TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269b.11
         (146 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP459535 cytochrome f [Lotus japonicus]                               263  1e-71
TC14158 homologue to gb|M75722.1|ALSCP23SA Alnus incana chloropl...    32  0.057
TC18842 similar to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (31%)              28  0.48
AV772859                                                               27  1.8
TC8138 weakly similar to UP|Q84630 (Q84630) A316R protein, parti...    26  3.1
AV775388                                                               25  4.1
TC18271 similar to UP|O23442 (O23442) Dynein light chain like pr...    24  9.1

>NP459535 cytochrome f [Lotus japonicus]
          Length = 963

 Score =  263 bits (671), Expect = 1e-71
 Identities = 128/134 (95%), Positives = 131/134 (97%)
 Frame = +1

Query: 13  RILANGKRGALNVGAVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPV 72
           ++LANGKRGALNVGAVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPV
Sbjct: 280 QVLANGKRGALNVGAVLILPEGFELAPTDRISPEIKEKMGNLSFQSYRPTKKNILVVGPV 459

Query: 73  PGQKYSEITFPILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATKSGI 132
           PGQKYSEITFPILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNAT SGI
Sbjct: 460 PGQKYSEITFPILSPDPATNRDVNFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATTSGI 639

Query: 133 INKIIRKDKGGIHL 146
           INKIIRKDKGG  +
Sbjct: 640 INKIIRKDKGGYEI 681


>TC14158 homologue to gb|M75722.1|ALSCP23SA Alnus incana chloroplast 23S
           ribosomal RNA (23S rRNA) gene, partial (87%)
          Length = 2528

 Score = 31.6 bits (70), Expect = 0.057
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -3

Query: 1   AVVRKVDLFGNLRILA 16
           AVVRKVDLFGNLRI A
Sbjct: 207 AVVRKVDLFGNLRIYA 160


>TC18842 similar to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (31%)
          Length = 711

 Score = 28.5 bits (62), Expect = 0.48
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 77  YSEITFPI-LSPDPATNRDVNFLKYPIYV 104
           Y+  T+P  LSP+P+    +NFLK P+Y+
Sbjct: 226 YAHSTYPCSLSPEPSIFAVLNFLKRPLYL 140


>AV772859 
          Length = 329

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 106 GNRGRGQIYPDGSKSNNNVYNA 127
           G+R  G+IYP  SKS +  YN+
Sbjct: 38  GSRATGKIYPHKSKSQSG*YNS 103


>TC8138 weakly similar to UP|Q84630 (Q84630) A316R protein, partial (36%)
          Length = 928

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 60  RPTKKNILVVGPVPGQKYSEITFPILSPDPATNRDVNFLKYPIY 103
           +P  K I V  P+P  K      P+L P P        +  PIY
Sbjct: 375 KPIPKPIFVKKPIPFYKPVPKVIPVLKPIPIYKPVPKVIPVPIY 506



 Score = 25.4 bits (54), Expect = 4.1
 Identities = 13/31 (41%), Positives = 16/31 (50%)
 Frame = +3

Query: 59  YRPTKKNILVVGPVPGQKYSEITFPILSPDP 89
           Y+P  K I VV P+P  K      PI+ P P
Sbjct: 504 YKPVPKFIPVVKPIPILKPVPKVIPIVKPIP 596


>AV775388 
          Length = 133

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 113 IYPDGSKSNNNVYNATKSGIIN 134
           I P G + NNN Y   KSG+ N
Sbjct: 30  IQPQGRQYNNNNYQFNKSGLPN 95


>TC18271 similar to UP|O23442 (O23442) Dynein light chain like protein,
           partial (80%)
          Length = 764

 Score = 24.3 bits (51), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (49%)
 Frame = +1

Query: 62  TKKNILVVGPVPGQKYSEITFPILSPDPATNRDV 95
           +KKNIL   P      S+   P LSP PA  + +
Sbjct: 214 SKKNILGAPPPARHNNSDDIKPPLSPPPAPTKKI 315


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.141    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,035,898
Number of Sequences: 28460
Number of extensions: 24965
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of query: 146
length of database: 4,897,600
effective HSP length: 82
effective length of query: 64
effective length of database: 2,563,880
effective search space: 164088320
effective search space used: 164088320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)