TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269b.10
         (382 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Ni...   802  0.0
AV773064                                                               29  1.1
TC16648 similar to PIR|T10625|T10625 reticuline oxidase homolog ...    29  1.1
TC8449 homologue to UP|Q8LD11 (Q8LD11) 26S proteasome non-ATPase...    29  1.1
TC19712 weakly similar to UP|Q9SA38 (Q9SA38) F3O9.19 protein (At...    28  2.5
TC13709                                                                28  3.3
AV418043                                                               28  3.3
TC19639 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, p...    27  4.3
CB829314                                                               27  5.7
AV773011                                                               27  7.4
AV773159                                                               27  7.4
TC13234                                                                27  7.4
TC12896                                                                26  9.7
BP051620                                                               26  9.7
TC17879 similar to AAQ56782 (AAQ56782) At2g27460, partial (32%)        26  9.7

>TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Nicotiana
            tabacum;}, complete
          Length = 6897

 Score =  802 bits (2072), Expect = 0.0
 Identities = 382/382 (100%), Positives = 382/382 (100%)
 Frame = +1

Query: 1    KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 60
            KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS
Sbjct: 2815 KPFLLDDHDTSQKSRFLINGGTISPFLFNKIPKWMIDSFDTIKNRRKFFDNTDSYFSMIS 2994

Query: 61   HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 120
            HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT
Sbjct: 2995 HDEDNWLNPVKPFHRSSLISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFT 3174

Query: 121  YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 180
            YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK
Sbjct: 3175 YGQFLNILFIRNKRFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNLYK 3354

Query: 181  SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 240
            SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL
Sbjct: 3355 SFHFPIRSDPFVHRAIYSIADISVTPLTEGQIVNFERTYCQPLSDMNLPDSEGKNLHQYL 3534

Query: 241  KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 300
            KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT
Sbjct: 3535 KFNSNMGLIHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQT 3714

Query: 301  YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 360
            YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS
Sbjct: 3715 YIPWFLTSTGYKYLNFIFLDTFSDLLPILSSSQKFVSIFHDIMHRSDISWRILQKKWCLS 3894

Query: 361  QWNLISEISSKCFHNLLLSEEI 382
            QWNLISEISSKCFHNLLLSEEI
Sbjct: 3895 QWNLISEISSKCFHNLLLSEEI 3960


>AV773064 
          Length = 452

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 12/28 (42%), Positives = 14/28 (49%)
 Frame = -3

Query: 90  FLNNRYHFCFYCNKRLPFYVEKACINNY 117
           F   ++ FCF CN    FYV   C N Y
Sbjct: 90  FYLRKWDFCFQCN*TRLFYVIPTCCNGY 7


>TC16648 similar to PIR|T10625|T10625 reticuline oxidase homolog F21C20.180
           - Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (19%)
          Length = 483

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 328 ILSSSQKFVSIFHDIMHRSDISWRILQKKWCLSQWNLI 365
           +L  S +++   H I+H  +IS  +  ++WC  +WNLI
Sbjct: 155 VLC*SWRWIMPVHRILHFEEISSTV--REWCCIRWNLI 48


>TC8449 homologue to UP|Q8LD11 (Q8LD11) 26S proteasome non-ATPase
           regulatory subunit, partial (35%)
          Length = 682

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 92  NNRYHFCFYCNKRLPFYVEK 111
           N+ +HF FY NKR+ F++ K
Sbjct: 680 NHEFHFSFYTNKRIVFHILK 621


>TC19712 weakly similar to UP|Q9SA38 (Q9SA38) F3O9.19 protein
           (At1g16390/F3O9_19), partial (35%)
          Length = 655

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
 Frame = +2

Query: 128 LFIRNK-RFSLCGGKKKHAFLERDTISPIESRVFNILILNDFPQSGDEGYNL 178
           LF++   R+ L  GKK+ A      I+ I     N+ I + FPQ  +E  N+
Sbjct: 347 LFVQESPRWLLVRGKKEEALASLKIITSITQSNLNLAINSIFPQQEEENLNV 502


>TC13709 
          Length = 321

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +1

Query: 306 LTSTGYKYLNFIFLDTFSDL----LPILSSSQKFVSIFHDIMH----RSDISWRILQKKW 357
           L S+ Y   +F+F  TFSDL       +SSS +  +   ++ H    R+ + ++     W
Sbjct: 13  LISSHYGLQSFLFPSTFSDLKHPCCHYISSSCRTQNYSEELKHPG*ERA*VVFQF*W--W 186

Query: 358 CLSQWNLISEISS 370
           C+  W+  S ISS
Sbjct: 187 CVCSWHWASRISS 225


>AV418043 
          Length = 340

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 16/61 (26%), Positives = 30/61 (48%), Gaps = 2/61 (3%)
 Frame = +1

Query: 43  KNRRKFFDNTDSYFSMISHDEDNWLNPVKPFHRSSLISSFYKA--NRLRFLNNRYHFCFY 100
           K  RKF ++ D ++S+  HDED+   P+ P  +   + S  ++   + R     +   F+
Sbjct: 25  KLARKFRNSKDDHYSLPVHDEDS--RPLDPQEQEEFVRSLERSQIQQSRVWRRVFAALFF 198

Query: 101 C 101
           C
Sbjct: 199 C 201


>TC19639 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, partial
           (33%)
          Length = 577

 Score = 27.3 bits (59), Expect = 4.3
 Identities = 16/58 (27%), Positives = 24/58 (40%)
 Frame = +2

Query: 249 IHIPCSEKYLPSENRKKGIPCLKKCLEKGQMYRTFQRDSVFSTLSKWNLFQTYIPWFL 306
           IH   +E     E  KKG   L+KC +       F  +     +S  NL    +P++L
Sbjct: 188 IHATATESGADQELVKKGYETLQKCEDMVNKLGLFSANETKEDISTGNLKYILVPFYL 361


>CB829314 
          Length = 567

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
 Frame = +3

Query: 317 IFLDTFSDLLPILS--SSQKFVSIFHDIMHR--------------SDISWRILQKKWCLS 360
           +F     D+  ++S  +SQ   +I HDI+ R                + W   + + CL+
Sbjct: 171 LFTGNILDMASLVSKTTSQDMKTISHDIVGRLLPHFLVWSSQFGKRFLYWNGTEPRLCLT 350

Query: 361 QWNLISEISSKC 372
           + +LI E  SKC
Sbjct: 351 ETDLIKEFLSKC 386


>AV773011 
          Length = 347

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 282 TFQRDSVFSTLSKWNLFQTYI--PWFLTSTGYKY 313
           TFQ   +FS LSKWN+ Q+     W   S G+++
Sbjct: 239 TFQVRGLFSKLSKWNMRQSAQR*EWDRISDGWRH 340


>AV773159 
          Length = 188

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 162 ILILNDFPQSGDEGYNLYKSFHFP 185
           I I+N +P +G   Y+LYK+F+FP
Sbjct: 93  INIINTYPWAGY--YDLYKNFYFP 158


>TC13234 
          Length = 609

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
 Frame = +3

Query: 79  ISSFYKANRLRFLNNRYHFCFYCNKRLPFYVEKACINNYDFTYGQFLNILFI-RNKRF 135
           +  +Y    LR   N + +     K + F++++  +NNY  T G+F    +I RN RF
Sbjct: 189 VDGYYTVGELR--GNDWQYPSSVPKCILFHLKECYLNNYRGTKGEFKFARYIMRNGRF 356


>TC12896 
          Length = 530

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 105 LPFYVEKACINNYDFTYGQFLN 126
           L F VE  C+N+  F+YG FL+
Sbjct: 308 LEFRVETCCLNSPLFSYGTFLS 373


>BP051620 
          Length = 545

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 60  SHDEDNWLNPVKPFH 74
           SH    W+NP+KP H
Sbjct: 311 SHSSRTWVNPIKPAH 355


>TC17879 similar to AAQ56782 (AAQ56782) At2g27460, partial (32%)
          Length = 953

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +2

Query: 145 AFLERDTISPIESRVFNILILNDFPQSGDEG----YNLYKSFHFPIRSDPFVHRAIYSIA 200
           AF +   + P+   +F  L+ N   +  +EG    Y +Y    F +     +HRA+Y + 
Sbjct: 173 AFSQCPQLQPLPRLIF-ALLRNPLLRFHEEGVHPDYRIYLQCLFSVLEPSSLHRAVYPVL 349

Query: 201 DISVTP 206
               TP
Sbjct: 350 TSYATP 367


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,377,844
Number of Sequences: 28460
Number of extensions: 138530
Number of successful extensions: 912
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of query: 382
length of database: 4,897,600
effective HSP length: 92
effective length of query: 290
effective length of database: 2,279,280
effective search space: 660991200
effective search space used: 660991200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)