TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0247.1
         (323 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP054819                                                               34  0.029

>BP054819 
          Length = 537

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 20/81 (24%), Positives = 36/81 (43%), Gaps = 7/81 (8%)
 Frame = -3

Query: 32  KPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTR--LVDEDG-----VKIPREKMN 84
           +PP+ DG  +DY K R+  F    D   W  +V G+     V+ +G     V+ P E+  
Sbjct: 283 RPPILDGTNYDY*KVRMTAFLKSIDNKTWKAIVKGWKHPTKVEVEGTSTTVVEKPEEEWT 104

Query: 85  GDQKKKYKDHHRARTILLNAI 105
             + +    + +A   + N +
Sbjct: 103 SVEDEAALGNSKALNAIFNGV 41


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.343    0.150    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,325,364
Number of Sequences: 28460
Number of extensions: 45142
Number of successful extensions: 394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of query: 323
length of database: 4,897,600
effective HSP length: 90
effective length of query: 233
effective length of database: 2,336,200
effective search space: 544334600
effective search space used: 544334600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 55 (25.8 bits)