TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.4
         (180 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065719                                                               45  7e-06
BP033666                                                               33  0.029
TC12593                                                                28  1.2
BP041540                                                               26  4.6
BP073649                                                               26  4.6

>BP065719 
          Length = 567

 Score = 45.1 bits (105), Expect = 7e-06
 Identities = 32/120 (26%), Positives = 54/120 (44%), Gaps = 2/120 (1%)
 Frame = +3

Query: 8   FSAVVREVAIPDNMKSLALEAYSG--GTDPKDHLLYFSMKMVISAASDAVKCRMFPSMFK 65
           F   V E  +P   K      +SG  G    +H+  + ++    A ++ +K + FPS   
Sbjct: 135 FIEEVLESELPRGWKVPKFTKFSGDSGESTVEHIARYQIEAGDLAINENLKMKYFPSSLT 314

Query: 66  GTAMAWFTTLPLGSIVKFRDFSSKFLIQFSASKIKQVTIDDLYNVRQLERETLKQYVKRY 125
             A  WFTTL   S+  +      F  QF   + K V+  DL +V++   E++  Y+ R+
Sbjct: 315 KNAFTWFTTLAPRSVHTWAQLERIFHEQFFRGECK-VSXKDLASVKRKPAESIDDYLNRF 491


>BP033666 
          Length = 342

 Score = 33.1 bits (74), Expect = 0.029
 Identities = 17/38 (44%), Positives = 20/38 (51%)
 Frame = -2

Query: 64  FKGTAMAWFTTLPLGSIVKFRDFSSKFLIQFSASKIKQ 101
           FKG AM WF   P  SI  F DFS+     F   K+K+
Sbjct: 338 FKGVAMTWFIKQPPYSISNFTDFSTNS*HXFQPIKLKR 225



 Score = 29.6 bits (65), Expect = 0.32
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 72  FTTLPLGSIVKFRDFSSKFLIQFSASKIKQVTIDDLYNVRQLERETLKQYVKRY 125
           + T P+     +R F + FL  FSA++ ++ T  DL+N+ Q   E ++ Y   Y
Sbjct: 312 YQTAPIFHFKLYR-FFN*FLTXFSANQTQKATSADLFNICQQVGERVRPYFSLY 154


>TC12593 
          Length = 846

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 18/59 (30%), Positives = 26/59 (43%)
 Frame = +1

Query: 7   PFSAVVREVAIPDNMKSLALEAYSGGTDPKDHLLYFSMKMVISAASDAVKCRMFPSMFK 65
           P+ A   +   PDN+     +  SG  DP  +L Y +M     A  DAV+  +    FK
Sbjct: 607 PYFAYKSDPGRPDNLAFCLFQPNSGRVDPNTNLNYMNM---FDAQVDAVRSALDSLGFK 774


>BP041540 
          Length = 521

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17  IPDNMKSLALEAYSGGTDPKDH-LLYFSMKMVISAA 51
           I DN+  +A +AYS G+D + H  L  ++KM+++++
Sbjct: 155 ITDNL*LVAKDAYSQGSDLETHPYLINNLKMILTSS 262


>BP073649 
          Length = 446

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = -1

Query: 56  KCRMFPSMFKGTAMAWFTTLPLGSIVKFRDFSSKFL 91
           + +MFP       M   T++ L SI+K R +S KFL
Sbjct: 248 EAKMFPFYQLNYDMFGSTSISLKSILKSRGYSQKFL 141


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,176,004
Number of Sequences: 28460
Number of extensions: 21617
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of query: 180
length of database: 4,897,600
effective HSP length: 84
effective length of query: 96
effective length of database: 2,506,960
effective search space: 240668160
effective search space used: 240668160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)