TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0265.8
         (765 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP052828                                                              119  1e-27
BP067118                                                               31  0.85
TC14226 UP|Q9MBE4 (Q9MBE4) Cytochrome P450, complete                   30  1.1
TC19588                                                                30  1.4
TC12859 weakly similar to UP|CAE55354 (CAE55354) PE-PGRS FAMILY ...    30  1.9
TC15476 similar to UP|THRC_SOLTU (Q9MT28) Threonine synthase, ch...    30  1.9
BP072681                                                               28  5.5
AW720255                                                               28  7.2
TC13678                                                                27  9.4

>BP052828 
          Length = 523

 Score =  119 bits (299), Expect = 1e-27
 Identities = 63/148 (42%), Positives = 94/148 (62%), Gaps = 3/148 (2%)
 Frame = +2

Query: 566 PVNFGASKQVRALCDLGSSVNLMPLSMFERLNVGELKPTMMMLQLADRSIVTPWGVVEDV 625
           P   G +K    + DLG+ +N+MP S++  L+ G L+ T +++QLA+RS   P GVVEDV
Sbjct: 71  PCTIGDNKYENCMLDLGAGINVMPTSIYNILHPGPLQHTGLIVQLANRSNARPKGVVEDV 250

Query: 626 LVRVGEFEFPVDFVIIDMD---EDSKIPLILGRPFLATSQAKINVGKGTISLRVADEKIG 682
           LV+V E  FP DF I+DM+   + S+ P+ILGRPF+ T++ KI+V  GT+S+   D    
Sbjct: 251 LVQVNELIFPADFYILDMEGETKSSRAPIILGRPFMKTAKTKIDVDNGTMSMEFGDIIAK 430

Query: 683 FNIFDLKPKPVEKNDVFLVKMMEEWSDE 710
           FNI D    P+E + VF + ++ E  D+
Sbjct: 431 FNIDDAMKHPLEDHSVFHIGVVSELVDD 514


>BP067118 
          Length = 554

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 452 KKKQKEKEEEKRKVELEKKFTKVPFPPFPT 481
           K K+KEK E+++K + E++   VP PP  T
Sbjct: 108 KPKRKEKSEKEKKKQEEEQEQSVPIPPIQT 197


>TC14226 UP|Q9MBE4 (Q9MBE4) Cytochrome P450, complete
          Length = 1878

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 268 WNMRWSSCQ*RLRCRF*RGSQGFEKFPK 295
           WN+RW SC+   RC F RGS    + P+
Sbjct: 393 WNLRWCSCR---RCTFQRGSVAGSQAPR 319


>TC19588 
          Length = 489

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = -1

Query: 450 ENKKKQKEKEEEKRKVELE-----KKFTKVPFPPFPTNIAKRRLEKQFSK 494
           ENK K   KE+ K     E     ++ TKV FP +PT +A+  L  + S+
Sbjct: 459 ENKSKLNCKEQAKIGQSQEGNAHSQRLTKVEFPKYPTTLARFPLPYELSR 310


>TC12859 weakly similar to UP|CAE55354 (CAE55354) PE-PGRS FAMILY PROTEIN,
           partial (5%)
          Length = 528

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/38 (47%), Positives = 21/38 (54%), Gaps = 4/38 (10%)
 Frame = +2

Query: 327 SEAIFKSKIP---VSEFRT-STESGSRQWQWEEELRRI 360
           SE  FKS IP     E RT  TES  R W+W+  +R I
Sbjct: 407 SELKFKSSIPR*ASDE*RTRETESDRRSWRWQRRVRTI 520


>TC15476 similar to UP|THRC_SOLTU (Q9MT28) Threonine synthase, chloroplast
           precursor  (TS) , partial (19%)
          Length = 658

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/67 (35%), Positives = 35/67 (51%)
 Frame = -3

Query: 524 EILSKKRRLSEENEIVELTEECSVILQRKLPPKRKDPGSFTLPVNFGASKQVRALCDLGS 583
           +I+  K +L+  N  VE   EC  I+ ++L    KD  + T+P N   SKQ   +  LG+
Sbjct: 488 KIIYNKIQLACSN--VEQHTECQ*IIPKRLKANTKD--NTTVPKN---SKQAEQIAKLGT 330

Query: 584 SVNLMPL 590
             NLM L
Sbjct: 329 LANLMIL 309


>BP072681 
          Length = 461

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 53 SIWRICH*RCTCSSRAVHQKLQYYMSSQPRACSFATFSFF 92
          SI+   H  C C+    H   +   + +P++CS  +FSFF
Sbjct: 11 SIFIFIHTWCRCAGLPHHYIYKLTTNKRPKSCSNYSFSFF 130


>AW720255 
          Length = 532

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = +2

Query: 449 GENKKKQKEKEEEKRKVELEKKFTKVP---------FPPFPTNIAKRRLEKQFSKFISMF 499
           GEN  + K K++ K K +LEK+  K            PP   +I  R +  QF     +F
Sbjct: 206 GENNSESKSKKKLKMKKKLEKETEKADKRGLCYMSRIPPHMDHIKLRHILSQFGDIQRIF 385


>TC13678 
          Length = 548

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/55 (30%), Positives = 22/55 (39%)
 Frame = -2

Query: 55  WRICH*RCTCSSRAVHQKLQYYMSSQPRACSFATFSFFTKGHN*GVAQLPTSRQH 109
           W IC    T + + +HQ L       PR+     F+F    H     Q P S QH
Sbjct: 499 WWICKATSTTNKKELHQDLSSLPGPSPRSMILYKFNFSHSSHG-LKEQSPLSVQH 338


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.337    0.147    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,058,103
Number of Sequences: 28460
Number of extensions: 167483
Number of successful extensions: 1161
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of query: 765
length of database: 4,897,600
effective HSP length: 97
effective length of query: 668
effective length of database: 2,136,980
effective search space: 1427502640
effective search space used: 1427502640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)