BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0263.4
(195 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CN825001 203 2e-53
TC13527 similar to UP|Q39629 (Q39629) Oleosin-like protein, part... 82 6e-17
TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation ... 30 0.36
TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%) 29 0.47
TC11613 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), pa... 27 2.3
BP085372 27 2.3
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 27 3.1
BI420246 26 4.0
TC16471 similar to UP|Q41384 (Q41384) Protein kinase (Fragment) ... 26 4.0
AV408048 26 4.0
CN825625 26 5.2
TC9669 similar to UP|Q9LQA7 (Q9LQA7) F4N2.10, partial (16%) 26 5.2
TC16569 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruv... 26 5.2
AV771668 26 5.2
BP034485 25 6.8
BP041085 25 6.8
AV770208 25 6.8
TC9159 similar to UP|HXT4_YEAST (P32467) Low-affinity glucose tr... 25 6.8
TC13557 similar to AAQ62429 (AAQ62429) At4g12450, partial (27%) 25 6.8
TC10937 similar to PIR|C96522|C96522 F11A17.20 [imported] - Arab... 25 6.8
>CN825001
Length = 692
Score = 203 bits (516), Expect = 2e-53
Identities = 119/197 (60%), Positives = 137/197 (69%), Gaps = 8/197 (4%)
Frame = +1
Query: 7 QVHVHTTATHRYETGGANPPQRYEAGGINFNNQPQ-RYGGGGGGFSSLFPERGPSASQII 65
Q+ VHTT THRYETG NP QRYE G N PQ RY G E+GPS SQ++
Sbjct: 97 QIQVHTT-THRYETG-VNPQQRYETGV----NYPQHRYEEG---------EKGPSTSQVV 231
Query: 66 AVAAGVPIGGTLLLLAGISLIASLIGLAVFTPLLILFSPVIVPAVMTIGLAVAGILTSGA 125
AVAAG+P+GG LL LAG++L +L GLAV TPL ILFSPV+VPA + IGLAVAG LTSGA
Sbjct: 232 AVAAGLPVGGILLTLAGLTLAGTLTGLAVTTPLFILFSPVLVPATIVIGLAVAGFLTSGA 411
Query: 126 FGLTGLMSFSWLMNYIRETRGIVPEQLDYAKNRMADMADY-------VGQKTKEVGHDIQ 178
GLT L SFSW+MNYIR+++G P QL+ AK RMAD+A Y VGQKTKEVG DIQ
Sbjct: 412 CGLTALSSFSWVMNYIRQSQGTGPGQLESAKRRMADVAGYVGQKTKEVGQKTKEVGQDIQ 591
Query: 179 TKAHEAKRTPITTHDTK 195
KA +AK HDTK
Sbjct: 592 AKAQDAK-ADTKAHDTK 639
>TC13527 similar to UP|Q39629 (Q39629) Oleosin-like protein, partial (80%)
Length = 603
Score = 82.0 bits (201), Expect = 6e-17
Identities = 38/104 (36%), Positives = 63/104 (60%)
Frame = +2
Query: 60 SASQIIAVAAGVPIGGTLLLLAGISLIASLIGLAVFTPLLILFSPVIVPAVMTIGLAVAG 119
+++Q I A V GG+LL+LAG+ L ++I L + TPL ++FSPV+VPAV+ + L G
Sbjct: 125 NSNQFIKAATAVTAGGSLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSLLGLG 304
Query: 120 ILTSGAFGLTGLMSFSWLMNYIRETRGIVPEQLDYAKNRMADMA 163
L +G FG + +W+ Y+ +QLD A++++ + A
Sbjct: 305 FLAAGGFGAAAITVLAWIYRYVTGKHPPGADQLDTARHKLMNKA 436
>TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c), partial (23%)
Length = 986
Score = 29.6 bits (65), Expect = 0.36
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = +2
Query: 18 YETGGANPPQRYEAGGINFNNQPQRYGGGGGGFSSLFPERG 58
Y +GG P +A G ++ R GGGGGG+ S + G
Sbjct: 566 YGSGGGRPFAFNQAAGGYSRDRTGRGGGGGGGYQSQYGGSG 688
>TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%)
Length = 1158
Score = 29.3 bits (64), Expect = 0.47
Identities = 21/57 (36%), Positives = 24/57 (41%)
Frame = +3
Query: 17 RYETGGANPPQRYEAGGINFNNQPQRYGGGGGGFSSLFPERGPSASQIIAVAAGVPI 73
R GGA QR E +N N Q GGGG G PS +A A VP+
Sbjct: 135 RPRVGGAMQQQREERERLN--NNLQSGGGGGLGLVDWSNINNPSVLNSLAAAGFVPV 299
Score = 25.0 bits (53), Expect = 8.9
Identities = 9/21 (42%), Positives = 14/21 (65%)
Frame = +3
Query: 44 GGGGGGFSSLFPERGPSASQI 64
GGGGGG++ L+ P+ Q+
Sbjct: 354 GGGGGGYNDLYVPSLPNLCQV 416
>TC11613 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), partial (26%)
Length = 731
Score = 26.9 bits (58), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = -1
Query: 77 LLLLAGISLIASLIGLAVFTPLLILFSPVIVPAVMTIGLAVA 118
L L+ G + LA+FTPLL+ F ++ V + L VA
Sbjct: 329 LFLVEGFKFVKIGTCLAIFTPLLVAFFDLLEVLVDVLPLLVA 204
>BP085372
Length = 459
Score = 26.9 bits (58), Expect = 2.3
Identities = 13/34 (38%), Positives = 15/34 (43%)
Frame = -3
Query: 17 RYETGGANPPQRYEAGGINFNNQPQRYGGGGGGF 50
R E N Y G + P YGGGGGG+
Sbjct: 457 RKEGSYDNKGSDYYGGTGGYGGVPGSYGGGGGGY 356
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 26.6 bits (57), Expect = 3.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 43 YGGGGGGFSSLFPERGPSAS-QIIAVAAGVPIGG 75
+GGGGGG E+G AS IIA+ A GG
Sbjct: 338 FGGGGGGCGGDGREQGKEASPDIIALPAITEAGG 237
>BI420246
Length = 448
Score = 26.2 bits (56), Expect = 4.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 35 NFNNQPQRYGGGGGG----FSSLFPERGPSASQIIAVAAGVPIGGTLLLLAGISLIA 87
N N P GGGGGG FSSL ++Q + A LAG++L+A
Sbjct: 186 NNNVTPFISGGGGGGGGVRFSSLMAATAAPSTQTVLFTA----------LAGLALVA 326
>TC16471 similar to UP|Q41384 (Q41384) Protein kinase (Fragment) , partial
(12%)
Length = 617
Score = 26.2 bits (56), Expect = 4.0
Identities = 26/82 (31%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Frame = -2
Query: 59 PSASQIIAVAAG-VPI-------GGTLLLLAGISLIASLIGLAVFTPLLILFSPVIVPAV 110
PS+SQ I A G PI GG L+L LI+ G LI +PV+ P+
Sbjct: 241 PSSSQFIFFATGSFPIN*RGTSNGGGLMLRIKGQLISRKKGCC-----LISLAPVVDPSR 77
Query: 111 MTIGLAVAGILTSGAFGLTGLM 132
+ L + ++ A LTG++
Sbjct: 76 LAGSLCNSALINCLAARLTGML 11
>AV408048
Length = 427
Score = 26.2 bits (56), Expect = 4.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +3
Query: 35 NFNNQPQRYGGGGGG----FSSLFPERGPSASQIIAVAAGVPIGGTLLLLAGISLIA 87
N N P GGGGGG FSSL ++Q + A LAG++L+A
Sbjct: 219 NNNVTPFISGGGGGGGGVRFSSLMAATAAPSTQTVLFTA----------LAGLALVA 359
>CN825625
Length = 583
Score = 25.8 bits (55), Expect = 5.2
Identities = 16/37 (43%), Positives = 20/37 (53%)
Frame = +2
Query: 22 GANPPQRYEAGGINFNNQPQRYGGGGGGFSSLFPERG 58
GA P + E ++ QPQ + GGGG S LFP G
Sbjct: 68 GAGRPLKKEEKVVD---QPQNFLGGGG-ISGLFPSPG 166
>TC9669 similar to UP|Q9LQA7 (Q9LQA7) F4N2.10, partial (16%)
Length = 472
Score = 25.8 bits (55), Expect = 5.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +3
Query: 25 PPQRYEAGGINFNNQPQRYGGGGGGF---SSLFPERG 58
PP + G + P +GGGGG + SS P +G
Sbjct: 249 PPSPHHGSGGGHGSTPPSHGGGGGYYNPPSSPSPPKG 359
>TC16569 similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (46%)
Length = 827
Score = 25.8 bits (55), Expect = 5.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 44 GGGGGGFSSLFPERG 58
GGGGGGF S F E G
Sbjct: 344 GGGGGGFCSDFQEPG 388
>AV771668
Length = 480
Score = 25.8 bits (55), Expect = 5.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Frame = +3
Query: 19 ETGGANPPQRYEAGG-----INFNNQP 40
E GGAN P+R+E G I +N QP
Sbjct: 210 E*GGANSPKRWERDG*KTWNIRYNTQP 290
>BP034485
Length = 485
Score = 25.4 bits (54), Expect = 6.8
Identities = 12/31 (38%), Positives = 15/31 (47%)
Frame = +3
Query: 19 ETGGANPPQRYEAGGINFNNQPQRYGGGGGG 49
ET N + GG N + + GGGGGG
Sbjct: 168 ETANKNKNKNKNNGGGNNKGKEGKKGGGGGG 260
>BP041085
Length = 449
Score = 25.4 bits (54), Expect = 6.8
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Frame = +1
Query: 22 GANPPQR------YEAGGINFNNQPQRYGGGGGGF 50
GAN R Y GG NNQ G G GGF
Sbjct: 199 GANSGDRNSYRRAYNYGGRTINNQGTFNGNGNGGF 303
>AV770208
Length = 408
Score = 25.4 bits (54), Expect = 6.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +3
Query: 1 MAQPQQQVHVHTTATH---RYETGG 22
M + + +H+HTT TH Y TGG
Sbjct: 96 MKKHRAHIHIHTTYTHNNQNYVTGG 170
>TC9159 similar to UP|HXT4_YEAST (P32467) Low-affinity glucose transporter
HXT4 (Low-affinity glucose transporter LGT1), partial
(5%)
Length = 728
Score = 25.4 bits (54), Expect = 6.8
Identities = 10/56 (17%), Positives = 30/56 (52%)
Frame = +3
Query: 105 VIVPAVMTIGLAVAGILTSGAFGLTGLMSFSWLMNYIRETRGIVPEQLDYAKNRMA 160
V+ + +++ + T FG+ ++ +++ ++ ET+G+ E+++ N+ A
Sbjct: 267 VVSQSFLSLTQTIGTAWTFMMFGIIAIIGIFFVLIFVPETKGVPMEEVESMLNKRA 434
>TC13557 similar to AAQ62429 (AAQ62429) At4g12450, partial (27%)
Length = 538
Score = 25.4 bits (54), Expect = 6.8
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 43 YGGGGGGFSSLFPERGPSASQIIAV 67
YGG GG S FPER SA AV
Sbjct: 33 YGGLDGGCSWSFPERNGSAICTFAV 107
>TC10937 similar to PIR|C96522|C96522 F11A17.20 [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (21%)
Length = 551
Score = 25.4 bits (54), Expect = 6.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 82 GISLIASLIGLAVFTPLLILFSPVIVPAVMTIGLAVAGIL 121
GISLI+ L+G +FT ++ I I L+VA L
Sbjct: 132 GISLISLLLGFTIFTTIMATTPQTIRNRKSMIHLSVATCL 13
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,946,612
Number of Sequences: 28460
Number of extensions: 38400
Number of successful extensions: 395
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of query: 195
length of database: 4,897,600
effective HSP length: 85
effective length of query: 110
effective length of database: 2,478,500
effective search space: 272635000
effective search space used: 272635000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0263.4