BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0266.9
(111 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16256 similar to UP|Q7Y0H8 (Q7Y0H8) Cinnamoyl CoA reductase, p... 26 0.85
TC13326 25 1.4
BI419430 25 1.9
TC20065 similar to UP|AAR20725 (AAR20725) At5g18690, partial (21%) 24 3.2
TC9595 similar to UP|Q946U9 (Q946U9) 5-enolpyruvylshikimate-3-ph... 24 3.2
AV411600 23 5.5
TC14934 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-lik... 23 5.5
TC8535 weakly similar to UP|Q9FJF3 (Q9FJF3) Serine protease-like... 23 5.5
TC13494 weakly similar to UP|Q84RC4 (Q84RC4) Metallothionein-lik... 23 7.2
TC16842 23 7.2
BP074097 23 7.2
TC17360 similar to UP|AAR92257 (AAR92257) At5g19340, partial (34%) 23 7.2
TC9283 23 7.2
BP062602 23 9.4
BP069025 23 9.4
TC18331 23 9.4
TC10383 23 9.4
TC8070 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (73%) 23 9.4
BP055256 23 9.4
>TC16256 similar to UP|Q7Y0H8 (Q7Y0H8) Cinnamoyl CoA reductase, partial
(32%)
Length = 475
Score = 26.2 bits (56), Expect = 0.85
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 57 SANGLGLKAAMSSDYCQTTINFPSDTIPKWKDPKTG 92
S+N +A +S C+T + DT WK+P+ G
Sbjct: 184 SSNFSWREATLSEAPCETQMILRMDT*KSWKEPRRG 291
>TC13326
Length = 578
Score = 25.4 bits (54), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 37 LTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSDYC 72
+ E+ +LSLHNT ++ V GL A + YC
Sbjct: 74 VAQENEAVVLSLHNTLEQ-VKERNRGLVAEDAESYC 178
>BI419430
Length = 586
Score = 25.0 bits (53), Expect = 1.9
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 16 FAAISIYIIGLSDPSVYPTYHLTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSD 70
FA I ++ + H +EDT AL H++ + + LGL+ S D
Sbjct: 99 FAMTGILLLSMRSLGQKYRIHGLEEDTHALREEHDSLNERMKNIKLGLRREASQD 263
>TC20065 similar to UP|AAR20725 (AAR20725) At5g18690, partial (21%)
Length = 592
Score = 24.3 bits (51), Expect = 3.2
Identities = 10/24 (41%), Positives = 12/24 (49%)
Frame = +1
Query: 32 YPTYHLTDEDTQALLSLHNTFQKC 55
+P HL Q LL LH+ KC
Sbjct: 166 FPLSHLHQHHYQILLHLHSLLSKC 237
>TC9595 similar to UP|Q946U9 (Q946U9) 5-enolpyruvylshikimate-3-phosphate
synthase B (3-phosphoshikimate
1-carboxyvinyltransferase) (EPSP synthase) (EPSPS) ,
partial (48%)
Length = 1099
Score = 24.3 bits (51), Expect = 3.2
Identities = 10/28 (35%), Positives = 14/28 (49%)
Frame = -3
Query: 26 LSDPSVYPTYHLTDEDTQALLSLHNTFQ 53
L +P YP YH + Q+ S +FQ
Sbjct: 1085 LHEPRTYPNYHCVPQ*LQSAPSTSRSFQ 1002
>AV411600
Length = 403
Score = 23.5 bits (49), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 39 DEDTQALLSLHNTFQKCVSANGLGLK 64
DE+ + +L LH + KC+ LGLK
Sbjct: 219 DEN*KPMLILHCCYLKCLQIPFLGLK 142
>TC14934 similar to UP|Q9LSN8 (Q9LSN8) Protein phosphatase 2C-like protein,
partial (57%)
Length = 932
Score = 23.5 bits (49), Expect = 5.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +3
Query: 81 DTIPKWKDPKTGELEALSFDFNLCEAVATW 110
D + W D L S+ F+LC +W
Sbjct: 12 DVLSGWSDFSADPLRGKSWRFSLCAGKESW 101
>TC8535 weakly similar to UP|Q9FJF3 (Q9FJF3) Serine protease-like protein,
partial (10%)
Length = 780
Score = 23.5 bits (49), Expect = 5.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 28 DPSVYPTYHLTDEDTQALLSLHNTFQKCVSANGLGLKAAMSSDYCQTTINFPSDTIP 84
DP + Y L+ D L Q+ +SA S + T +N+PS T+P
Sbjct: 50 DPGL--VYDLSIVDYLNFLCASGYDQQLISALNFNKTFTCSGSHSITDLNYPSITLP 214
>TC13494 weakly similar to UP|Q84RC4 (Q84RC4) Metallothionein-like protein,
complete
Length = 362
Score = 23.1 bits (48), Expect = 7.2
Identities = 13/44 (29%), Positives = 20/44 (44%), Gaps = 1/44 (2%)
Frame = -2
Query: 67 MSSDYCQTTINFPSDTIPKWKDPKTGELE-ALSFDFNLCEAVAT 109
+ S YCQT N+ +P W + +++ A F C A T
Sbjct: 316 LDSFYCQTHGNYTFAYVP*WPQVQFTQVQLAPHLQFPSCSAAET 185
>TC16842
Length = 563
Score = 23.1 bits (48), Expect = 7.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 46 LSLHNTFQKCVSANGLGLKAAMSSDYCQTTINFPS 80
LSL + S N A+ SS C TT FP+
Sbjct: 373 LSLKTRGE*YTSPNSSSSTASSSSRLCSTTCGFPT 269
>BP074097
Length = 388
Score = 23.1 bits (48), Expect = 7.2
Identities = 10/23 (43%), Positives = 12/23 (51%)
Frame = -1
Query: 82 TIPKWKDPKTGELEALSFDFNLC 104
TI KW DP + SFD + C
Sbjct: 178 TITKWLDPSPVPAHSRSFDASGC 110
>TC17360 similar to UP|AAR92257 (AAR92257) At5g19340, partial (34%)
Length = 574
Score = 23.1 bits (48), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = -2
Query: 41 DTQALLSLHNTFQKCVSANGLG 62
D + +L+N+FQ+ V GLG
Sbjct: 102 DERCFFNLNNSFQRTVHFGGLG 37
>TC9283
Length = 1307
Score = 23.1 bits (48), Expect = 7.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 67 MSSDYCQTTINFPSDTIPKWKDPK 90
MSS +CQ + + +P++ D K
Sbjct: 827 MSSTHCQVIFSMADEYVPEYVDKK 898
>BP062602
Length = 536
Score = 22.7 bits (47), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -1
Query: 26 LSDPSVYPTYHLTDEDTQALLSLH 49
LS + YHLT+ T ++SLH
Sbjct: 242 LSSLIICRVYHLTETHTAQVVSLH 171
>BP069025
Length = 392
Score = 22.7 bits (47), Expect = 9.4
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +3
Query: 10 LALASGFAAISIYIIGLSDPSVYPTYHLTDEDTQAL 45
L +A A ++ + + P++YP H+T +Q +
Sbjct: 3 LRIAILIARSQLFNVPVCHPNIYPKQHVTINKSQVM 110
>TC18331
Length = 498
Score = 22.7 bits (47), Expect = 9.4
Identities = 10/29 (34%), Positives = 18/29 (61%)
Frame = +2
Query: 39 DEDTQALLSLHNTFQKCVSANGLGLKAAM 67
DED+++ + + + C+ A LGLKA +
Sbjct: 62 DEDSESPMLQSSNMKHCMPAFFLGLKACI 148
>TC10383
Length = 544
Score = 22.7 bits (47), Expect = 9.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 71 YCQTTINFPSDTIPKWK 87
YC+T N S +P WK
Sbjct: 18 YCRTFDNNTSQALPTWK 68
>TC8070 similar to UP|Q9LQZ3 (Q9LQZ3) F10A5.28, partial (73%)
Length = 1758
Score = 22.7 bits (47), Expect = 9.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 24 IGLSDPSVYPTYHLTDEDTQALLSLH 49
I SDP V P +HL +L SLH
Sbjct: 1160 IAASDPQVMPKHHLL-----SLFSLH 1222
>BP055256
Length = 523
Score = 22.7 bits (47), Expect = 9.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +3
Query: 66 AMSSDYCQTTINFPSDTIPKWKDPKTGEL 94
A+ C+ I + I KW DP+ L
Sbjct: 429 ALEDSLCKRVIVTRDENITKWLDPEAAAL 515
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,129,167
Number of Sequences: 28460
Number of extensions: 27323
Number of successful extensions: 93
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of query: 111
length of database: 4,897,600
effective HSP length: 87
effective length of query: 24
effective length of database: 2,421,580
effective search space: 58117920
effective search space used: 58117920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)
Lotus: description of TM0266.9