TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0263.5
         (295 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV423488                                                              170  2e-43
CN825096                                                               28  1.8
TC15720 similar to UP|O35328 (O35328) Proline-rich protein 9-1 (...    28  2.4
TC15796 similar to UP|Q948T1 (Q948T1) Two-pore calcium channel, ...    28  2.4
TC17097 similar to UP|Q9SE92 (Q9SE92) Adenosine-5'-phosphosulfat...    27  3.1
BP030863                                                               27  4.1
TC15570 similar to GB|AAP21363.1|30102890|BT006555 At4g38290 {Ar...    27  4.1
TC10078                                                                27  5.4
AW719985                                                               27  5.4
TC8125                                                                 26  7.0
TC10694 similar to PIR|T05577|T05577 uncoupling protein homolog ...    26  9.1
AV414175                                                               26  9.1

>AV423488 
          Length = 487

 Score =  170 bits (431), Expect = 2e-43
 Identities = 77/110 (70%), Positives = 91/110 (82%)
 Frame = +3

Query: 12  NVGVTDFPEFSTNMTLGDMTAVNEVTPNEEDSTPRSRKTQSPAWNTEQNLVLISGWIKYG 71
           +V   +FPEFST MTLG MTA N+ TPN+ED+TP+S+KT SPAW+T QNLVLIS WI  G
Sbjct: 156 SVDAPEFPEFSTQMTLGGMTAANQFTPNQEDTTPKSKKTHSPAWSTAQNLVLISRWINRG 335

Query: 72  TSSVVGRNQKGETYWSQIAEYCHEHCSFDPPREGGACRNCFNYMSNQLNK 121
           TSSVVG+NQKGET+W  IAEYC+EHCSFDPPR+G ACRN +NYM+  L K
Sbjct: 336 TSSVVGKNQKGETFWRDIAEYCNEHCSFDPPRDGIACRNRWNYMNKILGK 485


>CN825096 
          Length = 730

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 251 KISSVQQEANRLEKMKMFLQLSFEEHLDDRRKELLKQLSQ 290
           KI+  Q   N+  +M   L     EH+DDR K+LL Q+ Q
Sbjct: 321 KIACAQAAKNKWVEMGKQLITRKVEHVDDRVKDLLLQVQQ 440


>TC15720 similar to UP|O35328 (O35328) Proline-rich protein 9-1 (Fragment),
           partial (11%)
          Length = 1115

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 16/46 (34%), Positives = 19/46 (40%)
 Frame = +3

Query: 168 LCNEPHYCSQVGGNLGSGSSGSKRSHESDACGSNSIGSIPRPMGRE 213
           LC      S  GG+ G GSS S  S  S  C S  I  +   +  E
Sbjct: 33  LCGNDSGTSFTGGSSGGGSSSSSISSSSAGCFSGYITEVDEEVEEE 170


>TC15796 similar to UP|Q948T1 (Q948T1) Two-pore calcium channel, partial
           (42%)
          Length = 1524

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 155 NSHPFTLMKEWLALCNEPH 173
           N  PFT +KE+ +LC EPH
Sbjct: 60  NILPFTHLKEFESLCEEPH 116


>TC17097 similar to UP|Q9SE92 (Q9SE92) Adenosine-5'-phosphosulfate kinase
           (Fragment) , partial (39%)
          Length = 576

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
 Frame = -3

Query: 69  KYGTSSV----VGRNQKGETYWSQIAE-YCH 94
           ++GT++V    +GRNQ G+TY + I + +CH
Sbjct: 127 QHGTANVPISSIGRNQTGDTY*TSIGK*FCH 35


>BP030863 
          Length = 453

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
 Frame = -3

Query: 179 GGNLGSGS-------SGSKRSHESDACGSNSIGSIPRPMGREAAK 216
           G N GS S       SGSK  H   +  S   GS+ +P  R ++K
Sbjct: 349 GSNHGSDSPSQDAPASGSKHGHRRKSKNSEDGGSVRKPSSRRSSK 215


>TC15570 similar to GB|AAP21363.1|30102890|BT006555 At4g38290 {Arabidopsis
           thaliana;}, partial (41%)
          Length = 642

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
 Frame = +1

Query: 230 VVNNEWSE-YKQLRE-----------QELERLEKISSVQQEANRLEKMKMFLQLSFEEHL 277
           +++ +W E Y+QL+            + ++ L+ +SSV+   + +E  K  +QLS EE  
Sbjct: 106 LIDMQWEERYQQLQMLLRKLDQSDQVEYVQMLQSLSSVELSRHAVELEKRAIQLSLEEAK 285

Query: 278 DDRRKELLKQLSQ 290
           + +R  +L  L +
Sbjct: 286 ELQRVAVLNVLGK 324


>TC10078 
          Length = 500

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 96  HCSFDPPREGGACRNCFNYMSNQLNKW 122
           HC +   R G +C +CFN+   +   W
Sbjct: 151 HC*YKLIRGGSSCCSCFNFTEEEEANW 71


>AW719985 
          Length = 359

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 12/42 (28%), Positives = 19/42 (44%)
 Frame = +2

Query: 177 QVGGNLGSGSSGSKRSHESDACGSNSIGSIPRPMGREAAKKK 218
           + G   G+G S  +  H  D CG       PR   RE+ +++
Sbjct: 143 RAGEGGGTGWSWEQPRHGGDGCGGGGSSCHPRSESRESLRRR 268


>TC8125 
          Length = 1373

 Score = 26.2 bits (56), Expect = 7.0
 Identities = 15/47 (31%), Positives = 20/47 (41%)
 Frame = -1

Query: 28  GDMTAVNEVTPNEEDSTPRSRKTQSPAWNTEQNLVLISGWIKYGTSS 74
           G  T  N   P    S P S  TQ+P+  +   L    GW++   SS
Sbjct: 812 GVSTNQNHHHPYRNLSRPLSHTTQTPSSTSRHRLQRQQGWLRQAFSS 672


>TC10694 similar to PIR|T05577|T05577 uncoupling protein homolog F22K18.230
           - Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (43%)
          Length = 604

 Score = 25.8 bits (55), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 179 GGNLGSGSSGSKRSHESDACGSNS 202
           GG+ G  S G+ RS +SDA G  S
Sbjct: 336 GGDAGEESGGAFRSDDSDADGDGS 265


>AV414175 
          Length = 226

 Score = 25.8 bits (55), Expect = 9.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 188 GSKRSHESDACGSNSIGSIPRPMGREAAKKKNKKKSRD 225
           G++ SHES       +GS  R  GR       ++ SRD
Sbjct: 162 GNETSHESKPITPKRVGSTGRRRGRRGLWPLTRRTSRD 49


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.312    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,619,376
Number of Sequences: 28460
Number of extensions: 86467
Number of successful extensions: 395
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of query: 295
length of database: 4,897,600
effective HSP length: 90
effective length of query: 205
effective length of database: 2,336,200
effective search space: 478921000
effective search space used: 478921000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)