BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252c.1
(325 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ... 52 1e-07
TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, ... 35 0.017
AV421607 34 0.038
AV420911 33 0.066
TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 33 0.066
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 33 0.086
AV773507 32 0.15
TC17929 31 0.33
TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, part... 31 0.33
TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, parti... 28 2.1
BP039068 27 3.6
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 27 4.7
TC14120 similar to UP|Q9P1T7 (Q9P1T7) HIC protein isoform p40, p... 27 4.7
BP065763 27 4.7
BI418821 27 6.1
TC12308 similar to UP|Q9ZU41 (Q9ZU41) Predicted by genscan and g... 27 6.1
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 26 8.0
BP079571 26 8.0
>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
[imported] - Agrobacterium tumefaciens
(strain C58, Dupont) {Agrobacterium tumefaciens;},
partial (6%)
Length = 561
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/94 (31%), Positives = 49/94 (51%), Gaps = 5/94 (5%)
Frame = -2
Query: 234 KATEVELMKNRRMDRA-----GTGGPMRTSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYR 288
KA +E + N R A G+GGP R++ + + K +KKP+QRP G + G Y
Sbjct: 560 KAKSIEAIDNLRSRPAFRPNQGSGGPNRSAPGRFD-RNKSFQKKPFQRPQNRGTSSG-YS 387
Query: 289 PTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCP 322
+ +Q+ + EI C +C + GH++ +CP
Sbjct: 386 HSFGNFVPRPTQSDTSEIVCHRCSKKGHFANRCP 285
>TC17853 similar to UP|Q42412 (Q42412) RNA-binding protein RZ-1, partial
(58%)
Length = 881
Score = 35.0 bits (79), Expect = 0.017
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 296 GAGSQAGSREITCFKCGEIGHYSTKCP 322
G G GS CFKCG+ GH++ +CP
Sbjct: 383 GYGGSRGSNGGECFKCGKPGHFARECP 463
>AV421607
Length = 245
Score = 33.9 bits (76), Expect = 0.038
Identities = 15/28 (53%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
Frame = +3
Query: 296 GAGSQAGSREIT-CFKCGEIGHYSTKCP 322
G GS +GS T C+KCG GH+S CP
Sbjct: 15 GPGSGSGSGTATGCYKCGRPGHWSRDCP 98
>AV420911
Length = 418
Score = 33.1 bits (74), Expect = 0.066
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = +2
Query: 296 GAGSQAGSREITCFKCGEIGHYSTKC 321
G G G ++ C++CGE GH++ +C
Sbjct: 338 GGGRGRGGEDLKCYECGEPGHFAREC 415
>TC18003 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (42%)
Length = 587
Score = 33.1 bits (74), Expect = 0.066
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = +1
Query: 296 GAGSQAGSREITCFKCGEIGHYSTKC 321
G G G ++ C++CGE GH++ +C
Sbjct: 130 GGGRGRGGEDLKCYECGEPGHFAREC 207
>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (89%)
Length = 912
Score = 32.7 bits (73), Expect = 0.086
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 295 GGAGSQAGSREITCFKCGEIGHYSTKC 321
G +G G ++ C++CGE GH++ +C
Sbjct: 340 GRSGGGGGGSDMKCYECGEPGHFAREC 420
>AV773507
Length = 496
Score = 32.0 bits (71), Expect = 0.15
Identities = 15/43 (34%), Positives = 22/43 (50%)
Frame = +2
Query: 280 EGFTPGLYRPTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCP 322
+G+ G Y + GAG + G + CF+CG GH + CP
Sbjct: 272 QGYRGGGYSSGGRGSYGAGDRVGQDD--CFECGRPGHRARDCP 394
>TC17929
Length = 791
Score = 30.8 bits (68), Expect = 0.33
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 307 TCFKCGEIGHYSTKCPK 323
TC++CGE GH CPK
Sbjct: 59 TCYRCGESGHKMRNCPK 109
>TC9521 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (56%)
Length = 598
Score = 30.8 bits (68), Expect = 0.33
Identities = 23/77 (29%), Positives = 29/77 (36%)
Frame = +1
Query: 245 RMDRAGTGGPMRTSSRSYQGKGKLQRKKPYQRPTGEGFTPGLYRPTIAAAGGAGSQAGSR 304
R R G GG R R Y G+G P G G + I +AG
Sbjct: 310 RGSREGGGG--RDRDREYMGRGP---------PPGSG---RCFNCGIDGHWARDCKAGDW 447
Query: 305 EITCFKCGEIGHYSTKC 321
+ C++CGE GH C
Sbjct: 448 KNKCYRCGERGHIEKNC 498
>TC11885 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (26%)
Length = 555
Score = 28.1 bits (61), Expect = 2.1
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Frame = +2
Query: 243 NRRMDRAGTGGPMRTSSRSYQGKGKLQRKKPYQRPTGEGFT----------PGLYR---P 289
+R R+ + PM RS + R PY+R + GF+ PG + P
Sbjct: 218 SRSRSRSRSRSPMDRKIRSDRFS---YRDAPYRRDSRRGFSRDNLCKNCKRPGHFARECP 388
Query: 290 TIAAAGGAG------SQAGSREITCFKCGEIGHYSTKCP 322
+A G S+ ++ + C+ C E GH ++ CP
Sbjct: 389 NVAICHNCGLPGHIASECTTKSL-CWNCKEPGHMASSCP 502
>BP039068
Length = 467
Score = 27.3 bits (59), Expect = 3.6
Identities = 12/39 (30%), Positives = 15/39 (37%)
Frame = +3
Query: 284 PGLYRPTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCP 322
P R A+ + R+ C C E GH S CP
Sbjct: 240 PARARGPTASTSSNVNHNNPRQTVCMNCQETGHASNDCP 356
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 286 LYRPTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCPKGK 325
L RP IAAAGG ++ G REI GE G P G+
Sbjct: 413 LLRPRIAAAGGEVAE-GLREIEKVLVGERGSVRFVAPGGE 297
>TC14120 similar to UP|Q9P1T7 (Q9P1T7) HIC protein isoform p40, partial (7%)
Length = 588
Score = 26.9 bits (58), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 42 NDNAQRRAAEDARELHLRQREASLDQNRGLNNFIRQNPPK 81
N N +R A AR + + +S D+N+ L+ R PP+
Sbjct: 334 NKNDERGATNGARSVSGEEETSSNDENKDLHRQGRSRPPE 215
>BP065763
Length = 537
Score = 26.9 bits (58), Expect = 4.7
Identities = 9/22 (40%), Positives = 13/22 (58%)
Frame = -1
Query: 304 REITCFKCGEIGHYSTKCPKGK 325
+E C+ C + GH+ CPK K
Sbjct: 393 KEHVCYFCKKAGHFKKYCPKRK 328
>BI418821
Length = 614
Score = 26.6 bits (57), Expect = 6.1
Identities = 16/54 (29%), Positives = 20/54 (36%)
Frame = +2
Query: 268 LQRKKPYQRPTGEGFTPGLYRPTIAAAGGAGSQAGSREITCFKCGEIGHYSTKC 321
LQ + P G G G R GG G C+ CG+ GH + C
Sbjct: 293 LQPTRKDSAPRGFGGWRGGERRNGGGGGGGGGG-------CYNCGDTGHLARDC 433
>TC12308 similar to UP|Q9ZU41 (Q9ZU41) Predicted by genscan and genefinder
(At2g01260), partial (57%)
Length = 895
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/39 (30%), Positives = 20/39 (50%)
Frame = +3
Query: 179 PEYAAKLESLAKHFRFFRDQVDEPYMCKRFVRGLRADIE 217
P +L +L + + V Y+ KR RG+R+D+E
Sbjct: 27 PPPVKRLSNLEQFLQAITPSVPAQYLPKRTTRGIRSDVE 143
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 26.2 bits (56), Expect = 8.0
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +2
Query: 252 GGPMRTSSRSYQGKGKLQRKKPYQRPTGEG--FTPGLYRPTIAAAGGAGSQAGSREITCF 309
GGP +R Y G+G P G G F GL +AG + C+
Sbjct: 311 GGPR--GNREYLGRGP---------PPGSGRCFNCGL-----DGHWARDCKAGDWKNKCY 442
Query: 310 KCGEIGHYSTKC 321
+CG+ GH C
Sbjct: 443 RCGDRGHVERNC 478
>BP079571
Length = 414
Score = 26.2 bits (56), Expect = 8.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 289 PTIAAAGGAGSQAGSREITCFKCGEIGHYSTKCPKG 324
P+ GG G CF+ GE+GH + C G
Sbjct: 387 PSNGGVGGGG---------CFRFGEVGHLARDCDGG 307
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,729,078
Number of Sequences: 28460
Number of extensions: 50931
Number of successful extensions: 275
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 325
length of database: 4,897,600
effective HSP length: 90
effective length of query: 235
effective length of database: 2,336,200
effective search space: 549007000
effective search space used: 549007000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0252c.1