TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0253.9
         (677 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW720394                                                              305  2e-83
TC14975 homologue to UP|Q8LG37 (Q8LG37) AtPH1-like protein, part...    34  0.088
BP072343                                                               33  0.12
TC15770 similar to UP|ENPL_CATRO (P35016) Endoplasmin homolog pr...    31  0.57
BI417524                                                               30  1.7
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase  , part...    30  1.7
TC16198                                                                29  2.8
CB829562                                                               28  3.7
TC13235 similar to UP|Q9LQB6 (Q9LQB6) F4N2.1, partial (38%)            28  3.7
TC12505 similar to UP|BAD00698 (BAD00698) Sericin 1A, partial (5%)     28  4.8
TC17526 similar to UP|ADF_VITVI (Q8SAG3) Actin-depolymerizing fa...    28  4.8
TC19655                                                                28  6.3
TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain...    28  6.3
TC9194 similar to UP|Q9LYP1 (Q9LYP1) Membrane protein (AT5g07250...    27  8.3
TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomeras...    27  8.3

>AW720394 
          Length = 587

 Score =  305 bits (780), Expect = 2e-83
 Identities = 157/159 (98%), Positives = 157/159 (98%)
 Frame = +1

Query: 1   MEKNKIDETVAEQQQPLDPLSNYRGLSLFPSTSSALPLSVADDLDAIHNHLRSMALRSPA 60
           MEKNKIDETVAEQQQPLDPLSNYRGLSLFPSTSSALPLSVADDLDAIHNHLRSMALRSPA
Sbjct: 115 MEKNKIDETVAEQQQPLDPLSNYRGLSLFPSTSSALPLSVADDLDAIHNHLRSMALRSPA 294

Query: 61  KLVEQTKAILEENPGLFNSQDDERNDVVDVDVDVAEDGQDFPRKRRPGLGLKRARFSLKP 120
           KLVEQTKAILEENPGLFNSQDDERNDV  VDVDVAEDGQDFPRKRRPGLGLKRARFSLKP
Sbjct: 295 KLVEQTKAILEENPGLFNSQDDERNDV--VDVDVAEDGQDFPRKRRPGLGLKRARFSLKP 468

Query: 121 STSVSLESLLPNLDIENLKDPVEFFKAHERMENARREIQ 159
           STSVSLESLLPNLDIENLKDPVEFFKAHERMENARREIQ
Sbjct: 469 STSVSLESLLPNLDIENLKDPVEFFKAHERMENARREIQ 585


>TC14975 homologue to UP|Q8LG37 (Q8LG37) AtPH1-like protein, partial (86%)
          Length = 892

 Score = 33.9 bits (76), Expect = 0.088
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 308 RGSLSKPRKALSNIDNLLNRRKNKTPLRQDAGSPAEQLASPTPPRSPF-APLSSLLN 363
           + S SKP  A  +  N  N   +KTP      SP+   +SP+PP SP  AP +S  N
Sbjct: 201 KASTSKPGAAAGSFSNKENSSGSKTP--PSRASPSHAASSPSPPVSPSRAPKTSSTN 365


>BP072343 
          Length = 517

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 608 EQKRVKSRSQKDTKSKRLAKRQSLAAAGTSWTSGIRRSTRIRTRPLEYWKGERLVYGRIH 667
           E++R  +++++  K +R  +R+      +     +RRS R + R LE W+  ++   R+H
Sbjct: 69  EKRRGNAKAKQAWKGRRSKQRKRQPKQLSKHKRKLRRSLRRQRRKLELWRNRQMKSSRLH 248

Query: 668 QSK 670
           + K
Sbjct: 249 RKK 257


>TC15770 similar to UP|ENPL_CATRO (P35016) Endoplasmin homolog precursor
           (GRP94 homolog), partial (43%)
          Length = 1065

 Score = 31.2 bits (69), Expect = 0.57
 Identities = 16/61 (26%), Positives = 33/61 (53%)
 Frame = +3

Query: 33  SSALPLSVADDLDAIHNHLRSMALRSPAKLVEQTKAILEENPGLFNSQDDERNDVVDVDV 92
           S  LPL+V+ ++   H+ L+++  +   K ++  + I +E+P    S D E+ +    D+
Sbjct: 318 SDTLPLNVSREMLQAHSSLKTIKKKLIRKALDMIRRIADEDPD--ESTDKEKKEETSSDI 491

Query: 93  D 93
           D
Sbjct: 492 D 494


>BI417524 
          Length = 462

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 20/61 (32%), Positives = 27/61 (43%), Gaps = 2/61 (3%)
 Frame = +3

Query: 303 DLKSLRGSLSKPRKALSN--IDNLLNRRKNKTPLRQDAGSPAEQLASPTPPRSPFAPLSS 360
           D    RGS   PR+      +  +L+  +  T LR        Q  SP PP +P +P SS
Sbjct: 78  DEDETRGSSGNPRRLHQQRELGQVLHHSRFTTTLRMVRRMAPTQNPSPLPPPNPSSPSSS 257

Query: 361 L 361
           L
Sbjct: 258 L 260


>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase  , partial (42%)
          Length = 519

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 21/60 (35%), Positives = 33/60 (55%)
 Frame = +3

Query: 313 KPRKALSNIDNLLNRRKNKTPLRQDAGSPAEQLASPTPPRSPFAPLSSLLNHISRLKPSV 372
           +PR+A+     L  +R NK+PL +    P   L  P PPR+P +P  S  +H+ R +P +
Sbjct: 249 RPRRAVPPHQPLPQQR-NKSPLLRRLRRPLWPLP-PVPPRTPRSPGDSNPHHL-RTRPEI 419


>TC16198 
          Length = 572

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 28/101 (27%), Positives = 44/101 (42%), Gaps = 10/101 (9%)
 Frame = +2

Query: 276 LLQERLQIKPVVLEKVSVPDFPDNQPIDLKSLRGSLSKPRKALSNIDNL------LNRRK 329
           +LQ  L    + +  VSV   P   P    S R S +KP + L+   NL       +R K
Sbjct: 158 ILQSSLVEMAMAISSVSVALRPHFPPSPFHSRRYSFAKPLRCLATKQNLPETLEIESRPK 337

Query: 330 NKTPLRQDAGSPAEQLASPTP----PRSPFAPLSSLLNHIS 366
           ++T L   +  P    A+  P     RS FAP+  ++  ++
Sbjct: 338 SETVLHSFSPLPLLYAAALLPGGGAVRSVFAPVVEIVKTLN 460


>CB829562 
          Length = 530

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +1

Query: 406 PSNELNDHITKDAVAIGETNAVPDTLRNCASASENSKEDNSGKSSNKLDAPLIEDILAVS 465
           P+N+ +  +T++++    ++  PD      S SEN K D   K     D     +++++S
Sbjct: 88  PNNKESTEVTRESLIAISSSYSPDKNLESNSVSENKKSDGVAKPKCDQDDDFRSELISIS 267


>TC13235 similar to UP|Q9LQB6 (Q9LQB6) F4N2.1, partial (38%)
          Length = 467

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = +3

Query: 327 RRKNKTPLRQDAGSPAEQLASPTPPRSP 354
           RR+N+ P       P   ++SP PPR+P
Sbjct: 114 RRRNRKPSPAPPPPPGSPISSPKPPRNP 197


>TC12505 similar to UP|BAD00698 (BAD00698) Sericin 1A, partial (5%)
          Length = 569

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 21/78 (26%), Positives = 33/78 (41%), Gaps = 6/78 (7%)
 Frame = +2

Query: 575 VIQANSIDKRTTCTNEGSEQCLQEERDGSRAPVEQKRVKSRSQKDTKSKRLAKR------ 628
           V +A+S  K +T  +E S++      D S    E     S S   +     +        
Sbjct: 230 VSRASSTGKPSTTKHEKSDKL*PRVNDASCDGFENATTSSSSSSSSSRSSASSSLFLFGC 409

Query: 629 QSLAAAGTSWTSGIRRST 646
           + +AAAG++WTS    ST
Sbjct: 410 EEVAAAGSTWTSSSSSST 463


>TC17526 similar to UP|ADF_VITVI (Q8SAG3) Actin-depolymerizing factor (ADF),
           partial (71%)
          Length = 433

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 12/39 (30%), Positives = 18/39 (45%)
 Frame = -3

Query: 319 SNIDNLLNRRKNKTPLRQDAGSPAEQLASPTPPRSPFAP 357
           S   ++ N  + KTP  + +  P  Q + P PP S   P
Sbjct: 335 SQTQHIYNHSQAKTPRNRHSSQPGHQSSQPQPPFSSHQP 219


>TC19655 
          Length = 473

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 14/52 (26%), Positives = 24/52 (45%)
 Frame = -2

Query: 476 NSTSTSQMPMEDNSMEPEFDANVDRNEPHADMDVDNGGSGMGETVMDDTVAK 527
           NS S + +   D  + P    N   +E H D+  +NGG  + + + +   AK
Sbjct: 379 NSNSATAVASTDALVNPPKATNGSTDEKHVDLFTENGGVSVWDEINEALNAK 224


>TC8128 homologue to UP|TBA3_ELEIN (O22349) Tubulin alpha-3 chain (Alpha-3
           tubulin), complete
          Length = 1615

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 16/48 (33%), Positives = 24/48 (49%)
 Frame = +2

Query: 613 KSRSQKDTKSKRLAKRQSLAAAGTSWTSGIRRSTRIRTRPLEYWKGER 660
           +SR+ +  +S R     +L    T    G RR  ++R RPL  W+G R
Sbjct: 311 RSRTHRHRRSPRRHLPPTLPPRTTHLRQG-RRRQQLRQRPLHRWQGNR 451


>TC9194 similar to UP|Q9LYP1 (Q9LYP1) Membrane protein
           (AT5g07250/T28J14_190), partial (78%)
          Length = 1467

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 17/46 (36%), Positives = 21/46 (44%)
 Frame = +2

Query: 325 LNRRKNKTPLRQDAGSPAEQLASPTPPRSPFAPLSSLLNHISRLKP 370
           L ++ NK  L   A + A       PP  PF  LS  L +  RLKP
Sbjct: 47  LKKKNNKFKLLLQAYNEAVTNLRSLPPPFPFPFLSQFLKNSFRLKP 184


>TC7994 similar to UP|Q8RU73 (Q8RU73) Ribose-5-phosphate isomerase
           precursor  , partial (81%)
          Length = 1355

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
 Frame = +1

Query: 34  SALPLSVADDLDAIHNHLRS-MALRSPAKLVEQTKAILEENPGLFNSQDDERNDVVDVDV 92
           ++L LS    L + H++  S + LR+P  L  +T A  +    +  +QDD +    D  V
Sbjct: 259 ASLSLSSPPSLSSAHHNASSHLILRTPTSLKLRTSATPKPIRAITLTQDDLKRLAADKAV 438

Query: 93  DVAEDG 98
           D  + G
Sbjct: 439 DYVKSG 456


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.309    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,390,847
Number of Sequences: 28460
Number of extensions: 114707
Number of successful extensions: 633
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of query: 677
length of database: 4,897,600
effective HSP length: 96
effective length of query: 581
effective length of database: 2,165,440
effective search space: 1258120640
effective search space used: 1258120640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)