BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0265.3
(532 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP071119 31 0.57
TC17665 31 0.57
TC19450 30 0.97
TC11632 similar to UP|Q9FPT4 (Q9FPT4) Ubiquitin-specific proteas... 29 1.7
AV769205 28 2.8
AV422714 28 4.8
BP050007 27 6.3
TC15223 similar to UP|CAE76632 (CAE76632) Leucine rich repeat pr... 27 6.3
AV767152 27 8.2
TC12999 27 8.2
TC16735 similar to UP|Q9LN45 (Q9LN45) F18O14.25, partial (3%) 27 8.2
TC9202 similar to UP|Q93Z17 (Q93Z17) AT5g46160/MCL19_22 (HUELLEN... 27 8.2
>BP071119
Length = 412
Score = 30.8 bits (68), Expect = 0.57
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 167 WERSTNSFHVPFGTLSPTLLDVAA 190
W T+SFH+P+G ++ TL DV+A
Sbjct: 341 WHPETSSFHLPWGEMTITLEDVSA 412
>TC17665
Length = 469
Score = 30.8 bits (68), Expect = 0.57
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 308 AGPFWLLQLWMNAVFEPSLPAKNPPPTVSNTRIEAFRLEALTPPYDASTFEFDFKKYFTL 367
A P W+L EPS+P + P VS T E R+++ T ++ T F +
Sbjct: 73 ASPNWVLPKLPPVKLEPSVPTSSKPTLVS*TSEEKQRMKSFTQLNESFTHSLCFTSMYFS 252
Query: 368 FFELK 372
+ LK
Sbjct: 253 YCLLK 267
>TC19450
Length = 490
Score = 30.0 bits (66), Expect = 0.97
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 3/43 (6%)
Frame = +1
Query: 325 SLPAKNPPPTVSNTRIE---AFRLEALTPPYDASTFEFDFKKY 364
SLP + PPP +++++ + R+ P YD T FD K+
Sbjct: 142 SLPPQRPPPPAPSSQVQRDGSIRVHPKLPDYDELTARFDALKF 270
>TC11632 similar to UP|Q9FPT4 (Q9FPT4) Ubiquitin-specific protease 6,
partial (16%)
Length = 612
Score = 29.3 bits (64), Expect = 1.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 148 LSRSPITYNPAMLLSSLFFWERSTNSFHVPFGTLS-PTLLDVAAITGLWV 196
+ +SP + M SSL S+NS H+PF L+ PT +A+ LWV
Sbjct: 257 ICQSPPPDSLVMSSSSLGLGLSSSNSIHLPFSCLTHPT*CPESALRPLWV 108
>AV769205
Length = 600
Score = 28.5 bits (62), Expect = 2.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 331 PPPTVSNTRIEAFRLEALTPPYDAS 355
PPP+ + R A LE LTPP D+S
Sbjct: 350 PPPSKPDLRRTAHLLEKLTPPLDSS 424
>AV422714
Length = 451
Score = 27.7 bits (60), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 384 PSYGPRWLRNSYPNLPGSENLSQHQVELWQTIL 416
P + P W+ S+P LP L +V LW ++
Sbjct: 196 PWWRPAWVAASWPGLPWPRCLHHRRVLLWNKVV 98
>BP050007
Length = 567
Score = 27.3 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 331 PPPTVSNTRIEAFRLEALTPPYDA 354
PPP+ + R A LE LTPP D+
Sbjct: 183 PPPSTFDLRRTAHLLEKLTPPLDS 254
>TC15223 similar to UP|CAE76632 (CAE76632) Leucine rich repeat protein
precursor, partial (35%)
Length = 876
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/51 (37%), Positives = 22/51 (42%), Gaps = 1/51 (1%)
Frame = -1
Query: 451 PNTLFDK-SLILYPGTITKRSVFDTTIGYYNEEELLGLSPFSFTPSFYVTQ 500
P T FD S YP +TK VFD YY S P+F+ TQ
Sbjct: 147 PPTRFDSNSRYPYPNCLTKLKVFDPKASYYPNSG-------SKEPAFFQTQ 16
>AV767152
Length = 400
Score = 26.9 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 17/38 (43%)
Frame = +2
Query: 310 PFWLLQLWMNAVFEPSLPAKNPPPTVSNTRIEAFRLEA 347
P L ++ P +P N P T SNT F LEA
Sbjct: 131 PHMLTTTFLICTTSPLIPVTNKPMTHSNTASSLFSLEA 244
>TC12999
Length = 528
Score = 26.9 bits (58), Expect = 8.2
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +2
Query: 85 GDELILAFQPSYRFPFLKDPKRTFRSAPPNPSAGEGA 121
G + L F PSY FP L P PSA EGA
Sbjct: 128 GSIISLLFSPSYSFPLLSAP----------PSAREGA 208
>TC16735 similar to UP|Q9LN45 (Q9LN45) F18O14.25, partial (3%)
Length = 539
Score = 26.9 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -2
Query: 362 KKYFTLFFELKRFRSSFAPYHKPSYGPR 389
K +L +LK + SSF+P H P PR
Sbjct: 421 KHILSLI*KLKNYCSSFSPIHTPYINPR 338
>TC9202 similar to UP|Q93Z17 (Q93Z17) AT5g46160/MCL19_22 (HUELLENLOS
PARALOG), partial (71%)
Length = 872
Score = 26.9 bits (58), Expect = 8.2
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 201 YHSSAAPTNPIAIPTDNIAFSKFIKD-----HYVENGEVSDAEHVAFLLY 245
+H+S ++ + + NIA S+ IK Y++NG ++ H +F+ Y
Sbjct: 807 FHNSGFSSHKLIVKNTNIALSQIIKRVHVTLDYIKNGRIN---HSSFMQY 667
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,900,730
Number of Sequences: 28460
Number of extensions: 170725
Number of successful extensions: 936
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of query: 532
length of database: 4,897,600
effective HSP length: 95
effective length of query: 437
effective length of database: 2,193,900
effective search space: 958734300
effective search space used: 958734300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0265.3