TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.8
         (312 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5...    58  2e-09
TC19193 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980)...    34  0.028
TC14434                                                                33  0.081
BP075426                                                               32  0.14
BP062330                                                               28  1.5
AV421913                                                               28  1.5
TC10768 weakly similar to UP|Q8I8Z5 (Q8I8Z5) Heat shock protein ...    28  2.6
AV410254                                                               28  2.6
TC15716 similar to UP|O78327 (O78327) Transketolase 1 , partial ...    27  3.4
TC18741                                                                27  4.4
BP041362                                                               27  5.8
TC14927 weakly similar to GB|BAC16200.1|22831356|AP005486 transp...    26  9.9
BI420041                                                               26  9.9
TC8309 UP|O22306 (O22306) Nlj21, complete                              26  9.9

>TC19357 weakly similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980),
           partial (16%)
          Length = 577

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 37/98 (37%), Positives = 48/98 (48%)
 Frame = +2

Query: 204 EVFNYYHSSLRNVIERSFGCCKAKWKILGSMPSYDLKTQNKIITACMALHNFIRRNDRSD 263
           E+FN+ H  LR  I RSF   KA++ IL   P Y  + Q  I+ A   LHN IRR DR+D
Sbjct: 8   ELFNHRHYFLRGAILRSFTVLKARFPILIPAPQYSFQIQRDIVIAACVLHNIIRREDRND 187

Query: 264 EEFDANYENEDGGGENEAGPSTVTWEEPDFQSSLQMEQ 301
             F++        G       TV  E PD Q    M++
Sbjct: 188 WLFNSL-------GGTPVDELTVLDELPDVQLLSSMQE 280


>TC19193 similar to UP|Q9FHY5 (Q9FHY5) Emb|CAB72466.1 (At5g41980), partial
           (8%)
          Length = 529

 Score = 34.3 bits (77), Expect = 0.028
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = +1

Query: 239 LKTQNKIITACMALHNFIRRNDRSDEEF-----DANYENED 274
           L+TQ K++ A  ALHNFIRR +  D  F     DA++  E+
Sbjct: 1   LQTQVKLVVAACALHNFIRRENPDDRLFKMYGEDASFTMEE 123


>TC14434 
          Length = 644

 Score = 32.7 bits (73), Expect = 0.081
 Identities = 28/135 (20%), Positives = 50/135 (36%), Gaps = 1/135 (0%)
 Frame = +2

Query: 173 YPTFMGFLGPYKKNRYHLPQFRNGPRITGRVEVFNYYHSSLRNVIERSFGCCKAKWKILG 232
           +P   G L PY               +T     FN     ++ + + +FG  K +W  L 
Sbjct: 59  HPLMEGVLVPYTHQN-----------LTWTQHAFNEKVDEIQGLAKDAFGRLKGRWSCLQ 205

Query: 233 SMPSYDLKTQNKIITACMALHNFIR-RNDRSDEEFDANYENEDGGGENEAGPSTVTWEEP 291
                 L+    ++ AC  LHN     N++ D ++  +  +++   EN            
Sbjct: 206 KRTEGKLEDLPGVLGACCVLHNICEMNNEKVDPDWKFDVFDDEMVAENGV---------- 355

Query: 292 DFQSSLQMEQIREHI 306
               S+  EQ R+H+
Sbjct: 356 ---RSVSAEQARDHM 391


>BP075426 
          Length = 342

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 14/30 (46%), Positives = 21/30 (69%)
 Frame = -3

Query: 245 IITACMALHNFIRRNDRSDEEFDANYENED 274
           I+ A M +HNFIRR   +D +F  ++E+ED
Sbjct: 298 ILIATMTIHNFIRRKSATDSDF-MHFEDED 212


>BP062330 
          Length = 354

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +2

Query: 288 WEEPDFQSSLQMEQIREHIKNMFP 311
           W   DFQ  LQME + + +KN +P
Sbjct: 104 WHYIDFQMDLQMEGLSKIVKNQYP 175


>AV421913 
          Length = 430

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = +2

Query: 257 RRNDRSDEEFDANYENEDGGG-----ENEAGPSTVTWEEP---DFQS 295
           R   R D E+D      DGGG     E+E    ++ W EP   DFQS
Sbjct: 248 REERRVDREYDVVLVPSDGGGCLSDSESEGSDWSIGWLEPHGSDFQS 388


>TC10768 weakly similar to UP|Q8I8Z5 (Q8I8Z5) Heat shock protein 90
           (Fragment), partial (4%)
          Length = 560

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +2

Query: 258 RNDRSDEEFDANYENEDG-GGENEAGPST---VTWEEPDFQSSLQMEQIRE 304
           ++D  DEE D + E +DG   E + GPST   +T EE + Q +LQ   ++E
Sbjct: 71  KSDDEDEEEDKDKEKKDGEEDEKKKGPSTLSKLTAEEAEHQ-ALQAAVLQE 220


>AV410254 
          Length = 403

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 257 RRNDRSDEEFDANYENEDGGGENEAGPSTVTWEEPDFQSSL 297
           R + RSD + D+  E +   G+    PS  +W+ P+    L
Sbjct: 38  RSSGRSDRDSDSQSELDSDSGKRFGNPSRRSWQGPEHDGLL 160


>TC15716 similar to UP|O78327 (O78327) Transketolase 1 , partial (8%)
          Length = 567

 Score = 27.3 bits (59), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (49%)
 Frame = -2

Query: 159 IFYCLGKYYLVDAGYPTFMGFLGPYKKNRYHLPQ 192
           IF+ L     +D G   F+GF   Y   R+ LPQ
Sbjct: 128 IFFLLEHLLRIDQGLWLFLGFQQAYANQRWMLPQ 27


>TC18741 
          Length = 669

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = -2

Query: 184 KKNRYHLPQFRNGPRITGRVEVF----NYYHSSLRNVIERSF 221
           K  RY  P    G R    V+      N+YHS   N+ ERSF
Sbjct: 218 KLERYKAPVIIEGSRCCLEVQTSHHMNNFYHSQNANIHERSF 93


>BP041362 
          Length = 560

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 2/31 (6%)
 Frame = -1

Query: 85  VGKVTLPLMSWLLVISTCVSPL--SGLGGRV 113
           V  VTL L +WLLV + C   +  +GLGG V
Sbjct: 200 VAMVTLLLGTWLLVFARCAFMVFTAGLGGAV 108


>TC14927 weakly similar to GB|BAC16200.1|22831356|AP005486 transposase-like
           {Oryza sativa (japonica cultivar-group);} , partial
           (11%)
          Length = 539

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +3

Query: 164 GKYYLVDAGYPTFMGF 179
           GKY+LVDAGY    G+
Sbjct: 177 GKYFLVDAGYTNGPGY 224


>BI420041 
          Length = 452

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 18/82 (21%), Positives = 38/82 (45%)
 Frame = -2

Query: 100 STCVSPLSGLGGRVLHMMLRFLWRLCVDHHCIFPILLMVRNI*NL*LYNIVTLMY*HAII 159
           ST  +P++ +G  +L  +L+  + L V    +  +L++V          +   +    I+
Sbjct: 409 STT*TPITCIGHTILIFILKLFFFLFVVVIVLVTVLVLV----------VQWFLVIEFIV 260

Query: 160 FYCLGKYYLVDAGYPTFMGFLG 181
           F+ +  Y+L D G+  + G  G
Sbjct: 259 FFFIH*YFLDDGGFENWFGIRG 194


>TC8309 UP|O22306 (O22306) Nlj21, complete
          Length = 1063

 Score = 25.8 bits (55), Expect = 9.9
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 73  FVFLLNSRQLILVGKVTLPLMSWLLVISTCVSPLSGLGGRVLHMMLRFLWRLCVDHHCIF 132
           F + +N   L+L   ++L + S   +    + PL+ L    LH++  F W L   H    
Sbjct: 40  FFYFINLSSLLLYKPISLLISSHQKLALFPIPPLTFLF*NHLHILFVFQWPLLRLHQQTL 219

Query: 133 PILL 136
           P ++
Sbjct: 220 PSMM 231


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.342    0.152    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,800,502
Number of Sequences: 28460
Number of extensions: 86603
Number of successful extensions: 783
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of query: 312
length of database: 4,897,600
effective HSP length: 90
effective length of query: 222
effective length of database: 2,336,200
effective search space: 518636400
effective search space used: 518636400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 55 (25.8 bits)