATAAEATTVVENGGDSAMVVVAITMTISTMVAVVERG 290
Query: 84 GRGDS---GGGG 92
G D GGGG
Sbjct: 289 GCCDDDGVGGGG 254
Score = 35.8 bits (81), Expect = 0.004
Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 5/77 (6%)
Frame = -2
Query: 97 ILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDND--GGDS 154
++++A+T VV +V V+E G GG+ S D + + GDND+D G S
Sbjct: 470 VVIVAITM---VVSTMVAVME-RGGGGGNGSRGDDGSGEWWRQRNGSSGDNDDDINNGGS 303
Query: 155 DGGW---**KQ*WWRWR 168
G W + WW WR
Sbjct: 302 GGAWWLLRRRWCWWWWR 252
Score = 33.9 bits (76), Expect = 0.017
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Frame = -2
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTECWLG-------WW---RRWCW**WWWRWWR 47
GGG GS ++ G+ SGD + + WW RRWCW W WWR
Sbjct: 407 GGGNGSRGDDGSGEWWRQRNGSSGDNDDDINNGGSGGAWWLLRRRWCW----W-WWR 252
Score = 28.5 bits (62), Expect = 0.71
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 143 NGGDN-DNDGGDSDGGW**KQ*WWRWR 168
NGGD+ DNDG +DGG WW WR
Sbjct: 474 NGGDSGDNDGCINDGGS--DGAWWWWR 400
Score = 25.4 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 12/19 (62%)
Frame = -3
Query: 5 GSCDNNDEGDGGDGCRDGS 23
G CD++ G GGDG GS
Sbjct: 289 GCCDDDGVGGGGDGDSSGS 233
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 43.9 bits (102), Expect = 2e-05
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 28 CWLGWWRRWCW**WWWRWWR 47
C + WW WCW WWW WWR
Sbjct: 309 CPIWWWCGWCWCWWWWWWWR 250
>BI418438
Length = 431
Score = 30.0 bits (66), Expect(2) = 3e-04
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 29 WLGWWRRWCW**WWWRWWRV 48
W+G WR W W WR WR+
Sbjct: 423 WIGRWRGW----WRWRRWRI 376
Score = 28.9 bits (63), Expect(2) = 3e-04
Identities = 20/70 (28%), Positives = 29/70 (40%)
Frame = -1
Query: 83 GGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGD 142
GG G+ GGGG + VVVV G G +G D+ ++ G+
Sbjct: 269 GGVGEGGGGGMV----------------VVVVVAVGGGGEG---EDEEEKREGEERGHGE 147
Query: 143 NGGDNDNDGG 152
GG + +GG
Sbjct: 146 KGGYCEGEGG 117
Score = 27.7 bits (60), Expect = 1.2
Identities = 16/46 (34%), Positives = 18/46 (38%)
Frame = -3
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTECWLGWWRRWCW**WWWRWW 46
GGG C G G G + G G+ W RW * W WW
Sbjct: 234 GGGCCGCGRRRRG*G*GGEKRGGGEGT----W*ERWIL*GRRWWWW 109
>TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-like
protein, partial (57%)
Length = 1141
Score = 38.1 bits (87), Expect = 9e-04
Identities = 12/22 (54%), Positives = 13/22 (58%), Gaps = 2/22 (9%)
Frame = +2
Query: 29 WLGWW--RRWCW**WWWRWWRV 48
W WW RW WWWRWWR+
Sbjct: 386 WRWWWILHRWRLWHWWWRWWRI 451
Score = 31.2 bits (69), Expect = 0.11
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 32 WWRRWCW**WWWRWWRVV 49
WWR W WWRWW ++
Sbjct: 365 WWRLW----HWWRWWWIL 406
Score = 27.3 bits (59), Expect = 1.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 32 WWRRWCW**WWWRW 45
WWR W WWW W
Sbjct: 467 WWRILHW--WWWLW 502
Score = 26.6 bits (57), Expect = 2.7
Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 6/24 (25%)
Frame = +2
Query: 29 WLGWWR---RWCW**W---WWRWW 46
W WWR RW W W W WW
Sbjct: 431 WWRWWRIFYRWWW--WRILHWWWW 496
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 32.7 bits (73), Expect(2) = 0.001
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 32 WWRR--WCW**WWWRWWRVVVTALAVVVQV 59
WWRR + W WW WWR +V + V V V
Sbjct: 560 WWRRCIFVWLLMWWWWWRRMVNWVWVRVSV 471
Score = 31.6 bits (70), Expect = 0.084
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 21/39 (53%)
Frame = -2
Query: 32 WWRR--------------WCW**W-------WWRWWRVV 49
WWRR W W *W WW WWRVV
Sbjct: 371 WWRRVVNWVRVGVRVLVWWGWR*WVLVRLMWWWWWWRVV 255
Score = 31.6 bits (70), Expect = 0.084
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = -2
Query: 29 WLGWWR--RWCW**WWWRWWRVV 49
W WWR W W WWR WRVV
Sbjct: 278 WWWWWRVVHWVWLLVWWR-WRVV 213
Score = 28.5 bits (62), Expect = 0.71
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 35/67 (52%)
Frame = -2
Query: 29 WLGWWRR---WCW**---------------------WWWR-----------WWRVVVTAL 53
W WWRR W W WWWR WWR VV +
Sbjct: 524 WWWWWRRMVNWVWVRVSVNWWWGRVVDWVRVRVSVNWWWRR*VLVMLLRWWWWRRVVNWV 345
Query: 54 AVVVQVV 60
V V+V+
Sbjct: 344 RVGVRVL 324
Score = 23.9 bits (50), Expect(2) = 0.001
Identities = 17/51 (33%), Positives = 22/51 (42%)
Frame = -1
Query: 64 VVVLEVMVIMVVTLAAVEEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVV 114
+VV E+ + VEE G+ GGG + V M T V VVV
Sbjct: 417 LVVEEMSTCNAS*VVVVEESGKLGEGGGEGTCVVGVEVMGTCKAYVVVVVV 265
>AV419295
Length = 383
Score = 36.6 bits (83), Expect = 0.003
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 3 GQGSCDNNDEGDGG--DGCRDGSGDTECWLGWWRRWCW**WWWRWWR 47
G G +DEGD G D S + W G + RW W *W W WW+
Sbjct: 291 GSGEMMASDEGDEGEQDAAS*SSFFSRSWSGKFCRWWWW*WKW-WWK 154
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 36.6 bits (83), Expect = 0.003
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 29 WLGWWRRWCW**WWWRWW 46
W WW +W WWW WW
Sbjct: 648 WTWWWLKWIRNKWWWTWW 595
Score = 36.2 bits (82), Expect = 0.003
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 29 WLGWWRRWCW**WWWRWW 46
W WW +W WWW WW
Sbjct: 609 WWTWWLKWIREEWWWTWW 556
Score = 34.3 bits (77), Expect = 0.013
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 27 ECWLGWWRRWCW**WWWRW 45
E W WW W * WWW W
Sbjct: 576 EWWWTWWLEWVR*EWWWTW 520
Score = 31.6 bits (70), Expect = 0.084
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = -1
Query: 32 WWRRWCW---**WWWRWW 46
WWRRW W * W++ WW
Sbjct: 771 WWRRWWWWWS*TWYYYWW 718
Score = 28.9 bits (63), Expect = 0.54
Identities = 10/22 (45%), Positives = 11/22 (49%), Gaps = 4/22 (18%)
Frame = -1
Query: 29 WLGWWR----RWCW**WWWRWW 46
W WR +W W WWW WW
Sbjct: 807 WREQWRERREKWWWRRWWW-WW 745
Score = 28.1 bits (61), Expect = 0.93
Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Frame = -1
Query: 29 WLGWWRR--WCW**WWWRWW 46
WL W R W WWW WW
Sbjct: 696 WLL*WGRLEWVRDKWWWTWW 637
Score = 23.1 bits (48), Expect(2) = 3.7
Identities = 7/16 (43%), Positives = 9/16 (55%)
Frame = -1
Query: 32 WWRRWCW**WWWRWWR 47
WW + *WW +W R
Sbjct: 465 WWLKGVRD*WWLKWVR 418
Score = 21.2 bits (43), Expect(2) = 3.7
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTECWLG 31
GGG G + + GG G +GSG + LG
Sbjct: 611 GGGLGG*NGLGKSGGGLGGWNGSGKSGGGLG 519
>TC18552 similar to UP|Q9FIM2 (Q9FIM2) Cell division protein FtsH, partial
(10%)
Length = 643
Score = 29.6 bits (65), Expect(2) = 0.003
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 41 WWWRW-WRVVVTALAVVVQVVAATVVVLEVMVI 72
WWWRW W+ ++ A + ++ +V+ + VI
Sbjct: 270 WWWRWQWQPIIQAQEIGALLLQLGIVIFVMRVI 172
Score = 25.8 bits (55), Expect(2) = 0.003
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -2
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTECWLGWWRRWCW 38
G G+ D G D R+ G GWW RW W
Sbjct: 351 GEGKVVDDAGSPSSGSDRRREKQGKG----GWWWRWQW 250
>BP033767
Length = 541
Score = 36.2 bits (82), Expect = 0.003
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Frame = -3
Query: 101 AMTTTSEVVEAVVVVLEGEGDDGGSVSD-DSDEDNDSGDSEG------------DNGGDN 147
A+ + S +V VV D+GG D D D +GD+E D GGD
Sbjct: 536 AVGSESLLVGGVVFAAASAVDEGGDRDDGDGAGDGGNGDAEELVGGFGFGGLREDEGGDV 357
Query: 148 DNDGGDSDGGW**KQ*WWRW 167
+GG+ G ++ WWRW
Sbjct: 356 GGEGGEGGGR---RRWWWRW 306
Score = 33.9 bits (76), Expect = 0.017
Identities = 15/32 (46%), Positives = 16/32 (49%), Gaps = 1/32 (3%)
Frame = -3
Query: 15 GGDGCRDGSGDTECWLGW-WRRWCW**WWWRW 45
GG GC G W+ W WR W* WWW W
Sbjct: 272 GGGGCGGGGK----WVFWVWR*GRW*WWWWVW 189
Score = 26.9 bits (58), Expect = 2.1
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = -3
Query: 2 GGQGSCDNNDEGDGGDGCRDGSGDT---ECWLGWWRRWCW**WWWRW 45
GG G + G G G R+ G E G RR WWWRW
Sbjct: 434 GGNGDAEELVGGFGFGGLREDEGGDVGGEGGEGGGRRR----WWWRW 306
Score = 25.4 bits (54), Expect = 6.0
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 2/42 (4%)
Frame = -2
Query: 30 LGWWRRWCW**--WWWRWWRVVVTALAVVVQVVAATVVVLEV 69
+G W R W WWW W + L + V+ + VV L V
Sbjct: 309 MGMWGRKVWRHFGWWWLWGWRKMGILGLEVREMVMVVVGLGV 184
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 36.2 bits (82), Expect = 0.003
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 8/27 (29%)
Frame = +3
Query: 29 WLGWWR--RWCW**WWW------RWWR 47
WL WW RW W *WWW RWWR
Sbjct: 462 WL-WWSS*RWIWW*WWWLPLWQRRWWR 539
Score = 26.6 bits (57), Expect = 2.7
Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 6/19 (31%)
Frame = +3
Query: 33 WRRWCW------**WWWRW 45
WRRW W * W WRW
Sbjct: 348 WRRWIWRRRRSS*RWIWRW 404
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 31.6 bits (70), Expect(2) = 0.003
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Frame = +1
Query: 1 GGGQGSCDNNDEGDGG--DGC-RDGSGDTECWLG---WW-RRWC---W**WWW-----RW 45
G CD DE G C R+ S + W WW RRW W WWW RW
Sbjct: 508 GAVDEGCDRGDERPGH*RP*CYRE*SPGSRPWRRRRWWWIRRWSS*RWIRWWWW*PL*RW 687
Query: 46 WR 47
WR
Sbjct: 688 WR 693
Score = 27.3 bits (59), Expect = 1.6
Identities = 10/28 (35%), Positives = 11/28 (38%), Gaps = 12/28 (42%)
Frame = +1
Query: 32 WWRRWCW**------------WWWRWWR 47
WWR W * WWW WW+
Sbjct: 685 WWRWRLWW*RRRRIRRSS*RWWWWLWWQ 768
Score = 25.8 bits (55), Expect(2) = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 48 VVVTALAVVVQVVAATVVVLEVMVIMVVTLAAVEE 82
VVV VVV+V VVV + V+ V + EE
Sbjct: 615 VVVDTAVVVVKVDTVVVVVAVIAVVAVEAMVVAEE 719
Score = 25.4 bits (54), Expect = 6.0
Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Frame = +1
Query: 32 WWRRWCW*--*WWWRW 45
W R W W* * WWRW
Sbjct: 649 WIRWWWW*PL*RWWRW 696
Score = 23.5 bits (49), Expect(2) = 0.003
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 54 AVVVQVVAATVVVLEVMVIMVVTLAAVEEGG 84
AVVV+VV +V + + + TL AVE GG
Sbjct: 729 AVVVKVVVVVMVAVAKAAVDLATL-AVEAGG 818
Score = 20.4 bits (41), Expect(2) = 1.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 83 GGRGDSGGGG 92
GGR + GGGG
Sbjct: 728 GGRREGGGGG 757
>TC17544 similar to PIR|T04919|T04919 DNA-binding protein homolog T9A21.10 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(14%)
Length = 578
Score = 30.0 bits (66), Expect(2) = 0.004
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +1
Query: 86 GDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGG 145
G GGGG +A TT + + A G +D G +DN+ EG+N G
Sbjct: 319 GGGGGGGE-----TLATTTLNSSISASSSSDAGAEEDSGK----KKKDNNQVKEEGNNSG 471
Query: 146 DNDNDGGD 153
+ D G+
Sbjct: 472 NKDKKKGE 495
Score = 25.0 bits (53), Expect(2) = 0.004
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 34 RRWCW**WWWRWW 46
RR C WWW WW
Sbjct: 306 RRCCR--WWWWWW 338
>CB827825
Length = 398
Score = 35.8 bits (81), Expect = 0.004
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = +3
Query: 32 WWRRWCW**WWW----RWWRVVVT 51
WW RW W WWW +WW+ VT
Sbjct: 111 WWSRWLW--WWWFQRRKWWQRSVT 176
Score = 26.9 bits (58), Expect = 2.1
Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Frame = +3
Query: 29 WLGWWRRWCW**WW-WRWW 46
W W R W W W W WW
Sbjct: 84 WCFWQRLWVWWSRWLWWWW 140
Score = 25.8 bits (55), Expect = 4.6
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = +3
Query: 32 WWRRWCW**WWWRWW 46
W RRWC+ W WW
Sbjct: 72 WDRRWCFWQRLWVWW 116
>BP030058
Length = 455
Score = 35.0 bits (79), Expect = 0.008
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Frame = +3
Query: 29 WLGWWRRWCW**W-----WWRWW 46
W WW RW W W WW WW
Sbjct: 315 WWRWWGRWRWWRWRWAWQWWWWW 383
Score = 28.9 bits (63), Expect = 0.54
Identities = 14/43 (32%), Positives = 17/43 (38%)
Frame = +1
Query: 114 VVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDG 156
++L G GD G G+ G GGD GGD G
Sbjct: 238 MILGGGGDKGLQFCGQEGYFGGGGEGGGGGGGDGGGGGGDGHG 366
Score = 28.5 bits (62), Expect = 0.71
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 7/26 (26%)
Frame = +3
Query: 29 WLG---WWR---RWCW**WWWR-WWR 47
W G WWR W W WW R WWR
Sbjct: 324 WWGRWRWWRWRWAWQWWWWW*RGWWR 401
Score = 27.7 bits (60), Expect = 1.2
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 118 GEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 157
GEG GG D GD G GG GG+ DGG
Sbjct: 307 GEGGGGGG----GDGGGGGGDGHGSGGG-----GGEGDGG 399
Score = 26.9 bits (58), Expect = 2.1
Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Frame = +3
Query: 34 RRWCW**WW--WRWWR 47
RR W WW WRWWR
Sbjct: 303 RR*RWWRWWGRWRWWR 350
Score = 25.8 bits (55), Expect = 4.6
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +1
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSG 24
GGG+G +G GG G GSG
Sbjct: 301 GGGEGGGGGGGDGGGGGGDGHGSG 372
>BP050728
Length = 511
Score = 35.0 bits (79), Expect = 0.008
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 33 WRRWCW**WWWRWW 46
W+ W W* WWW+WW
Sbjct: 31 WQ*W*W*WWWWQWW 72
>TC19964 similar to UP|Q40363 (Q40363) NuM1 protein, partial (11%)
Length = 562
Score = 29.3 bits (64), Expect(2) = 0.008
Identities = 11/29 (37%), Positives = 11/29 (37%), Gaps = 11/29 (37%)
Frame = +1
Query: 29 WLGWWRRWC----W**WW-------WRWW 46
W WWR W W WW W WW
Sbjct: 160 WKKWWRTWRPI*QWTWWWQRPVW*RWPWW 246
Score = 25.0 bits (53), Expect = 7.8
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 9/24 (37%)
Frame = +1
Query: 32 WWR-RWCW**WW--------WRWW 46
+WR +W W WW W WW
Sbjct: 139 FWR*KWRWKKWWRTWRPI*QWTWW 210
Score = 24.6 bits (52), Expect(2) = 0.008
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 81 EEGGRGDSGGGG 92
+ GGRG SGGGG
Sbjct: 248 DRGGRGGSGGGG 283
>TC19121 similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolog (NPC
derived proline-rich protein 1) (NDPP-1), partial (3%)
Length = 414
Score = 34.7 bits (78), Expect = 0.010
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Frame = -1
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSG---DTEC-----WLGWWRRWCW**WWWRWW 46
GGG G+ + + G DG DGSG C W WW W WW WW
Sbjct: 201 GGGSGAWEFSWASWGWDG--DGSGWWGGFRCRVAFWWSVWWSGWVGFLWWIWWW 46
Score = 26.2 bits (56), Expect = 3.5
Identities = 14/44 (31%), Positives = 19/44 (42%), Gaps = 6/44 (13%)
Frame = -1
Query: 1 GGGQGSCDNNDEGDGGDGCRDGSGDTECWLGW------WRRWCW 38
GGG G ++E GG+ +G + W WR WCW
Sbjct: 333 GGGAGGAFGSNEDCGGEAVELQAG----YN*WREAREAWRGWCW 214
>TC18264 similar to UP|Q9SP93 (Q9SP93) Thiol protease, partial (4%)
Length = 570
Score = 34.7 bits (78), Expect = 0.010
Identities = 11/16 (68%), Positives = 12/16 (74%), Gaps = 1/16 (6%)
Frame = +1
Query: 33 WRRWCW**WWW-RWWR 47
WRRW W WWW RWW+
Sbjct: 472 WRRWWW--WWWRRWWK 513
Score = 29.3 bits (64), Expect = 0.42
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 34 RRWCW**WWWRWWR 47
RR W WWW WWR
Sbjct: 460 RRVRWRRWWWWWWR 501
>AW719349
Length = 143
Score = 34.7 bits (78), Expect = 0.010
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Frame = +2
Query: 27 ECWLGWW-RRWCW**W-----WWRWWRV 48
E WL WW RR W W WW WWR+
Sbjct: 2 EWWLWWWLRRLWWRLWKYDEEWWLWWRL 85
Score = 29.6 bits (65), Expect = 0.32
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Frame = +2
Query: 25 DTECWLGWWRRW--CW**W-----WWRWWR 47
D E WL WWR W W W WW W R
Sbjct: 56 DEEWWL-WWRLWRRVWWLWKYGGKWWLWGR 142
>TC11992 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial (4%)
Length = 560
Score = 32.0 bits (71), Expect(2) = 0.013
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Frame = -2
Query: 29 WLGWWRRWCW**W---WWRW 45
W WWR W W** WW+W
Sbjct: 304 WWRWWRWWWW**K*E*WWKW 245
Score = 26.9 bits (58), Expect(2) = 0.058
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 34 RRWCW**WWWRWWR 47
R W W WWRWWR
Sbjct: 322 R*WGW--AWWRWWR 287
Score = 25.8 bits (55), Expect = 4.6
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 6/21 (28%)
Frame = -2
Query: 33 WRRWCW**WWWR------WWR 47
W W W WWW WW+
Sbjct: 310 WAWWRWWRWWWW**K*E*WWK 248
Score = 23.9 bits (50), Expect(2) = 0.058
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 56 VVQVVAATVVVLEVMVIMVVTLAAV 80
VV+VVA VVV++V V++ V + +
Sbjct: 305 VVEVVAVVVVVMKVRVMVEVEIPMI 231
Score = 21.2 bits (43), Expect(2) = 0.013
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 13 GDGGDGCRDGSG 24
GDGGDG G G
Sbjct: 330 GDGGDGVGRGGG 295
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.328 0.147 0.543
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,622,551
Number of Sequences: 28460
Number of extensions: 67556
Number of successful extensions: 3405
Number of sequences better than 10.0: 433
Number of HSP's better than 10.0 without gapping: 2068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2807
length of query: 180
length of database: 4,897,600
effective HSP length: 84
effective length of query: 96
effective length of database: 2,506,960
effective search space: 240668160
effective search space used: 240668160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0276.7