BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0253.10
(674 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP038017 184 5e-47
CN825057 124 4e-29
AV425218 122 2e-28
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 110 1e-24
CB827002 90 1e-18
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 82 4e-16
AV780484 59 3e-09
AV409041 49 3e-06
AV423237 46 2e-05
AV776853 40 0.001
TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired re... 34 0.067
TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcri... 31 0.74
TC7955 similar to UP|WR11_ARATH (Q9SV15) Probable WRKY transcrip... 31 0.74
TC12362 weakly similar to UP|UBF1_HUMAN (P17480) Nucleolar trans... 30 0.97
TC9067 similar to UP|WR15_ARATH (O22176) Probable WRKY transcrip... 30 1.7
TC14912 29 2.8
TC8297 similar to UP|Q40828 (Q40828) WRKY3, partial (27%) 29 2.8
TC8298 homologue to UP|Q9SXP4 (Q9SXP4) DNA-binding protein NtWRK... 29 2.8
AV426757 29 2.8
TC7956 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-bi... 28 4.8
>BP038017
Length = 570
Score = 184 bits (466), Expect = 5e-47
Identities = 81/153 (52%), Positives = 117/153 (75%)
Frame = +2
Query: 194 NRDCWNYIRNVRRKNLDVGDAQAVFDYCKRKQVENSNFFYAIQCDEDSRMVNLFWVDARS 253
N + Y+++ +++ L DAQ + +Y K+ Q +N F+YAIQ D+++RM+N+FW DARS
Sbjct: 113 NTTPFTYVKSSQKRTLG-RDAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARS 289
Query: 254 RLSYQLFGDVITFDTTYKTNKYSMPFAPFVGLNNHSQSILYGCALLQDESEASFVWLFKT 313
R +Y FGD + FDT Y+ N+Y +PFAPF G+N+H Q++L+GCALL DESE+SF WLF+T
Sbjct: 290 RSAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTWLFRT 469
Query: 314 WLQAMGGKKPISIITDQDLAMKAALAKVFPESR 346
WL AM + P+SI TDQD A++AA+A+VFPE+R
Sbjct: 470 WLSAMNDRPPVSITTDQDRAIQAAVAQVFPETR 568
>CN825057
Length = 721
Score = 124 bits (312), Expect = 4e-29
Identities = 75/242 (30%), Positives = 122/242 (49%), Gaps = 5/242 (2%)
Frame = +1
Query: 57 FYNSFDKKNGFGVRVRSSKPKRAVLVCCNEGQHKVKISRTEEIKDSTNQTKRKCSTIRSG 116
FY + K GF +++S+ + + K SR +S + R+ S ++
Sbjct: 10 FYQEYAKSMGFTTSIKNSRRSKKTKEFIDA---KFACSRYGVTPESDGGSNRRSSVKKTD 180
Query: 117 CEASLIVSRGTTKSKWMIKSFNNDHNHVMVSPKSVSYMRCHKKMSVAAKSLVEKFEEEGI 176
C+A + V R KW+I F +HNH ++ P + R H+ + +A K+ ++
Sbjct: 181 CKACMHVKR-KPDGKWIIHEFIKEHNHELL-PALAYHFRIHRNVKLAEKNNMDILHAVSE 354
Query: 177 PTGKVAAIFNDGDSTFTN-----RDCWNYIRNVRRKNLDVGDAQAVFDYCKRKQVENSNF 231
T K+ + N D + + + +D GDAQ + +Y K Q EN NF
Sbjct: 355 RTRKMYVEMSRQSGGCLNIESLVGDLNDQFKKGQYLAMDEGDAQVMLEYFKHIQKENPNF 534
Query: 232 FYAIQCDEDSRMVNLFWVDARSRLSYQLFGDVITFDTTYKTNKYSMPFAPFVGLNNHSQS 291
FY+I +E+ R+ N+FW+DA+S Y F DV++FDT+Y + +PFAPFVG+N+H Q
Sbjct: 535 FYSIDLNEEQRLRNIFWIDAKSINDYLSFNDVVSFDTSYIKSNEKLPFAPFVGVNHHCQP 714
Query: 292 IL 293
IL
Sbjct: 715 IL 720
>AV425218
Length = 419
Score = 122 bits (305), Expect = 2e-28
Identities = 59/135 (43%), Positives = 83/135 (60%)
Frame = +2
Query: 278 PFAPFVGLNNHSQSILYGCALLQDESEASFVWLFKTWLQAMGGKKPISIITDQDLAMKAA 337
P A VG+N+H QS+L+GCALL E SFVWLF++ L M G P IITD AMK A
Sbjct: 5 PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKKA 184
Query: 338 LAKVFPESRHRLCLWHIIKKFPEKLAHIYHKQSIFKRDMKRCIRGSHSIQSFEEEWMRIM 397
+ V P +RHR CL +I+KK P+KL +SI + ++ + + I FE W +I+
Sbjct: 185 IETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESI-RHHLQNVVYDAVVIDEFERNWKKIV 361
Query: 398 VEYNLKENEWLQGLY 412
++ L++NEWL L+
Sbjct: 362 EDFGLEDNEWLNELF 406
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
{Oryza sativa (japonica cultivar-group);}, partial (8%)
Length = 488
Score = 110 bits (274), Expect = 1e-24
Identities = 48/113 (42%), Positives = 80/113 (70%)
Frame = +1
Query: 205 RRKNLDVGDAQAVFDYCKRKQVENSNFFYAIQCDEDSRMVNLFWVDARSRLSYQLFGDVI 264
R+++L G+A + Y +RK VENS F++A Q D++ ++ N+FWVDAR + Y FGD++
Sbjct: 19 RQRSLLHGEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMV 198
Query: 265 TFDTTYKTNKYSMPFAPFVGLNNHSQSILYGCALLQDESEASFVWLFKTWLQA 317
+ D+TY T+ + P A F G N+H +++++G ALL DE+ S+ WLF+++L+A
Sbjct: 199 SLDSTYCTHSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFLEA 357
>CB827002
Length = 534
Score = 90.1 bits (222), Expect = 1e-18
Identities = 45/104 (43%), Positives = 70/104 (67%)
Frame = +1
Query: 403 KENEWLQGLYKIRESWIPIYNRSTFFAGMNTTQRSESINAFFDSFVDASTTLQEFVLKFE 462
+++EWL LY P++ R TFFA M+ TQRS+S+N++FD +V+AST L +F +E
Sbjct: 28 QDHEWLS-LYSSCRQGAPVHLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYE 204
Query: 463 KAVESRLEAERKENYESRHKSRILSTGSKLEEHAGHLYTPEIFL 506
KA+ESR E E + +Y++ + +L T S +E+ A LYT +IF+
Sbjct: 205 KALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFM 336
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 81.6 bits (200), Expect = 4e-16
Identities = 39/92 (42%), Positives = 51/92 (55%)
Frame = +2
Query: 192 FTNRDCWNYIRNVRRKNLDVGDAQAVFDYCKRKQVENSNFFYAIQCDEDSRMVNLFWVDA 251
FT D N+I +R+ + GDA A Y + K + FFY D + NLFW D
Sbjct: 86 FTKTDLSNHIAKPKRERIQNGDAAAALSYLEGKADNDPMFFYKFTKTGDESLENLFWCDG 265
Query: 252 RSRLSYQLFGDVITFDTTYKTNKYSMPFAPFV 283
SR+ Y +FGDVI FD+TYK NKY+ P F+
Sbjct: 266 VSRMDYNVFGDVIAFDSTYKKNKYNKPLVVFL 361
>AV780484
Length = 529
Score = 58.9 bits (141), Expect = 3e-09
Identities = 27/67 (40%), Positives = 39/67 (57%)
Frame = -1
Query: 215 QAVFDYCKRKQVENSNFFYAIQCDEDSRMVNLFWVDARSRLSYQLFGDVITFDTTYKTNK 274
+A+ +Y Q EN NFFYAI D + + ++FWVD + RL Y+ ++ T Y NK
Sbjct: 205 KAMTEYFVSTQGENPNFFYAIDLDLNRHLTSVFWVDIKGRLDYETSMMLVLIHTHYLKNK 26
Query: 275 YSMPFAP 281
Y +PF P
Sbjct: 25 YKIPFFP 5
>AV409041
Length = 349
Score = 48.9 bits (115), Expect = 3e-06
Identities = 31/106 (29%), Positives = 49/106 (45%)
Frame = +3
Query: 41 KPEIGMEFESIEKVREFYNSFDKKNGFGVRVRSSKPKRAVLVCCNEGQHKVKISRTEEIK 100
+P +EFES E FY + K GFG SS+ RA + ++ ++
Sbjct: 30 EPHYDIEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSD 209
Query: 101 DSTNQTKRKCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNHVMV 146
D+ N + + GC+AS+ V R KW + SF +HNH ++
Sbjct: 210 DAINPR----PSPKIGCKASMHVKR-RQDGKWYVYSFVKEHNHELL 332
>AV423237
Length = 310
Score = 46.2 bits (108), Expect = 2e-05
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Frame = +2
Query: 250 DARSRLSYQLFGDVITFDTTYKTNKYSMPFAPFVGLNNHSQSILYGCALLQDESEASFVW 309
DA SR++Y FGD + FDTT + S+ G ++ + +++ AL+ +ESE+SFV
Sbjct: 17 DATSRMNYSYFGDAVIFDTTIDNHIESI--CSSWG*SSWATCVIWLVALIANESESSFV- 187
Query: 310 LFKTWLQAMGGKKPI----SIITDQDLAMKAALAKVFPES 345
WL +G + SI TD D + K L VFP +
Sbjct: 188 ----WLSGLGSMPCLDATCSITTDLDHSYK-LLWLVFPSN 292
>AV776853
Length = 625
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/128 (25%), Positives = 54/128 (41%), Gaps = 7/128 (5%)
Frame = +1
Query: 46 MEFESIEKVREFYNSFDKKNGFGVRVRS------SKPKRAVLVCCNEG-QHKVKISRTEE 98
++F S E+ +FY ++ K GF VR VC +G + K +RT+
Sbjct: 238 LDFGSEEEAYQFYQAYAKYQGFIVRKDDIGRDYHGNVNMRQFVCNRQGLRSKKHYNRTDR 417
Query: 99 IKDSTNQTKRKCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNHVMVSPKSVSYMRCHK 158
+D T + C A L V KW + SF HNH + + V ++ ++
Sbjct: 418 KRDHKPVT-------HTNCLAKLRVHLDYKIGKWKVVSFEECHNHELTPARFVHFIPPYR 576
Query: 159 KMSVAAKS 166
M+ A K+
Sbjct: 577 VMNDADKA 600
>TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein, mutator-like transposase-like protein,
phytochrome A signaling protein-like, partial (3%)
Length = 666
Score = 34.3 bits (77), Expect = 0.067
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +3
Query: 252 RSRLSYQLFGDVITFDTTYKTNKYSMPFA 280
R + Y+ FGDV++ DTTY TN P A
Sbjct: 3 RMIMDYEYFGDVVSLDTTYSTNNAYRPLA 89
>TC15775 similar to UP|WR17_ARATH (Q9SJA8) Probable WRKY transcription
factor 17 (WRKY DNA-binding protein 17), partial (53%)
Length = 1284
Score = 30.8 bits (68), Expect = 0.74
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 109 KCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNH 143
KCST+R GC A V R T +I ++ ++H+H
Sbjct: 810 KCSTVR-GCPARKHVERATDDPAMLIVTYEDEHDH 911
>TC7955 similar to UP|WR11_ARATH (Q9SV15) Probable WRKY transcription
factor 11 (WRKY DNA-binding protein 11), partial (27%)
Length = 579
Score = 30.8 bits (68), Expect = 0.74
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +3
Query: 109 KCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNHVM 145
KCST+R GC A V R T +I ++ +H H +
Sbjct: 162 KCSTVR-GCPARKHVERATDDPTMLIVTYEGEHRHAL 269
>TC12362 weakly similar to UP|UBF1_HUMAN (P17480) Nucleolar transcription
factor 1 (Upstream binding factor 1) (UBF-1)
(Autoantigen NOR-90), partial (3%)
Length = 493
Score = 30.4 bits (67), Expect = 0.97
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 580 RELFRFLVILLWNDGLRMLTEVLKTLIMIMIWVKNLIH-----*RF*EGCMCN 627
R L R + + L + + +++K + + +IW+KNLIH R * C+CN
Sbjct: 64 RNLLRRMRMTLTLTSMMKILKMMKMICLSIIWLKNLIHPHILPRRR*LNCICN 222
>TC9067 similar to UP|WR15_ARATH (O22176) Probable WRKY transcription
factor 15 (WRKY DNA-binding protein 15), partial (31%)
Length = 660
Score = 29.6 bits (65), Expect = 1.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 109 KCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNHVM 145
KCS++R GC A V R + ++ ++ +HNH +
Sbjct: 195 KCSSVR-GCPARKHVERALDDAAMLVVTYEGEHNHAL 302
>TC14912
Length = 657
Score = 28.9 bits (63), Expect = 2.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 103 TNQTKRKCSTIRSGCEASLIVSRGTTKSKW-MIKSFNNDHNHVM 145
T TKRK + +R GC+A+L + + IKS NN +H++
Sbjct: 288 TT*TKRKKNYVRIGCDAALASRISSDDGHFKQIKSPNNQFDHIL 419
>TC8297 similar to UP|Q40828 (Q40828) WRKY3, partial (27%)
Length = 617
Score = 28.9 bits (63), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (49%)
Frame = +1
Query: 109 KCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNHVMVSPKSVSYM 154
KCS+ GC A V R +I ++ +H H++ + +V +M
Sbjct: 241 KCSS-EKGCPARKHVERAQDDPNMLIVTYEGEHRHLITTTAAVGFM 375
>TC8298 homologue to UP|Q9SXP4 (Q9SXP4) DNA-binding protein NtWRKY3,
partial (16%)
Length = 514
Score = 28.9 bits (63), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (49%)
Frame = +3
Query: 109 KCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNHVMVSPKSVSYM 154
KCS+ GC A V R +I ++ +H H++ + +V +M
Sbjct: 171 KCSS-EKGCPARKHVERAQDDPNMLIVTYEGEHRHLITTTAAVGFM 305
>AV426757
Length = 415
Score = 28.9 bits (63), Expect = 2.8
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 336 AALA--KVFPESRHRLCLWHIIKKFPEKLAHIYHKQSIFKR-DMKRCIRGSHSIQS 388
AALA K+F ++ +KK E+L HIYH+QS+ K + HS+QS
Sbjct: 244 AALAQDKIFKDAHQ-----DALKKEIERLRHIYHQQSLQKMGNNNNSNNNGHSLQS 396
>TC7956 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-binding
protein {Arabidopsis thaliana;} , partial (45%)
Length = 1257
Score = 28.1 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 109 KCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNH 143
KCST+R GC A V R +I ++ +H H
Sbjct: 723 KCSTVR-GCPARKHVERAQDDPNMLIVTYEGEHRH 824
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.142 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,458,330
Number of Sequences: 28460
Number of extensions: 150430
Number of successful extensions: 1158
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of query: 674
length of database: 4,897,600
effective HSP length: 96
effective length of query: 578
effective length of database: 2,165,440
effective search space: 1251624320
effective search space used: 1251624320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0253.10