BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0264.1
(148 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11595 weakly similar to UP|Q9FKE7 (Q9FKE7) Dimethylaniline mon... 167 7e-43
TC20127 44 9e-06
AW719790 41 1e-04
AW720305 37 0.002
TC12906 similar to PIR|T00584|T00584 indole-3-acetate beta-gluco... 29 0.29
BP075682 27 1.5
TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1... 27 1.5
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 27 1.9
BP054262 26 2.5
AV418663 26 3.2
AV409788 26 3.2
TC17211 similar to UP|PRT2_SEPOF (P80002) Spermatid-specific pro... 26 3.2
TC15597 homologue to UP|Q7XZI4 (Q7XZI4) DP1, partial (16%) 26 3.2
TC11862 similar to UP|Q39856 (Q39856) Epoxide hydrolase , parti... 25 4.2
TC10667 similar to UP|Q9M051 (Q9M051) Glucuronosyl transferase-l... 25 4.2
TC7895 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, co... 25 5.5
BP045105 25 5.5
BP052292 25 7.2
BE122609 25 7.2
TC12555 similar to UP|SPE1_PEA (Q43075) Arginine decarboxylase ... 25 7.2
>TC11595 weakly similar to UP|Q9FKE7 (Q9FKE7) Dimethylaniline monooxygenase
(N-oxide-forming)-like protein, partial (13%)
Length = 435
Score = 167 bits (423), Expect = 7e-43
Identities = 73/110 (66%), Positives = 98/110 (88%)
Frame = +2
Query: 8 MFVSKIAIIGAGVSGIAAAKQLSHHNPIIFEASDSIGGVWRHCSYNSTKLQSHRRDYEFT 67
+ VSKIAIIGAGVSGIAAAKQLSHHNPI+FEA+DSIGG+WRHC YN TKLQS +YEF+
Sbjct: 89 IMVSKIAIIGAGVSGIAAAKQLSHHNPIVFEATDSIGGIWRHCVYNCTKLQSQTWNYEFS 268
Query: 68 DFPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNIRFNSKVVEIRFLGNR 117
DFPW +R+++D+P++LEIL+YL +YA+ FD+ K ++FN+KV+E++F+G +
Sbjct: 269 DFPWPKRESTDYPSYLEILEYLENYAERFDLNKLVKFNTKVLEVKFIGGQ 418
>TC20127
Length = 582
Score = 44.3 bits (103), Expect = 9e-06
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +3
Query: 11 SKIAIIGAGVSGIAAAKQLSHHNP--IIFEASDSIGGVWRHCSYNSTKLQSHRRDYEFTD 68
+ + I+G G SGIA A L+ + I+ E D +W+ +Y+ L ++ E
Sbjct: 30 ASVIIVGGGTSGIATASCLTKKSISYIMLEREDCFASLWQKYTYDRLHLHLRKQSCELPH 209
Query: 69 FPWHERDNSDFPTHLEILKYLHSYAQHFDVMKNI 102
FP+ P + ++YL +Y +HF++ ++
Sbjct: 210 FPFPPSYPHYVPKK-QFIEYLDNYVKHFNIKSSV 308
>AW719790
Length = 449
Score = 40.8 bits (94), Expect = 1e-04
Identities = 26/101 (25%), Positives = 43/101 (41%), Gaps = 26/101 (25%)
Frame = +1
Query: 35 IIFEASDSIGGVW--------------------RHCSYNSTKLQSHRRDYEFTDFPW--- 71
++FE + +GG W + Y S + R F D+P+
Sbjct: 112 VVFEQGEQVGGTWVYTPEVESDPLGQDPKRRIIQSSMYESLRTNLPRESMGFRDYPFVRK 291
Query: 72 --HERDNSDFPTHLEILKYLHSYAQHFDV-MKNIRFNSKVV 109
ERD +P H E+L YL +A F++ + +RF ++VV
Sbjct: 292 DGKERDPRRYPGHREVLMYLKDFAXDFEIDGELVRFQTEVV 414
>AW720305
Length = 577
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Frame = +3
Query: 12 KIAIIGAGVSGIAAAKQLSH--HNPIIFEASDSIGGV 46
++A++G+G +G+AAA QL+ H +FE +D IGG+
Sbjct: 303 RVAVVGSGPAGLAAADQLNKMGHTVTVFERADRIGGL 413
>TC12906 similar to PIR|T00584|T00584 indole-3-acetate
beta-glucosyltransferase homolog T27E13.12
- Arabidopsis thaliana {Arabidopsis thaliana;},
partial (14%)
Length = 675
Score = 29.3 bits (64), Expect = 0.29
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 42 SIGGVWRHCSYNSTK 56
++GG W HC +NSTK
Sbjct: 14 AVGGFWTHCGWNSTK 58
>BP075682
Length = 478
Score = 26.9 bits (58), Expect = 1.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 80 PTHLEILKYLHSYAQHFDVMKNIRFNSKVVEI 111
P H+ +L YLHS Q +++ + F+ +V+++
Sbjct: 247 PKHIGVLGYLHSLQQTINLILHSHFHLEVIKM 342
>TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;}, partial (55%)
Length = 1276
Score = 26.9 bits (58), Expect = 1.5
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -3
Query: 19 GVSGIAAAKQLSHHNPIIFE----ASDSIGGVWRHCSYNSTKLQSHRRDYEFTDF 69
GVSGI KQ HH+ + FE A G V RHC T Y++ DF
Sbjct: 932 GVSGIFH*KQFIHHH-LTFEGMGFAKQQGGHVVRHCEV*ETV----HHGYDYQDF 783
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 26.6 bits (57), Expect = 1.9
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 86 LKYLHSYAQHFDVMKNIRFNSKVVEIRFLGNRVPTEGERDFGSPLPGRPVWEVAVRDNHS 145
+ + H +++ V S VE F G RVP+ + +P RPV V + D HS
Sbjct: 463 ISHHHGFSKFDPVRPTTSGMSSTVE-SFSGPRVPSSSA---AARVPRRPVNPVPIEDCHS 630
Query: 146 D 146
D
Sbjct: 631 D 633
>BP054262
Length = 579
Score = 26.2 bits (56), Expect = 2.5
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = -3
Query: 71 WHERDNSDFPTHLEILKYLHSYAQHFDV-MKNI----RFNSKVVEIRFLGNRVPTEGERD 125
WH +E+L +L +Y F V ++N+ + + E G +V G +
Sbjct: 412 WHTNCTGSPQNSVELLAFLGTYIFKFAVTVENVLSWEKKKTDQEETPNSGPKVVEAGAKK 233
Query: 126 FGSPLPGRPV--WEV 138
F PLP RP+ W+V
Sbjct: 232 FLIPLPERPLSWWKV 188
>AV418663
Length = 344
Score = 25.8 bits (55), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 89 LHSYAQHFDVMKNIRFNSKV 108
LHS +QH+DV + FN V
Sbjct: 136 LHSSSQHYDVQPSFDFNQSV 195
>AV409788
Length = 423
Score = 25.8 bits (55), Expect = 3.2
Identities = 13/30 (43%), Positives = 21/30 (69%), Gaps = 2/30 (6%)
Frame = +2
Query: 12 KIAIIGAGVSGIAAAKQL--SHHNPIIFEA 39
K+AIIGAG++G++ A +L H I+E+
Sbjct: 332 KVAIIGAGLAGMSTAVELLDQGHEVDIYES 421
>TC17211 similar to UP|PRT2_SEPOF (P80002) Spermatid-specific protein T2
[Contains: Sperm protamine SP2], partial (31%)
Length = 540
Score = 25.8 bits (55), Expect = 3.2
Identities = 12/41 (29%), Positives = 23/41 (55%), Gaps = 8/41 (19%)
Frame = +2
Query: 13 IAIIGAGVSGIAAAKQLSHHNP--------IIFEASDSIGG 45
+ I+GAG++G + A L ++P ++FE + +GG
Sbjct: 68 VCIVGAGIAGSSVAHFLRKYSPEPTPTTKILVFERNAIVGG 190
>TC15597 homologue to UP|Q7XZI4 (Q7XZI4) DP1, partial (16%)
Length = 581
Score = 25.8 bits (55), Expect = 3.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 52 YNSTKLQSHRRDYEFTDFPWHERDNSDFPTH 82
+NST + H +Y +HER +D TH
Sbjct: 9 FNSTPFELHDDNYVLKAMKFHERPENDNITH 101
>TC11862 similar to UP|Q39856 (Q39856) Epoxide hydrolase , partial (50%)
Length = 564
Score = 25.4 bits (54), Expect = 4.2
Identities = 14/52 (26%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Frame = -1
Query: 2 IREHNTMFVSKIA--IIGAGVSGIAAAKQLSHHNPIIFEASDSIGGVWRHCS 51
IR H+T+ + + ++ GV + A Q HH F + + ++ HCS
Sbjct: 180 IRGHSTVSLRAESQNLVAPGVPELREAVQEQHHWAFSFLCNMHLNAIYLHCS 25
>TC10667 similar to UP|Q9M051 (Q9M051) Glucuronosyl transferase-like
protein, partial (20%)
Length = 824
Score = 25.4 bits (54), Expect = 4.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 42 SIGGVWRHCSYNST 55
+IG W HC +NST
Sbjct: 55 AIGAFWTHCGWNST 96
>TC7895 homologue to UP|Q8GTE3 (Q8GTE3) Ribosomal protein S3a, complete
Length = 1106
Score = 25.0 bits (53), Expect = 5.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 15 IIGAGVSGIAAAKQLSHHNPIIFEASDSIGGVWRHCSYNST 55
++G G+SG+ A LS NP++ +DS G + S +S+
Sbjct: 143 LLGEGISGLLLAALLSLGNPLVL--ADSHGCFFSSSSSSSS 27
>BP045105
Length = 531
Score = 25.0 bits (53), Expect = 5.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 114 LGNRVPTEGERDFGSPLPGRPVWEVAVRDN 143
L + V E E D G G W V VR+N
Sbjct: 413 LRSEVEGEEEEDRGGECDGSHTWRVTVREN 324
>BP052292
Length = 478
Score = 24.6 bits (52), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 51 SYNSTKLQSHRRDYEFTDFPW 71
S+ ST + HRR+ F FPW
Sbjct: 252 SFLSTPRRRHRREILFLFFPW 314
>BE122609
Length = 356
Score = 24.6 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 104 FNSKVVEIRFLGNRVPTEGERDFGSP 129
FNSK ++IR + ++ P R +GSP
Sbjct: 273 FNSK*LQIRCMLSKAPPPLSRRYGSP 196
>TC12555 similar to UP|SPE1_PEA (Q43075) Arginine decarboxylase (ARGDC)
(ADC) , partial (20%)
Length = 480
Score = 24.6 bits (52), Expect = 7.2
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +1
Query: 29 LSHHNPIIFEASDSIGGVWRHCSYNSTKLQ 58
+SHH+ +IFEA + G R + ++ +LQ
Sbjct: 82 VSHHSVLIFEAVGASGNRGRDSALSTIELQ 171
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,876,040
Number of Sequences: 28460
Number of extensions: 38852
Number of successful extensions: 268
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of query: 148
length of database: 4,897,600
effective HSP length: 82
effective length of query: 66
effective length of database: 2,563,880
effective search space: 169216080
effective search space used: 169216080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0264.1