BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0250.10
(1065 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF177539 46 3e-05
TC12848 GB|AAA37921.1|553942|MUSIGF2RA insulin-like growth facto... 40 0.002
BP054883 37 0.021
TC13834 homologue to UP|Q948R9 (Q948R9) RPS6-like protein (AT3g1... 30 2.6
AV771981 29 3.4
AV426390 28 5.8
AV781219 28 7.6
TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Ara... 28 7.6
TC16628 weakly similar to GB|AAH44360.1|27882485|BC044360 C21orf... 28 7.6
AW719410 28 9.9
TC9671 homologue to UP|Q9LFP7 (Q9LFP7) Serine/threonine specific... 28 9.9
>BF177539
Length = 327
Score = 46.2 bits (108), Expect = 3e-05
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +3
Query: 37 ILCPCAKCGNCCWEKRNVIYNHLICTGFLEGYNVWIHHGE 76
ILCPC C W R+V+Y HLI F Y W HGE
Sbjct: 42 ILCPCGLCNFRKWLTRDVVYEHLIIKQFPRNYTFWFDHGE 161
>TC12848 GB|AAA37921.1|553942|MUSIGF2RA insulin-like growth factor 2
receptor {Mus musculus;}, partial (23%)
Length = 664
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 37 ILCPCAKCGNCCWEKRNVIYNHLICTGFLEGYNVWIH 73
I+CPC KCG R+ + +HL+C F +GY W H
Sbjct: 345 IICPCDKCGFNKRFTRDEVLDHLLCKPFPDGYTFW*H 455
>BP054883
Length = 545
Score = 36.6 bits (83), Expect = 0.021
Identities = 22/47 (46%), Positives = 28/47 (58%)
Frame = -1
Query: 742 FVIEIIQKVQLLRGIWLKKH*LFAQDTCIKVYRQG*IERVETTITMV 788
FV +++QK LLR WLK * AQD + V RQG IE T I ++
Sbjct: 545 FVTKVVQKFLLLRRTWLKNV*HCAQDIYMVV*RQGLIE*EGTVIDLI 405
Score = 32.3 bits (72), Expect = 0.40
Identities = 24/54 (44%), Positives = 31/54 (56%)
Frame = -3
Query: 878 *KTKVG*SQGSKSRF**VV*NSSRGR*CTIPTSRIF*RTKYCGKEVLRLPH*WI 931
*K +V *S+ ++RF *+V N S *CT P F*R KY K + L *W+
Sbjct: 174 *KKEVE*SKEPRTRFH*MVQNPSFNG*CTWPP*GSF*RAKYNCKTLFWLRD*WL 13
>TC13834 homologue to UP|Q948R9 (Q948R9) RPS6-like protein
(AT3g17170/K14A17_29), partial (13%)
Length = 517
Score = 29.6 bits (65), Expect = 2.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 82 DEEMEEDYHDDIDGLLYETFKYVAGAEPEGPNEDARKFYNLIDESQKEL 130
DEE++EDY DD DG E + ED + +ID+ Q ++
Sbjct: 163 DEELDEDYDDDWDG------------EEDADGEDGDAEFIVIDDDQDDV 273
>AV771981
Length = 558
Score = 29.3 bits (64), Expect = 3.4
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 287 PVDGQAWQDFDGLHLDFASDPRNVRLGLASDGFNPFRTMSIS-HSTWPV 334
P G AW LHL S P +V LG D + P ++ + H W V
Sbjct: 203 PEAGGAWPWIGHLHLLGGSQPPHVSLGNMVDKYGPIFSLRVGVHRAWVV 349
>AV426390
Length = 399
Score = 28.5 bits (62), Expect = 5.8
Identities = 11/37 (29%), Positives = 18/37 (47%)
Frame = -3
Query: 18 GVESFLDFAYTKGRPQGDEILCPCAKCGNCCWEKRNV 54
G E + A + + + C C CG CCW +R++
Sbjct: 163 GKEGEWELAMREAQSGWEWCCCCCCCCGCCCWLERDI 53
>AV781219
Length = 435
Score = 28.1 bits (61), Expect = 7.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 813 LPWI*SLWPKRIDISYSIVIVFKFTSGLQSYPCLPTLLQKLI 854
+ WI WP R D S ++ I+ L YPCL LL +L+
Sbjct: 412 IKWIRL*WPFRTDTSENLHIIISGYVVLSLYPCLY*LL*ELM 287
>TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Arabidopsis
thaliana;} , complete
Length = 1636
Score = 28.1 bits (61), Expect = 7.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 398 FQMHAALLWTINDYPAYA 415
F +HAA+ WT++D AYA
Sbjct: 1525 FSIHAAIYWTVDDVIAYA 1578
>TC16628 weakly similar to GB|AAH44360.1|27882485|BC044360 C21orf19-like
protein {Danio rerio;} , partial (32%)
Length = 446
Score = 28.1 bits (61), Expect = 7.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 405 LWTINDYPAYAMLSGWSTKGKLACACCNYNTSSTYLKHSHK 445
LW Y +S WS L C C++N +S L+ SH+
Sbjct: 273 LWKHRSI*HYTCVSSWSFSPLLHCKMCSFNCNS--LQDSHR 389
>AW719410
Length = 538
Score = 27.7 bits (60), Expect = 9.9
Identities = 20/91 (21%), Positives = 33/91 (35%), Gaps = 6/91 (6%)
Frame = +3
Query: 218 RTCKASRWKEFPQVAGEFEKSESEYKVPAKVLRHFPLIPRLQRLFMCSRTSDSMRW---- 273
+T + S W++ P + E + + V + RH P + D W
Sbjct: 81 KTRRNSNWEQRPLTENQLEYAALDAVVLIHIFRHLP-----------DQGHDKFGWKSCI 227
Query: 274 --HEEERSKDGKLRHPVDGQAWQDFDGLHLD 302
H E K K +H + Q +D D +D
Sbjct: 228 MSHSENTKKSNKKKHVANSQIDRD*DHPSID 320
>TC9671 homologue to UP|Q9LFP7 (Q9LFP7) Serine/threonine specific protein
kinase-like, partial (8%)
Length = 565
Score = 27.7 bits (60), Expect = 9.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 49 WEKRNVIYNHLICTGFLEGYNVWIHHGEQMMEIDEEMEEDYHDDIDG 95
W K+ ++ I + GY VW+ GE ++ D+EM E YH + G
Sbjct: 345 WRKQEMVKKKKIFNSSMLGYWVWVIVGE--IDGDKEMHE-YHLPLKG 214
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.348 0.153 0.544
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,379,584
Number of Sequences: 28460
Number of extensions: 340075
Number of successful extensions: 3406
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3401
length of query: 1065
length of database: 4,897,600
effective HSP length: 100
effective length of query: 965
effective length of database: 2,051,600
effective search space: 1979794000
effective search space used: 1979794000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0250.10