TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0252a.4
         (153 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10984                                                               119  2e-28
AV776382                                                               29  0.31
TC9835 similar to AAQ56831 (AAQ56831) At3g03960, partial (67%)         27  1.2
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar...    27  2.0
TC12477                                                                27  2.0
TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%)        26  2.7
TC18729                                                                26  2.7
BP055567                                                               25  4.5
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    25  4.5
TC14323 homologue to UP|O22124 (O22124) Proton pyrophosphatase ,...    25  7.7
TC9732                                                                 25  7.7
TC13999 similar to UP|Q8H0G9 (Q8H0G9) MCM protein-like protein, ...    25  7.7
TC9131 weakly similar to UP|O80986 (O80986) At2g26110 protein, p...    25  7.7
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr...    25  7.7
AV771465                                                               25  7.7

>TC10984 
          Length = 649

 Score =  119 bits (298), Expect = 2e-28
 Identities = 55/62 (88%), Positives = 58/62 (92%)
 Frame = +3

Query: 92  FPFDPCLSKKSESYIRPHFVRWSRVRTTYDSDDDEDGSEMSHDDFVDRNAKELDMMVSVQ 151
           FP DPCL KKSESYI PHFVRWSRV+TTYDSDDDEDGSEMS DDFVDRNA+ELDMMVSV+
Sbjct: 3   FPLDPCLLKKSESYIXPHFVRWSRVKTTYDSDDDEDGSEMSDDDFVDRNAEELDMMVSVE 182

Query: 152 GL 153
           GL
Sbjct: 183 GL 188


>AV776382 
          Length = 462

 Score = 29.3 bits (64), Expect = 0.31
 Identities = 11/24 (45%), Positives = 16/24 (65%)
 Frame = +3

Query: 112 RWSRVRTTYDSDDDEDGSEMSHDD 135
           +WS ++   DSD++E G   SHDD
Sbjct: 234 KWSIIQDDADSDEEEAGGGTSHDD 305


>TC9835 similar to AAQ56831 (AAQ56831) At3g03960, partial (67%)
          Length = 1126

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 6   LCFRMRSLVDIPRLKLQLL 24
           +C R RS VDIP+L L+LL
Sbjct: 311 VCTRARSSVDIPKLSLRLL 367


>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
           thaliana;}, partial (44%)
          Length = 700

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 12/28 (42%), Positives = 17/28 (59%)
 Frame = +2

Query: 114 SRVRTTYDSDDDEDGSEMSHDDFVDRNA 141
           SR R + D DDD+DG +   D+  D +A
Sbjct: 5   SRTRMSGDEDDDDDGEDDDGDEDDDDDA 88


>TC12477 
          Length = 452

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 8   FRMRSLVDIPRLKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLFM 61
           FR R     P+ +L++ N+P   +   +L PLK+ L   ++  LR   A QL +
Sbjct: 247 FRPRMKFLNPQWRLKV-NLPFLLVTLLQLKPLKLLLQVKIQSLLRNLVAEQLLL 405


>TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%)
          Length = 444

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 20/78 (25%), Positives = 33/78 (41%)
 Frame = +3

Query: 37  SPLKVCLPTVVEEFLRQAKAAQLFMSSSETFVFNDLLESDDLSRSFGGIDRLDMFFPFDP 96
           +PL    P ++ + +       L +S S  F+F  L +   ++   GGI          P
Sbjct: 243 NPLDFAFPLLIVQTI-----IVLVLSRSLAFLFKPLRQPKVIAEIVGGI-------LLGP 386

Query: 97  CLSKKSESYIRPHFVRWS 114
               +SESY+   F +WS
Sbjct: 387 SALGRSESYLHRIFPKWS 440


>TC18729 
          Length = 554

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 97  CLSKK-SESYIRPHFVRWSRVRTTYDSDDDEDGS 129
           C +K+ S +Y+ PH     RVR +Y  DDD+ GS
Sbjct: 101 CRAKETSAAYLLPH-----RVRYSYVGDDDQIGS 187


>BP055567 
          Length = 491

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 27  PMEPIWKHKLSP 38
           P++P+WK KLSP
Sbjct: 173 PIKPLWKRKLSP 138


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 14/32 (43%), Positives = 17/32 (52%)
 Frame = +3

Query: 121 DSDDDEDGSEMSHDDFVDRNAKELDMMVSVQG 152
           D DDD+DG E   DD  D   +E    V V+G
Sbjct: 309 DDDDDDDGEE-EEDDDDDDEEEEGSEEVEVEG 401


>TC14323 homologue to UP|O22124 (O22124) Proton pyrophosphatase , partial
            (74%)
          Length = 2664

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 17/46 (36%), Positives = 23/46 (49%)
 Frame = +2

Query: 19   LKLQLLNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLFMSSS 64
            L+L LLNMP   + K ++    + L T +E  LR      L  SSS
Sbjct: 1505 LRLVLLNMPEALVLKAQIVTKLLLLVTPLETLLRIHLVPHLTSSSS 1642


>TC9732 
          Length = 566

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 11/34 (32%), Positives = 16/34 (46%)
 Frame = -1

Query: 77  DLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHF 110
           DLSR    +  L   F  +PCL ++  +    HF
Sbjct: 197 DLSRRLNSLSTLTSSFRHEPCLQEQQLTLACAHF 96


>TC13999 similar to UP|Q8H0G9 (Q8H0G9) MCM protein-like protein, partial
           (5%)
          Length = 429

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (62%), Gaps = 2/30 (6%)
 Frame = +1

Query: 123 DDDEDGSEMSHDDFVD--RNAKELDMMVSV 150
           +++EDG ++ +D+F+D  R   E D   SV
Sbjct: 220 EEEEDGEDLYNDNFMDDYRRMDEADQFESV 309


>TC9131 weakly similar to UP|O80986 (O80986) At2g26110 protein, partial
           (21%)
          Length = 781

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 8/23 (34%), Positives = 16/23 (68%)
 Frame = +1

Query: 124 DDEDGSEMSHDDFVDRNAKELDM 146
           DD+DG +   DDF+++  ++L +
Sbjct: 250 DDDDGVDAKADDFINKFKQQLQL 318


>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
           1-like protein 3, partial (81%)
          Length = 1298

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
 Frame = +2

Query: 76  DDLSRSFGGIDRLDMFFPFDPCLSKKSESYIRPHFVRWSRVRTTYDS-----DDDEDGSE 130
           DD       ++ L      D  +       I PH V W              +DDEDG E
Sbjct: 620 DDDDIDDDAVEELQNLMEHDYDIGSTIRDKIIPHAVSWFTGEAEQSDFEDIEEDDEDGDE 799

Query: 131 MSHDDFVDRNAKELD 145
              +D  D   +E D
Sbjct: 800 DEDEDDDDDEEEEDD 844


>AV771465 
          Length = 309

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 26 MPMEPIWKHKLSPL 39
          +P  P+W+ KLSP+
Sbjct: 37 LPFRPLWQRKLSPI 78


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,558,725
Number of Sequences: 28460
Number of extensions: 31526
Number of successful extensions: 261
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of query: 153
length of database: 4,897,600
effective HSP length: 82
effective length of query: 71
effective length of database: 2,563,880
effective search space: 182035480
effective search space used: 182035480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)