TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0252b.3
         (889 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV780357                                                              110  1e-24
TC19606 UP|YCF4_LOTJA (Q9BBR9) Photosystem I assembly protein yc...    33  0.26
BP083456                                                               29  3.8
TC7971 homologue to PIR|C86216|C86216 protein T23G18.6 [imported...    29  3.8
TC14266 homologue to PIR|C86216|C86216 protein T23G18.6 [importe...    28  4.9
TC14460                                                                28  8.4

>AV780357 
          Length = 613

 Score =  110 bits (275), Expect = 1e-24
 Identities = 52/54 (96%), Positives = 52/54 (96%)
 Frame = +2

Query: 181 VILHLYFKRRLEELSIIMDVEFHDDTSQNKDSMDLDEKGKICNNVGDMDVDDEC 234
           VILHLY KRRLEELSIIMDVEFHDDTSQNKDSMDLDEKGKIC NVGDMDVDDEC
Sbjct: 452 VILHLYLKRRLEELSIIMDVEFHDDTSQNKDSMDLDEKGKICKNVGDMDVDDEC 613


>TC19606 UP|YCF4_LOTJA (Q9BBR9) Photosystem I assembly protein ycf4,
           complete
          Length = 603

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 486 WINASRWQPDPVEADPLKGSRNQRKVDILGMIVGIIGSKDQLVHEYRTMLAEKLLNKSDY 545
           WI+   WQ + V  D + G RN R  D     + ++GS   L+    + L +  L+    
Sbjct: 7   WISEDTWQSEEVRVDFVTGCRNPR--DFFWAFITLLGSVGFLLVAASSYLHKNFLSFISS 180

Query: 546 DIDSEI 551
           + DSE+
Sbjct: 181 EFDSEL 198


>BP083456 
          Length = 390

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 487 INASRWQPDPVEADPLKGSRNQRKVDI 513
           I    WQP PV A P+KG+ +  K  I
Sbjct: 256 IGLDSWQPSPVNAFPIKGNCSHEKAAI 336


>TC7971 homologue to PIR|C86216|C86216 protein T23G18.6 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (98%)
          Length = 1662

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 2/74 (2%)
 Frame = +3

Query: 284 YNVAGDDFRGSILQSI--QRWIQAVPLQFLHALLVYIGDSVSYESTSSGLKSPLAPQPSS 341
           Y V  +D    I  SI  QRW  A   Q +  L+   G   + E T     + + P+   
Sbjct: 528 YYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENNMEFTIVRPFNWIGPR-MD 704

Query: 342 FCSGIDTPSEGLVR 355
           F  GID PSEG+ R
Sbjct: 705 FIPGIDGPSEGVPR 746


>TC14266 homologue to PIR|C86216|C86216 protein T23G18.6 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, complete
          Length = 1607

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 25/74 (33%), Positives = 32/74 (42%), Gaps = 2/74 (2%)
 Frame = +1

Query: 284 YNVAGDDFRGSILQSI--QRWIQAVPLQFLHALLVYIGDSVSYESTSSGLKSPLAPQPSS 341
           Y V  +D    I  SI  QRW  A   Q +  L+   G     E T     + + P+   
Sbjct: 511 YYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGMEFTIVRPFNWIGPR-MD 687

Query: 342 FCSGIDTPSEGLVR 355
           F  GID PSEG+ R
Sbjct: 688 FIPGIDGPSEGVPR 729


>TC14460 
          Length = 1520

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (54%)
 Frame = -1

Query: 487 INASRWQPDPVEADPLKGSRNQRKVDI 513
           I    WQP PV + P+KG+ +  K  I
Sbjct: 875 IGLDSWQPSPVNSFPIKGNCSHEKAAI 795


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,397,058
Number of Sequences: 28460
Number of extensions: 189281
Number of successful extensions: 1039
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of query: 889
length of database: 4,897,600
effective HSP length: 98
effective length of query: 791
effective length of database: 2,108,520
effective search space: 1667839320
effective search space used: 1667839320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)