TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269a.4
         (70 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11140 weakly similar to UP|Q9HD42 (Q9HD42) Charged multivesicu...    92  1e-20
BP028664                                                               27  0.96
BP062232                                                               25  3.7
TC20078                                                                25  3.7
AV407864                                                               24  4.8
AV779085                                                               23  8.2
TC19304 similar to UP|O22523 (O22523) DNA-binding protein GBP16,...    23  8.2
TC7857 similar to UP|Q89L62 (Q89L62) Blr4686 protein, partial (7%)     23  8.2

>TC11140 weakly similar to UP|Q9HD42 (Q9HD42) Charged multivesicular body
           protein 1/chromatin modifying protein 1 (Procollagen
           (Type III) N-endopeptidase), partial (33%)
          Length = 392

 Score = 92.4 bits (228), Expect = 1e-20
 Identities = 47/69 (68%), Positives = 51/69 (73%)
 Frame = +1

Query: 1   MNRIMELEFTSKPLQEKPRKCEKQEKLEKLKVKSTTEKGNMGNIHIYDENTIRKHTEQMN 60
           MN+IMEL+FTSK LQ + RKCEK+EK EKLKVK   EKGNM    IY EN IRK TEQMN
Sbjct: 109 MNQIMELKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIRKRTEQMN 288

Query: 61  YLHPSLYLD 69
           YL  S  LD
Sbjct: 289 YLRLSSRLD 315


>BP028664 
          Length = 521

 Score = 26.6 bits (57), Expect = 0.96
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -3

Query: 11  SKPLQEKPRKCEKQEKLEKLKVKSTTEKGNMGNIHIYDENTIRKHTEQM 59
           SKPLQ   +K E+ +       + +  + ++ N+H+    T+  H+  +
Sbjct: 516 SKPLQHYSQKAEQPQTYPLYVSRQSVRQQSLNNMHVAGSCTVLLHSSNL 370


>BP062232 
          Length = 373

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 56  TEQMNYLHPSLYL 68
           +E+ +YLHPSLYL
Sbjct: 255 SEENSYLHPSLYL 293


>TC20078 
          Length = 473

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 5   MELEFTSKPLQEKPRKCEKQEKL 27
           ++L+ T KPL   P KCE + ++
Sbjct: 121 IKLKRTHKPLDSNPNKCELRHEI 53


>AV407864 
          Length = 414

 Score = 24.3 bits (51), Expect = 4.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = -1

Query: 12  KPLQEKPRKCEKQEK------LEKLKVKSTTEKGNMGNIH 45
           KP QE+P  CE+ +K       E+++V+ + ++ N    H
Sbjct: 249 KPSQEQPDFCEETKKSKPS*ERERVRVR*SKKESNFNGYH 130


>AV779085 
          Length = 508

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 35  TTEKGNMGNIHIYDENTI 52
           TTEKG   ++HI   +TI
Sbjct: 272 TTEKGGQSSLHILKHSTI 219


>TC19304 similar to UP|O22523 (O22523) DNA-binding protein GBP16, partial
           (20%)
          Length = 550

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 9   FTSKPLQEKPRKCEKQEKLEK 29
           FTSK +Q+   KC K E+ +K
Sbjct: 369 FTSKQIQQLGEKCTKIERDQK 307


>TC7857 similar to UP|Q89L62 (Q89L62) Blr4686 protein, partial (7%)
          Length = 1734

 Score = 23.5 bits (49), Expect = 8.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 49  ENTIRKHTEQMNYLHPSLYL 68
           + TI  H  Q NY HP + L
Sbjct: 884 QQTIDSHVNQQNYQHPLVNL 825


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,051,209
Number of Sequences: 28460
Number of extensions: 9414
Number of successful extensions: 52
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of query: 70
length of database: 4,897,600
effective HSP length: 46
effective length of query: 24
effective length of database: 3,588,440
effective search space: 86122560
effective search space used: 86122560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)