TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0262.10
         (145 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV416761                                                              124  8e-30
TC17346 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial ...    40  2e-04
TC15021 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (6%)             29  0.36
BP040833                                                               27  1.4
TC16393 similar to UP|Q93YZ6 (Q93YZ6) AT4g00750/F15P23_1, partia...    27  1.8
BP075152                                                               26  2.4
BP037555                                                               26  2.4
TC17071 similar to UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxid...    25  4.0
TC13327 similar to UP|O48939 (O48939) Polyphosphoinositide bindi...    25  6.9
TC15457 similar to UP|Q9LV01 (Q9LV01) Gb|AAC14404.1, partial (21%)     24  9.0

>AV416761 
          Length = 224

 Score =  124 bits (310), Expect = 8e-30
 Identities = 58/64 (90%), Positives = 61/64 (94%)
 Frame = +2

Query: 1  MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
          MK PAS+FYRNPVKFRMPTAENLVPIRLDIEIDA+RYKDAFTWNPSDPD EVGV A+RTV
Sbjct: 32 MKAPASIFYRNPVKFRMPTAENLVPIRLDIEIDAQRYKDAFTWNPSDPDSEVGVCAKRTV 211

Query: 61 KDLK 64
          KDLK
Sbjct: 212KDLK 223



 Score = 32.0 bits (71), Expect = 0.043
 Identities = 14/47 (29%), Positives = 28/47 (58%)
 Frame = +2

Query: 92  MYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDM 138
           M   E ++PI+LD+ ++    KD F W+ ++ +S++   A+   KD+
Sbjct: 80  MPTAENLVPIRLDIEIDAQRYKDAFTWNPSDPDSEVGVCAKRTVKDL 220


>TC17346 similar to UP|P93045 (P93045) SNF5 homolog BSH, partial (39%)
          Length = 781

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 128 EELARIFCKDMGIEDPEV 145
           EE ARIFCKDMGIEDPEV
Sbjct: 3   EEFARIFCKDMGIEDPEV 56


>TC15021 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (6%)
          Length = 522

 Score = 28.9 bits (63), Expect = 0.36
 Identities = 15/63 (23%), Positives = 31/63 (48%), Gaps = 1/63 (1%)
 Frame = -3

Query: 31  EIDAKRYKDAFTWNPSDPDHEVGVFARRTVKDLKLPPPFVTQIAQ-SIESQLAEFRSYEG 89
           +I  K+ K   TW  S  DH     ++    +LK+PPP     ++ ++ +Q ++  +   
Sbjct: 334 KIYTKKRKKRLTWKASSDDHMAKQSSQVPYLELKVPPPLCCAYSEITVRAQTSQVLAIAP 155

Query: 90  QDM 92
           +D+
Sbjct: 154 RDI 146


>BP040833 
          Length = 490

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 16/52 (30%), Positives = 24/52 (45%)
 Frame = -2

Query: 79  SQLAEFRSYEGQDMYAGEKIIPIKLDLCVNHMLVKDQFLWDLNNFESDLEEL 130
           S L  FRSY+GQ  Y        K D+C+    ++  ++   N  E+ L  L
Sbjct: 249 SYLCSFRSYDGQRFYR-------KNDICIYENFIRKNWIGSRNFGENFLYNL 115


>TC16393 similar to UP|Q93YZ6 (Q93YZ6) AT4g00750/F15P23_1, partial (79%)
          Length = 584

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 28  LDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
           +D+ +  KR+ D   W+    DHE G   R  +
Sbjct: 216 VDVLLKVKRFADTMQWDTRIADHEKGPHQREKI 314


>BP075152 
          Length = 502

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 10/16 (62%), Positives = 13/16 (80%)
 Frame = -2

Query: 130 LARIFCKDMGIEDPEV 145
           +  IFC+DMGIED E+
Sbjct: 498 VCEIFCQDMGIEDLEL 451


>BP037555 
          Length = 549

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = -3

Query: 107 VNHMLVKDQFLWDLNNFESDLEELARIFC 135
           VN M VKD++L  + NF    + ++ IFC
Sbjct: 124 VN*MCVKDKYLVHILNFLDICKSISEIFC 38


>TC17071 similar to UP|Q9SLW5 (Q9SLW5) Protoporphyrinogen IX oxidase,
           partial (18%)
          Length = 542

 Score = 25.4 bits (54), Expect = 4.0
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +1

Query: 55  FARRTVKDLKLPPPFVTQIAQSIESQLAE 83
           F +   K  K+ P F TQ+   ++SQLA+
Sbjct: 106 FLKLLTKWKKISPDFSTQVTTEVDSQLAK 192


>TC13327 similar to UP|O48939 (O48939) Polyphosphoinositide binding protein
           Ssh1p, partial (19%)
          Length = 525

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 66  PPPFVTQIAQSIESQLAEFRSYEGQD 91
           PP     IA++IES+L +F    G D
Sbjct: 132 PPAEEANIAKTIESELHKFEKSHGND 209


>TC15457 similar to UP|Q9LV01 (Q9LV01) Gb|AAC14404.1, partial (21%)
          Length = 1147

 Score = 24.3 bits (51), Expect = 9.0
 Identities = 18/42 (42%), Positives = 23/42 (53%)
 Frame = -2

Query: 104 DLCVNHMLVKDQFLWDLNNFESDLEELARIFCKDMGIEDPEV 145
           DL  N  L+K   L  L  ++  L+ L  I CKDM +EDP V
Sbjct: 450 DLV*NQWLLKALQLL-LLPYDHPLKRLPYI-CKDMSLEDPTV 331


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,347,119
Number of Sequences: 28460
Number of extensions: 27125
Number of successful extensions: 133
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of query: 145
length of database: 4,897,600
effective HSP length: 82
effective length of query: 63
effective length of database: 2,563,880
effective search space: 161524440
effective search space used: 161524440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)