BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0265.9
(456 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP036820 103 8e-23
TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal... 30 0.83
TC14205 similar to UP|Q8M0X4 (Q8M0X4) Cytochrome oxidase subunit... 29 1.8
TC18383 similar to UP|Q943Z4 (Q943Z4) AT3g50560/T20E23_160, part... 28 2.4
AV410435 28 4.1
TC16603 similar to UP|Q7XJ86 (Q7XJ86) Glycinamide ribonucleotide... 28 4.1
TC19622 28 4.1
TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger pr... 27 5.4
TC9182 similar to AAR24677 (AAR24677) At3g62040, partial (86%) 27 5.4
AV778692 27 7.0
TC17194 UP|CAE02590 (CAE02590) Nod-factor receptor 1b, complete 27 7.0
>BP036820
Length = 505
Score = 103 bits (256), Expect = 8e-23
Identities = 54/85 (63%), Positives = 69/85 (80%), Gaps = 1/85 (1%)
Frame = -2
Query: 373 DQLAFAFVRDNMNPKLKLNMFEVEVFEQVTMEFRHNLGLSNGSTAKKLSRTG-KTKRAEP 431
DQL FAFVRD+M PKLKLNMFEVEVFEQVT+E+RHNL S+ KK+S +G +TKRA P
Sbjct: 504 DQLPFAFVRDHMKPKLKLNMFEVEVFEQVTVEYRHNL----KSSVKKVSSSGRRTKRAVP 337
Query: 432 NLMYVNGSCCSKCQQYLSMMWGESH 456
+L++VN ++CQ+YLS +WGES+
Sbjct: 336 DLLFVN----NRCQKYLSTVWGESN 274
>TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal protein L3
{Arabidopsis thaliana;} , partial (83%)
Length = 1408
Score = 30.0 bits (66), Expect = 0.83
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +2
Query: 12 IIQSKLLCFSLFYLFTSLFLALY--TISFQSKCLFRSSPFDPIQTSLISY---PSSYGEH 66
+I SKLLC +L F S+FL L S + SS + S++S P S
Sbjct: 266 LIMSKLLCMALSISFPSIFLLLL*EIKSNKHNTSSSSSHHSSVTMSILSISSPPISSSSF 445
Query: 67 KYAVSTTRSSC 77
++S+TR C
Sbjct: 446 SLSISSTRMPC 478
>TC14205 similar to UP|Q8M0X4 (Q8M0X4) Cytochrome oxidase subunit I
(Cytochrome c oxidase polypeptide I) (Fragment) ,
partial (9%)
Length = 724
Score = 28.9 bits (63), Expect = 1.8
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = -1
Query: 38 FQSKCLFRSSPFDPIQTSLISYPSSYGEHKY 68
F SKC F S F P+Q ISY S+ HKY
Sbjct: 412 FISKCHFHCSLFFPLQAQPISYLPSF--HKY 326
>TC18383 similar to UP|Q943Z4 (Q943Z4) AT3g50560/T20E23_160, partial (17%)
Length = 420
Score = 28.5 bits (62), Expect = 2.4
Identities = 20/59 (33%), Positives = 27/59 (44%)
Frame = +2
Query: 250 LFPNSQFSIWIDAKLKLMVDPLLLIHSLVISENADMAISKHPFYVHTMEEAMATARWKK 308
L P+ QFS I + PLLL SLV ++N S F H E + T + K+
Sbjct: 77 LLPHLQFS-QISSPPSTFTTPLLLPKSLVTNQNIPP*FSSIVFLTHYQRETLYTTQEKR 250
>AV410435
Length = 362
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/46 (36%), Positives = 27/46 (57%), Gaps = 1/46 (2%)
Frame = +2
Query: 409 LGLSNGSTAKKLSRTGKTKRAEPNLMYVNGSCCSKCQQ-YLSMMWG 453
LGL NG+ +++ S T + +A V+GS S+ +Q YL+ WG
Sbjct: 161 LGLQNGTHSRRYSFTAQAMKA------VSGSFVSQSEQGYLTDTWG 280
>TC16603 similar to UP|Q7XJ86 (Q7XJ86) Glycinamide ribonucleotide
transformylase , partial (34%)
Length = 603
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -1
Query: 271 LLLIHSLVISENADMAISKHPF-YVHTMEEAMATARWKKWW 310
++LIH + S + S + F ++HT+E A+A+ WKK W
Sbjct: 123 IVLIHKMNCST*KSSSRSNYRFMHIHTIE-ALASRSWKKRW 4
>TC19622
Length = 424
Score = 27.7 bits (60), Expect = 4.1
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 18 LCFSLFYLFTSLFLALYT 35
L +S F+L+TS+ LALYT
Sbjct: 105 LLYSFFFLYTSVLLALYT 52
>TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger protein 2
{Arabidopsis thaliana;}, partial (8%)
Length = 553
Score = 27.3 bits (59), Expect = 5.4
Identities = 24/85 (28%), Positives = 34/85 (39%), Gaps = 19/85 (22%)
Frame = +3
Query: 11 LIIQSKLLCFSLFYLFTSLFLALYTISFQS-------------------KCLFRSSPFDP 51
L I S L+C L++LF S F ++ F K L SS FDP
Sbjct: 93 LSIFSHLVCIYLWFLFLSFFFNIFRGKFNPFQFSLSLIIILTSG*VFLVKKLKGSSGFDP 272
Query: 52 IQTSLISYPSSYGEHKYAVSTTRSS 76
TS+ + P ++ A+ R S
Sbjct: 273 --TSIKNQPLTFSSSSTAIPDARKS 341
>TC9182 similar to AAR24677 (AAR24677) At3g62040, partial (86%)
Length = 1260
Score = 27.3 bits (59), Expect = 5.4
Identities = 15/44 (34%), Positives = 22/44 (49%)
Frame = -3
Query: 134 NDSTEVPCGFFKKFPISDSDRIAMEKCKNVVVVSAIFNDHDKIR 177
N + VPC +K I + +M KC N + S +F H K+R
Sbjct: 448 NPAIVVPCSIYKSRHIFGTSLSSMCKCSN--IYSCMFLRHAKLR 323
>AV778692
Length = 524
Score = 26.9 bits (58), Expect = 7.0
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = -1
Query: 74 RSSCSSPVLFSDYRDVLKEIKNFRKSSTSSTKMLGYMHGNADSFGGNLSTH 124
+S+CSSP+ S R+V +I N ++ +L GN G ++ H
Sbjct: 422 QSACSSPIHLSRVRNVQPKIYNHGRTLQPEKSILA-SSGNTSQLFGQMNLH 273
>TC17194 UP|CAE02590 (CAE02590) Nod-factor receptor 1b, complete
Length = 2193
Score = 26.9 bits (58), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 131 DHQNDSTEVPCGFFKKFPIS 150
DH N S PC ++ KFP+S
Sbjct: 1361 DHGNGSLPEPCKYWPKFPLS 1302
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,764,039
Number of Sequences: 28460
Number of extensions: 126424
Number of successful extensions: 763
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of query: 456
length of database: 4,897,600
effective HSP length: 93
effective length of query: 363
effective length of database: 2,250,820
effective search space: 817047660
effective search space used: 817047660
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0265.9