TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0265.5
         (404 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)        350  2e-97
TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATP...   234  3e-62
TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J...   169  1e-42
TC10267 similar to UP|Q7XXR9 (Q7XXR9) Katanin, partial (20%)          159  8e-40
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {...   146  7e-36
TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (T...   131  2e-31
BF177891                                                              127  3e-30
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase...   127  4e-30
AV408284                                                              126  7e-30
TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transpor...   117  3e-27
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat...   113  5e-26
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa...   108  2e-24
CB826675                                                              103  4e-23
AV421390                                                               80  5e-16
TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 ...    80  6e-16
CN825587                                                               74  6e-14
TC16655 homologue to UP|O99018 (O99018) Chloroplast protease pre...    70  8e-13
TC12379 homologue to UP|O04327 (O04327) Cell division protein Ft...    67  7e-12
TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPas...    60  8e-10
CN825067                                                               59  1e-09

>TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)
          Length = 532

 Score =  350 bits (898), Expect = 2e-97
 Identities = 176/176 (100%), Positives = 176/176 (100%)
 Frame = +1

Query: 147 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVK 206
           PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVK
Sbjct: 4   PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVK 183

Query: 207 VLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVL 266
           VLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVL
Sbjct: 184 VLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVL 363

Query: 267 AATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQ 322
           AATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQ
Sbjct: 364 AATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQ 531


>TC9659 homologue to UP|Q9SEA8 (Q9SEA8) Salt-induced AAA-Type ATPase,
           partial (74%)
          Length = 1060

 Score =  234 bits (596), Expect = 3e-62
 Identities = 116/211 (54%), Positives = 154/211 (72%)
 Frame = +1

Query: 99  ESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 158
           E  E   L   L+  IIR  P++KW  + GLE+AK+ L+EAV++P+K+P++FTG   PW+
Sbjct: 388 EDPEQAKLRAGLNSAIIREKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWR 567

Query: 159 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPS 218
             LL+GPPGTGK+ LAKAVATE  +TFF++S+S + SKW G+SEKLV  LFQ+AR  APS
Sbjct: 568 AFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLGSKWMGESEKLVSNLFQMARESAPS 747

Query: 219 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAA 278
            IF+DEID++  QRGE  +E EASRR+KTELL+QM G+   D+ V VLAATN P+ LD A
Sbjct: 748 IIFVDEIDSLCGQRGEG-NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQA 924

Query: 279 MLRRLEKRILVPLPEPEARVAMFEELLPPQP 309
           + RR +KRI +PLP+ +AR  MF+  L   P
Sbjct: 925 IRRRFDKRIYIPLPDVKARQHMFKVHLGDTP 1017


>TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J8.110 -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (29%)
          Length = 771

 Score =  169 bits (427), Expect = 1e-42
 Identities = 90/187 (48%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
 Frame = +3

Query: 121 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVAT 179
           V +  I  ++  K  L+E V++P++ P  F G LL P +GILLFGPPGTGKTMLA A+A 
Sbjct: 192 VTFGDIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAXAIAN 371

Query: 180 ECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEH 239
           E   +F N+S S++ SKW G+ EK V+ LF LA   AP+ IF+DE+D+++ QR     EH
Sbjct: 372 EAGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQRTRV-GEH 548

Query: 240 EASRRLKTELLIQMDG-LTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARV 298
           EA R++K E +   DG LT   E + VLAATN P++LD A++RR E+RI+V LP  E R 
Sbjct: 549 EAMRKIKNEFMTHWDGLLTAPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENRE 728

Query: 299 AMFEELL 305
            + + LL
Sbjct: 729 MILKTLL 749


>TC10267 similar to UP|Q7XXR9 (Q7XXR9) Katanin, partial (20%)
          Length = 562

 Score =  159 bits (402), Expect = 8e-40
 Identities = 78/78 (100%), Positives = 78/78 (100%)
 Frame = +1

Query: 327 SGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHL 386
           SGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHL
Sbjct: 1   SGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHL 180

Query: 387 HAHKYDKFNADYGSQILQ 404
           HAHKYDKFNADYGSQILQ
Sbjct: 181 HAHKYDKFNADYGSQILQ 234


>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
           thaliana;}, partial (87%)
          Length = 1385

 Score =  146 bits (368), Expect = 7e-36
 Identities = 91/241 (37%), Positives = 140/241 (57%), Gaps = 5/241 (2%)
 Frame = +3

Query: 119 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 177
           PD  ++ I GL+   + +KE + +PIK+P+ F  L ++  KG+LL+GPPGTGKT+LA+AV
Sbjct: 312 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 491

Query: 178 ATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARS 237
           A     TF  +S S +V K+ G+  ++V+ LF +AR HAPS IF+DEID+I S R E+ S
Sbjct: 492 AHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGS 671

Query: 238 EHEAS--RRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPE 293
               S  +R   ELL Q+DG   +++ + VL ATN    LD A+LR  R++++I  P P 
Sbjct: 672 GXGDSEVQRTMLELLNQLDGFEASNK-IKVLMATNRIDILDQALLRPGRIDRKIEFPNPN 848

Query: 294 PEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQR 353
            E+R  + +           I    +  +  G SG++++ +C E  M  LR     + Q 
Sbjct: 849 EESRQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQE 1028

Query: 354 E 354
           +
Sbjct: 1029D 1031


>TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (TAT-binding
           homolog 4), partial (20%)
          Length = 389

 Score =  131 bits (329), Expect = 2e-31
 Identities = 68/123 (55%), Positives = 85/123 (68%), Gaps = 2/123 (1%)
 Frame = +3

Query: 136 LKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 193
           LKE V++P+K P+ F    L  P KGILLFGPPGTGKTMLAKAVATE    F NIS SS+
Sbjct: 12  LKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 191

Query: 194 VSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 253
            SKW G+ EK VK +F LA   +PS IF+DE+D ++ +R E   EHEA R++  E ++  
Sbjct: 192 TSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDXMLXRR-ENPGEHEAMRKMXNEFMVHW 368

Query: 254 DGL 256
           DGL
Sbjct: 369 DGL 377


>BF177891 
          Length = 390

 Score =  127 bits (320), Expect = 3e-30
 Identities = 64/121 (52%), Positives = 86/121 (70%), Gaps = 2/121 (1%)
 Frame = +1

Query: 138 EAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 195
           E V++P++ P+ FT   LL P KGILLFGPPGTGKT++AKA+ATE    F ++S S++ S
Sbjct: 16  ELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTS 195

Query: 196 KWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 255
           KW GD+EKL K LF  A   AP  IF+DE+D+++  RG A  EHEA+RR++ E +   DG
Sbjct: 196 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA-FEHEATRRMRNEFMAAWDG 372

Query: 256 L 256
           L
Sbjct: 373 L 375


>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
           RPT2a, partial (69%)
          Length = 916

 Score =  127 bits (318), Expect = 4e-30
 Identities = 74/187 (39%), Positives = 116/187 (61%), Gaps = 4/187 (2%)
 Frame = +1

Query: 115 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTML 173
           +  +P   +  I GL+   + +KEAV +P+ +P+ +  + + P KG++L+G PGTGKT+L
Sbjct: 355 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 534

Query: 174 AKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRG 233
           AKAVA     TF  +  S ++ K+ GD  KLV+ LF++A   +PS +F+DEIDA+ ++R 
Sbjct: 535 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 714

Query: 234 EARSEHEAS-RRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLEKRILVP 290
           +A S  E   +R   ELL Q+DG     + V V+ ATN    LD A+LR  R++++I  P
Sbjct: 715 DAHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFP 891

Query: 291 LPEPEAR 297
           LP+ + R
Sbjct: 892 LPDTKTR 912


>AV408284 
          Length = 425

 Score =  126 bits (316), Expect = 7e-30
 Identities = 70/144 (48%), Positives = 95/144 (65%), Gaps = 4/144 (2%)
 Frame = +1

Query: 129 LENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 186
           LE+ K  L E V++P+K P  F+   LL P KG+LL+GPPGTGKTMLAKA+A E    F 
Sbjct: 1   LESIKEALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 180

Query: 187 NISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 246
           N+  S+++SKW GD++KLV  +F LA    P+ IF+DE+D+ + QR    ++HEA   +K
Sbjct: 181 NVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQR--RTTDHEALLNMK 354

Query: 247 TELLIQMDGLTRTDE--LVFVLAA 268
           TE +   DG T TD+   V VLAA
Sbjct: 355 TEFMALWDGFT-TDQNARVMVLAA 423


>TC9326 homologue to UP|Q93WX4 (Q93WX4) Suppressor of K+ transport growth
           defect-like protein (Fragment), partial (73%)
          Length = 894

 Score =  117 bits (293), Expect = 3e-27
 Identities = 62/126 (49%), Positives = 87/126 (68%), Gaps = 1/126 (0%)
 Frame = +2

Query: 221 FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAML 280
           F+DEID++  QRGE  +E EASRR+KTELL+QM G+   D+ V VLAATN P+ LD A+ 
Sbjct: 20  FVDEIDSLCGQRGEG-NESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIR 196

Query: 281 RRLEKRILVPLPEPEARVAMFEELLPPQPDE-ESIPYDLLVNQTEGYSGSDIRLLCKEVA 339
           RR +KRI +PLP+ +AR  MF+  L   P       ++ L ++TEG+SGSDI +  K+V 
Sbjct: 197 RRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLNESDFEYLASRTEGFSGSDISVCVKDVL 376

Query: 340 MQPLRR 345
            +P+R+
Sbjct: 377 FEPVRK 394


>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
           6B homolog, partial (65%)
          Length = 901

 Score =  113 bits (283), Expect = 5e-26
 Identities = 62/164 (37%), Positives = 102/164 (61%), Gaps = 2/164 (1%)
 Frame = +3

Query: 94  LLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 153
           +LPP   + +  L++S         PDV +  I G +  K+ ++EAV +P+ + + +  +
Sbjct: 429 VLPPEADSSISLLSQS-------EKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 587

Query: 154 -LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLA 212
            + P +G+LL+GPPGTGKTMLAKAVA      F  +  S  V K+ G+  ++V+ +F+LA
Sbjct: 588 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 767

Query: 213 RHHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDG 255
           + +AP+ IF+DE+DAI + R +A++  +   +R+  ELL QMDG
Sbjct: 768 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG 899


>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
          Length = 1418

 Score =  108 bits (270), Expect = 2e-24
 Identities = 50/115 (43%), Positives = 74/115 (63%)
 Frame = +2

Query: 119 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 178
           P+VKWE + GLE+ K+ + + V +P+ +   F   L    G+LL+GPPGTGKT+LAKAVA
Sbjct: 209 PNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVA 388

Query: 179 TECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRG 233
           TEC   F ++    +++ + G+SEK V+ +FQ AR   P  IF DE+D++    G
Sbjct: 389 TECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPASG 553


>CB826675 
          Length = 551

 Score =  103 bits (258), Expect = 4e-23
 Identities = 58/142 (40%), Positives = 87/142 (60%), Gaps = 3/142 (2%)
 Frame = +1

Query: 119 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 177
           P   +  + GLE   + L EA+V+P+ + + F  L + P KG+LL+GPPGTGKT++A+A 
Sbjct: 121 PTEDYNDVGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARAC 300

Query: 178 ATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQR--GEA 235
           A +   TF  ++   +V  + GD  KLV+  FQLA+  +P  IF+DEIDAI ++R   E 
Sbjct: 301 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV 480

Query: 236 RSEHEASRRLKTELLIQMDGLT 257
             + E  R +  ELL Q+DG +
Sbjct: 481 SGDREVQRTM-LELLNQLDGFS 543


>AV421390 
          Length = 409

 Score = 80.5 bits (197), Expect = 5e-16
 Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
 Frame = +2

Query: 108 ESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPP 166
           + L+++++       ++ +KG ++AK+ L+E VV  ++ P  FT L     KGILL G P
Sbjct: 23  KELNKEVMPEKNVKTFKDVKGCDDAKQELEE-VVEYLRNPAKFTRLGGKLPKGILLTGAP 199

Query: 167 GTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEID 226
           GTGKT+LAKA+A E    FF  + S     + G   + V+ LFQ A+  AP  IF+DEID
Sbjct: 200 GTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEID 379

Query: 227 AIISQR 232
           A+ S R
Sbjct: 380 AVGSTR 397


>TC9051 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
           proteasome subunit 7) (26S proteasome AAA-ATPase subunit
           RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
           partial (46%)
          Length = 867

 Score = 80.1 bits (196), Expect = 6e-16
 Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
 Frame = +2

Query: 188 ISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRL 245
           +  S +V K+ G+  ++V+ LFQ+AR      +F DE+DAI   R +     ++E  R +
Sbjct: 8   VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 187

Query: 246 KTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPEPEARVAMFEE 303
             E++ Q+DG       + VL ATN P  LD A+LR  RL++++   LP+ E+R  +F+ 
Sbjct: 188 -LEIVNQLDGFDARGN-IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 361

Query: 304 LLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDL 356
                  E  I ++LL       +G+DIR +C E  M  +R     + +++ L
Sbjct: 362 HTRTMNCERDIRFELLSRLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFL 520


>CN825587 
          Length = 663

 Score = 73.6 bits (179), Expect = 6e-14
 Identities = 46/146 (31%), Positives = 81/146 (54%), Gaps = 3/146 (2%)
 Frame = +2

Query: 212 ARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTRTDELVFVLAATN 270
           A+  AP  +F+DEIDA+  QRG      ++   +   +LL +MDG +     V VLAATN
Sbjct: 2   AKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSG-VIVLAATN 178

Query: 271 LPWELDAAMLR--RLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSG 328
            P  LD+A+LR  R ++++ V  P+   RV + +     +   + + +D +  +T G++G
Sbjct: 179 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTG 358

Query: 329 SDIRLLCKEVAMQPLRRLMSQLEQRE 354
           +D++ L  E A+   RR + ++ + E
Sbjct: 359 ADLQNLMNEAAILAARRDLKEISKDE 436


>TC16655 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
           partial (39%)
          Length = 934

 Score = 69.7 bits (169), Expect = 8e-13
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
 Frame = +3

Query: 105 TLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILL 162
           T  +S ++  +  +  V ++ + G++ AK+   E V   +K P+ FT  G   P KG+LL
Sbjct: 597 TFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIP-KGVLL 770

Query: 163 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHA 216
            GPPGTGKT+LAKA+A E    FF+IS S  V  + G     V+ LF+ A+ +A
Sbjct: 771 IGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA 932


>TC12379 homologue to UP|O04327 (O04327) Cell division protein FtsH isolog,
           partial (15%)
          Length = 505

 Score = 66.6 bits (161), Expect = 7e-12
 Identities = 42/147 (28%), Positives = 78/147 (52%), Gaps = 3/147 (2%)
 Frame = +1

Query: 201 SEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTRT 259
           S  L + L+Q A+ +APS +F+DE+DA+  +RG  +      R     +LL+ +DG    
Sbjct: 46  SLSLSRALYQEAKENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR 225

Query: 260 DELVFVLAATNLPWELDAAMLR--RLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYD 317
            E V  +A+TN P  LD A++R  R +++I +P P    R+ + +     +P    + Y 
Sbjct: 226 GE-VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRIEILKVHARKKPIAGDVDYM 402

Query: 318 LLVNQTEGYSGSDIRLLCKEVAMQPLR 344
            + + T+G  G+++  + +  A+  +R
Sbjct: 403 AVASMTDGMVGAELANIVEVAAINMMR 483


>TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPase subunit
           RPT4a, partial (49%)
          Length = 648

 Score = 59.7 bits (143), Expect = 8e-10
 Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +2

Query: 120 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 178
           +V + ++ GL +  R L+E++ +P+  P+ F  + + P KG+LL+GPPGTGKT+LA+A+A
Sbjct: 446 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 625

Query: 179 TECKTTF 185
           +     F
Sbjct: 626 SNIDANF 646


>CN825067 
          Length = 687

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 39/138 (28%), Positives = 71/138 (51%)
 Frame = +1

Query: 155 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARH 214
           +P++ +L +GPPGTGKTM A+ +A +    +  ++   V         K+ ++     + 
Sbjct: 184 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGSQAVTKIHELFDWSKKS 363

Query: 215 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWE 274
                +F+DE DA + +R +     EA R     LL +     ++ ++V  L ATN P +
Sbjct: 364 KRGLLLFIDEADAFLCERNKTYMS-EAQRSALNALLFRTG--DQSKDIVLAL-ATNRPGD 531

Query: 275 LDAAMLRRLEKRILVPLP 292
           LD+A+  R+++ +  PLP
Sbjct: 532 LDSAVADRIDEVLEFPLP 585


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,243,018
Number of Sequences: 28460
Number of extensions: 77957
Number of successful extensions: 461
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of query: 404
length of database: 4,897,600
effective HSP length: 92
effective length of query: 312
effective length of database: 2,279,280
effective search space: 711135360
effective search space used: 711135360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)