BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.16
(1549 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 263 9e-76
BP052756 187 1e-47
BP084332 142 4e-34
AV780009 108 8e-24
BP052632 99 7e-21
BP075943 74 1e-13
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 48 4e-13
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 70 3e-12
BP085942 68 1e-11
AV766665 67 3e-11
BP063694 65 1e-10
AU088980 61 2e-09
BP057233 58 1e-08
AV427921 57 2e-08
AV766088 55 8e-08
BP043850 54 2e-07
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 54 2e-07
BP033602 51 1e-06
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 50 2e-06
TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprot... 35 4e-06
>BP066094
Length = 532
Score = 263 bits (673), Expect(3) = 9e-76
Identities = 128/149 (85%), Positives = 140/149 (93%)
Frame = +2
Query: 1158 ARLEAIRLLISFSVNHNIILHQMDVKSAFLNGYISEEVYVKQPPGFEDNKHPEHVYKLKK 1217
++ EAIRLLISFSVNHNIILHQM+VKSAFLNGYISEEVYV QPPG ED K+ +H++KLKK
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1218 SLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCRTYKNDILIVQIYVDDIIFGSANP 1277
SLYGLKQAPRAWYERLSSFLL+NE VRGK D TLFC+TYK+DILIVQIYVDDIIFGSANP
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1278 SLCKEFSKLMQAEFEMSMMGELKYFLGIQ 1306
SLCKEFS++MQAEFEM MMGELKYFLGIQ
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 37.4 bits (85), Expect(3) = 9e-76
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +3
Query: 1142 YSQQEGIDYTETFAPVAR 1159
YSQQ GIDYTETFAPVAR
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
Score = 23.1 bits (48), Expect(3) = 9e-76
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1132 RNKARLVAQG 1141
RNKARLVAQG
Sbjct: 10 RNKARLVAQG 39
>BP052756
Length = 488
Score = 187 bits (474), Expect = 1e-47
Identities = 102/112 (91%), Positives = 106/112 (94%)
Frame = +2
Query: 280 RDQEKSSRRKLS*PLMQLILMKLSQKKMKLWRL*WLPLAKVLELQKMIQTLRMMMRYSLT 339
RDQEKSSRRK S*PLMQLILMKLSQKKMKLWRL*WLPLA+VL+LQKMIQTLRMMMRYSL
Sbjct: 152 RDQEKSSRRKPS*PLMQLILMKLSQKKMKLWRL*WLPLAEVLKLQKMIQTLRMMMRYSLI 331
Query: 340 FLYLS*ELPYLK**RNMIFC*ISIKNSKRNILLKPVLWKFMRSQSLNSWMKT 391
FLYLS*EL YLK**RNMIFC*ISIK+ KRN+LLKPVL KFMRSQSLNS MKT
Sbjct: 332 FLYLS*ELLYLK**RNMIFC*ISIKSLKRNMLLKPVLQKFMRSQSLNSLMKT 487
>BP084332
Length = 368
Score = 142 bits (358), Expect = 4e-34
Identities = 67/88 (76%), Positives = 77/88 (87%)
Frame = +2
Query: 1462 QNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHS 1521
Q+TIALSTAEAEY+SAA C TQ +WMK+ LEDY + +PIYCDNTAAISLSKNPILHS
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHS 211
Query: 1522 RAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
RAKHIEVKYH+IRD+VQKG L L++VDT
Sbjct: 212 RAKHIEVKYHFIRDYVQKGVLLLKFVDT 295
>AV780009
Length = 529
Score = 108 bits (269), Expect = 8e-24
Identities = 53/152 (34%), Positives = 89/152 (57%), Gaps = 1/152 (0%)
Frame = -1
Query: 1399 AVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWS 1458
A R+L+Y+KG GL + S L + D+D+AG R+S +G FLG++L++W
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1459 SKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLK-KVPIYCDNTAAISLSKNP 1517
+K+Q T++ S++EAEY + A + W+ + L++ VP++CDN +A+ ++ NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 1518 ILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
H R KHIE+ H +R +Q G + L + T
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPIST 71
>BP052632
Length = 489
Score = 98.6 bits (244), Expect = 7e-21
Identities = 51/126 (40%), Positives = 71/126 (55%)
Frame = -3
Query: 901 KTPYELCKGRQPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNI 960
KTPYEL +GR+P +SYFHPFG F+LNT + +GKFD+K K LGYS SK + ++N
Sbjct: 487 KTPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNS 308
Query: 961 IHQTVEESIQIRFDDKLGSEKSKLFERFADLSIDCSEANQPIKSPEDVAPEAEASEDFPT 1020
Q VEESI ++FDD +L + F +L + + P + E P
Sbjct: 307 RTQVVEESINVKFDD*SIEATYRLEKDFLNLDLSDQDEEVPTNEGQPSETSHEEPSTQPQ 128
Query: 1021 TSDPLQ 1026
T++P Q
Sbjct: 127 TTNPWQ 110
>BP075943
Length = 547
Score = 74.3 bits (181), Expect = 1e-13
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Frame = -3
Query: 1265 IYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLE 1324
+YVDD++ + + + +F + +GE KYFLG++I + ++Q+KY L+
Sbjct: 515 LYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQ 336
Query: 1325 LLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKL-----YRGMIGSLLYLTASRPDIL 1379
L+ + P + + + + L YR ++G LLYL +RPDI
Sbjct: 335 LISDSG----HFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDIT 168
Query: 1380 FSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTS 1421
F+V+ ++F S P + H + LKYL G+ GL Y +S
Sbjct: 167 FAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASS 42
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 48.1 bits (113), Expect(2) = 4e-13
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 1455 VTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLED 1493
V W S+ Q +ALSTAEAE+++A C + +WMKN L++
Sbjct: 27 VAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQN 143
Score = 44.7 bits (104), Expect(2) = 4e-13
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 1503 IYCDNTAAISLSKNPILHSRAKHIEVKYHY 1532
+YCDN AI L +N HSR+KHI+V+YH+
Sbjct: 173 LYCDNQGAIYLGQNSTFHSRSKHIDVRYHW 262
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 70.1 bits (170), Expect = 3e-12
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Frame = +2
Query: 1235 SFLLQNEFVRGKGDNTLFCRTYK-NDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEM 1293
SF++ + R D+ + + + ND +I+ +YVDD++ N +E + EF+M
Sbjct: 8 SFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDM 187
Query: 1294 SMMGELKYFLGIQI--DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEE 1351
+G LG+QI D++ ++ QK Y ++L++FNM DCN TP+ L
Sbjct: 188 KDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM 367
Query: 1352 VSSKVCQKL------YRGMIGSLLY 1370
+ S +++ Y +GSL+Y
Sbjct: 368 IPSSEAERMEMSRVPYASAVGSLMY 442
>BP085942
Length = 208
Score = 68.2 bits (165), Expect = 1e-11
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +3
Query: 770 KYELVIVDDYSRWTWVKFLRHKDETHTMFTNFITQVQKEFQSSVITVRSDHGGEFENKAF 829
K+ +V++D ++ HKDETHT FTNFITQVQKEFQ+SVITVRSDHG ++F
Sbjct: 9 KHRVVLLDQ-------NWILHKDETHTRFTNFITQVQKEFQTSVITVRSDHGWRI*EQSF 167
Score = 33.5 bits (75), Expect = 0.26
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = +1
Query: 821 GGEFENKAFEDLFNSQG 837
GGEFENKA E+ FNSQG
Sbjct: 142 GGEFENKALEEWFNSQG 192
>AV766665
Length = 601
Score = 66.6 bits (161), Expect = 3e-11
Identities = 35/76 (46%), Positives = 46/76 (60%)
Frame = +3
Query: 1398 TAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTW 1457
T RI YLK + G +++K + ++ GF AD+ G V+R ST G FL NLVTW
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1458 SSKRQNTIALSTAEAE 1473
SK+QN IA S+ EAE
Sbjct: 540 RSKQQNIIARSSGEAE 587
>BP063694
Length = 511
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Frame = -2
Query: 689 IWHRRLGHASLRKISQLSK---LNLVRGLPHLKYSSEALCEACQKGKFTKKPFKAKNVVS 745
+WH RLGH + I QL K L++ LP C +CQ K + F N +
Sbjct: 360 LWHSRLGHVNFDIIKQLHKHGCLDVSSILP-----KPICCTSCQMAKSKRLVFHDNNKRA 196
Query: 746 TTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDETHTMFTNFITQV 805
+ L+L+H DL GP SI G Y ++ VDD+SR+TW L+ K + + F +
Sbjct: 195 SA-VLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFM 19
Query: 806 QKEF 809
+ F
Sbjct: 18 ENRF 7
>AU088980
Length = 360
Score = 60.8 bits (146), Expect = 2e-09
Identities = 29/110 (26%), Positives = 52/110 (46%)
Frame = +2
Query: 851 NGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYELCKGR 910
N +VERK+ + + R +M S + K+ W A+ A Y+ N + + + PY+
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 911 QPDISYFHPFGSTCFMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNI 960
P + FG+ C+ K D +A KC FLG+ + G+ + ++
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDL 331
>BP057233
Length = 473
Score = 57.8 bits (138), Expect = 1e-08
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = -2
Query: 1499 KKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 1549
+K ++CDN +A +L+ NP+LH+R+KHIE+ HYIRD V + + + YV T
Sbjct: 457 RKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPT 305
>AV427921
Length = 284
Score = 57.0 bits (136), Expect = 2e-08
Identities = 29/71 (40%), Positives = 40/71 (55%)
Frame = +1
Query: 847 TPQQNGVVERKNITLQEMARTMMQESSMAKHFWAEAINTACYIQNRISIRPILEKTPYEL 906
TPQQNGV ERKN T+ M R+++ S + K F EA+ + +I NR + P E
Sbjct: 22 TPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEA 201
Query: 907 CKGRQPDISYF 917
GRQP + +F
Sbjct: 202 WSGRQPAVDHF 234
>AV766088
Length = 501
Score = 55.1 bits (131), Expect = 8e-08
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = -3
Query: 687 QWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKKPFKAKNVVST 746
Q +WH RLGH S + L + N L YS +CE+C GK + PF + N V T
Sbjct: 313 QSLWHSRLGHPSSSALRYL-RSNKFISYELLNYS--PVCESCVFGKHVRLPFVSSNNV-T 146
Query: 747 TRPLELLHIDLF-GPVKTESIGGKKYELVIVDDYSRWTWVKFLRHKDE 793
P ++LH DL+ PV S G ++ ++ +DD++ + W L +K +
Sbjct: 145 VMPFDILHSDLWTSPVL--SSAGHRFYVLFLDDFTDFLWTFPLSNKSQ 8
>BP043850
Length = 515
Score = 53.9 bits (128), Expect = 2e-07
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = -1
Query: 1482 TQTIWMKNHLEDYG-LSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKG 1540
++ IW++ L + G L + P++ DNT+AI ++ NP+ H +HIEV H +R+ +
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 1541 TLSLEYVDT 1549
++L +V T
Sbjct: 335 VITLPHVST 309
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 53.9 bits (128), Expect = 2e-07
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +1
Query: 1486 WMKNHLEDYGLSLKKVP-IYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSL 1544
W+ L+D + ++ +YCDN +A ++ NP+ H R KHIE+ H +R+ +QKG + L
Sbjct: 4 WLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHL 183
>BP033602
Length = 533
Score = 51.2 bits (121), Expect = 1e-06
Identities = 29/99 (29%), Positives = 53/99 (53%)
Frame = +3
Query: 682 SVNDEQWIWHRRLGHASLRKISQLSKLNLVRGLPHLKYSSEALCEACQKGKFTKKPFKAK 741
SV D+ +WH RLGH + + + L +L + + S CE+C K + P+ ++
Sbjct: 255 SVRDQIMLWHNRLGHPNFQYLRHLFP-DLFKNVN----CSSLECESCVLAKNQRAPYYSQ 419
Query: 742 NVVSTTRPLELLHIDLFGPVKTESIGGKKYELVIVDDYS 780
+RP L+H D++GP K + GK++ + +DD++
Sbjct: 420 PY-HASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 50.4 bits (119), Expect = 2e-06
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = -1
Query: 1318 QKKYTLELLKKFNMSDCN-ISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRP 1376
QK Y ++LKKF M++ IS T + +V Y+ +IGS+ YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 1377 DILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGL 1415
DI+ V L +RF +P + H +R L+Y+KGT G+
Sbjct: 559 DIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGI 446
>TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(4%)
Length = 528
Score = 35.4 bits (80), Expect(2) = 4e-06
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 1506 DNTAAISLSKNPILHSRAKHIE 1527
DN +AI L+KNP+ H R+KHIE
Sbjct: 5 DNKSAIDLAKNPVSHGRSKHIE 70
Score = 33.5 bits (75), Expect(2) = 4e-06
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 1525 HIEVKYHYIRDHVQKGTLSLEYVDT 1549
+IE KYH++RD V KG +SL++ T
Sbjct: 69 NIETKYHFLRDQVTKGKISLKHCGT 143
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.330 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,554,065
Number of Sequences: 28460
Number of extensions: 367731
Number of successful extensions: 2267
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 2225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2261
length of query: 1549
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1447
effective length of database: 1,994,680
effective search space: 2886301960
effective search space used: 2886301960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0240.16