BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0239.10
(553 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 150 4e-37
TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 116 1e-26
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ... 93 1e-19
AV770800 70 7e-13
TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imp... 64 8e-11
TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r... 61 4e-10
TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial ... 58 3e-09
AI967706 55 4e-08
BF177544 51 6e-07
TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberell... 47 8e-06
AV418844 44 7e-05
CN825078 42 3e-04
BP057332 38 0.004
TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible gibberell... 37 0.008
AV421188 37 0.008
TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, pa... 33 0.16
AV767223 32 0.35
AV414168 29 1.7
TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, part... 28 3.0
AV769189 28 5.0
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 150 bits (380), Expect = 4e-37
Identities = 87/285 (30%), Positives = 148/285 (51%), Gaps = 5/285 (1%)
Frame = +2
Query: 272 PFYQVMQFAGVQAILENVASGTKIHLININIGCGVMCTGLMQALSERQENPVEILKITAV 331
P+ + F QAILE ++H+I+ I G+ LMQAL+ R P ++T +
Sbjct: 11 PYLKFAHFTANQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRPGGP-PAFRLTGI 187
Query: 332 GVA---NKTKIEETGKRLMSFAESLNLPFSYNMIFVTDMMEIKVEQFDVE--DDEAVAVY 386
G N +++ G +L AE++++ F Y + ++ D+ ++E+VAV
Sbjct: 188 GPPAPDNSDHLQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLDLRPPEEESVAVN 367
Query: 387 SPYFLRSLVSDSDSLENLMKVLRKIKPNIMINLGVEANHNSPSFVNRFVEALFYYSAYFD 446
S + L L++ +LE + V+R+++P I+ + EA HN SF++RF E+L YYSA FD
Sbjct: 368 SVFELHKLLARPGALEKVFSVIRQVQPEILTVVEQEAGHNGASFLDRFTESLHYYSALFD 547
Query: 447 CLDTCMKEEHECRMRIEEMLSEKIRNIVAMEDRERTVRSVKIDVWRRFFARYRMVETRLS 506
L+ E + + E L ++I N+VA E +R R + WR F + L
Sbjct: 548 SLEGSSAVESQDKAMTEIYLGKQICNVVACEGSDRIERHETLTQWRTRFNSAGLSPVHLG 727
Query: 507 ESAVYQANLVAKKFACGNSCTIDKNGKCLLIGWKGTPIHSISAWK 551
+A QA+++ FA G+ +++N CL +GW P+ + SAW+
Sbjct: 728 SNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSAWQ 862
>TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (57%)
Length = 1406
Score = 116 bits (290), Expect = 1e-26
Identities = 81/296 (27%), Positives = 146/296 (48%), Gaps = 10/296 (3%)
Frame = +1
Query: 266 LCHQKMPFYQVMQFAGVQAILENVASGTKIHLININIGCGVMCTGLMQALSERQENPVEI 325
+ +Q P+++ + AI E +A+ ++IH+I+ I G L+QAL+ R P
Sbjct: 157 ILYQICPYWKFAYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGP-PF 333
Query: 326 LKITAVGVANKTK-----IEETGKRLMSFAESLNLPFSYNMIFVTDMMEIKVEQFDVEDD 380
++IT V + +E G+RL FA S +PF ++ ++ E++ E V
Sbjct: 334 IRITGVDDSQSFHARGGGLEIVGERLSDFARSYGVPFEFHSAAMSGC-EVERENLGVRPG 510
Query: 381 EAVAVYSPYFLRSLVSDSDSLEN----LMKVLRKIKPNIMINLGVEANHNSPSFVNRFVE 436
EA+AV PY L + +S S EN L+++++ + P ++ E+N N+ F NRF+E
Sbjct: 511 EALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTSPFFNRFME 690
Query: 437 ALFYYSAYFDCLDTCMKEEHECRMRIEE-MLSEKIRNIVAMEDRERTVRSVKIDVWRRFF 495
L YY+A F+ +D + + R+ E+ ++ I N+VA E ER R W+ F
Sbjct: 691 TLEYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRF 870
Query: 496 ARYRMVETRLSESAVYQANLVAKKFACGNSCTIDKNGKCLLIGWKGTPIHSISAWK 551
+ + LS S + + + F ++ +++ L +GW + + SAW+
Sbjct: 871 SMAGFKQWPLSSSVMTATQNLLRDF--NHNYRLEQRDGALCLGWMKRALVTSSAWR 1032
>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (49%)
Length = 1051
Score = 93.2 bits (230), Expect = 1e-19
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 5/246 (2%)
Frame = +3
Query: 311 LMQALSERQENPVEILKITAVGVANKT-KIEETGKRLMSFAESLNLPFSYNMIFVTDMME 369
L+ LS R +K+ AV +++ G L AE L + F + ++ + E
Sbjct: 3 LLHELSARLAGKPVTVKVIAVAEDGADERLKTVGDMLGQQAERLRIGFEFKVVSCK-LAE 179
Query: 370 IKVEQFDVEDDEAVAVYSPYFLRSLVSDSDSLEN----LMKVLRKIKPNIMINLGVEANH 425
+ E E DE +AV + L + +S S EN L++ ++ + P ++ + E N
Sbjct: 180 LTREALGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKALSPRVVTLVEQELNT 359
Query: 426 NSPSFVNRFVEALFYYSAYFDCLDTCMKEEHECRMRIEEMLSEKIRNIVAMEDRERTVRS 485
N+ FV R E+ YYSA FD +++ + E R++IE+ LS K+ N VA E R+R R
Sbjct: 360 NTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQGLSRKVGNSVACEGRDRVERC 539
Query: 486 VKIDVWRRFFARYRMVETRLSESAVYQANLVAKKFACGNSCTIDKNGKCLLIGWKGTPIH 545
WR AR M RL A + + N T+ + + GW G +
Sbjct: 540 EVFGKWR---ARMSMAGFRLRPVGQRVAESITAQLGAENRVTVKEENGGICCGWVGRTLT 710
Query: 546 SISAWK 551
SAW+
Sbjct: 711 VASAWR 728
>AV770800
Length = 514
Score = 70.5 bits (171), Expect = 7e-13
Identities = 42/128 (32%), Positives = 57/128 (43%)
Frame = -1
Query: 424 NHNSPSFVNRFVEALFYYSAYFDCLDTCMKEEHECRMRIEEMLSEKIRNIVAMEDRERTV 483
NHN + RF EAL YYS FD L+ C E + E L +I N+V E R
Sbjct: 514 NHNEDGLLERFTEALHYYSTVFDSLEGCPVEPD--KALAEMYLQREICNVVCCEGTARVE 341
Query: 484 RSVKIDVWRRFFARYRMVETRLSESAVYQANLVAKKFACGNSCTIDKNGKCLLIGWKGTP 543
R + WR + L A QA+++ F+ C +K G CL +GW P
Sbjct: 340 RHEPLAKWRERLGKAGFRPVHLGSDAFTQASMLFTLFSSEGYCVEEKEG-CLTLGWHSRP 164
Query: 544 IHSISAWK 551
+ SAW+
Sbjct: 163 PLAASAWQ 140
>TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(27%)
Length = 711
Score = 63.5 bits (153), Expect = 8e-11
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Frame = +3
Query: 411 IKPNIMINLGVEANHNSPSFVNRFVEALFYYSAYFDCLDTCMKEEHECRMRIEE-MLSEK 469
+ P ++ + E N N+ F+ RFVE + YY A F+ +D + EH+ R+ +E+ L+ +
Sbjct: 12 LSPKVVTLVEQEFNTNNAPFLQRFVETMNYYQAVFESIDVVLPREHKERINVEQHCLARE 191
Query: 470 IRNIVAMEDRERTVRSVKIDVWRRFFARYRMVETRLSESAVYQANLVAKKFACGNSCTID 529
+ N+VA E ER R ++ WR FA L+ + + + T++
Sbjct: 192 VVNLVACEGAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIKDLLESYR--GHYTLE 365
Query: 530 KNGKCLLIGWKGTPIHSISAWK 551
+ L +GW + + AW+
Sbjct: 366 ERDGALFLGWMNQVLVASCAWR 431
>TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
modulator, partial (33%)
Length = 556
Score = 61.2 bits (147), Expect = 4e-10
Identities = 47/199 (23%), Positives = 86/199 (42%), Gaps = 3/199 (1%)
Frame = +2
Query: 192 VSCQQFERASFLLQNFQGNSPHHGSAVQRVIFHFAQALQERINKENGTTLKGSDERVKER 251
V + + A L+++ + A+++V +FAQAL RI T+ S V
Sbjct: 2 VQKENHKLADTLVKHIGVVAASQAGAMRKVASYFAQALARRIYGIFPDTVDSSLHDVLHM 181
Query: 252 HLIELLEVDTNITILCHQKMPFYQVMQFAGVQAILENVASGTKIHLININIGCGVMCTGL 311
H E P+ + F QAILE A+ ++H+++ + G+ L
Sbjct: 182 HFYE--------------SCPYLKFAHFTANQAILEAFATAGRVHVVDFGLKQGMQWPAL 319
Query: 312 MQALSERQENPVEILKITAVGVA---NKTKIEETGKRLMSFAESLNLPFSYNMIFVTDMM 368
MQAL+ R P ++T +G N +++ G +L A+++ + F + +
Sbjct: 320 MQALALRPGGP-PTFRLTGIGPPQPDNSDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLA 496
Query: 369 EIKVEQFDVEDDEAVAVYS 387
++ ++ EAVAV S
Sbjct: 497 DLDPNMLEIRPGEAVAVNS 553
>TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (16%)
Length = 670
Score = 58.2 bits (139), Expect = 3e-09
Identities = 30/91 (32%), Positives = 46/91 (49%)
Frame = +1
Query: 463 EEMLSEKIRNIVAMEDRERTVRSVKIDVWRRFFARYRMVETRLSESAVYQANLVAKKFAC 522
E L E+I N+VA E +R R + WR L +A QA+++ FA
Sbjct: 55 EVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQASMLLALFAG 234
Query: 523 GNSCTIDKNGKCLLIGWKGTPIHSISAWKFP 553
G+ +++N CL++GW P+ + SAWK P
Sbjct: 235 GDGYRVEENNGCLMLGWHTRPLIATSAWKLP 327
>AI967706
Length = 357
Score = 54.7 bits (130), Expect = 4e-08
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +2
Query: 395 VSDSDSLENLMKVLRKIKPNIMINLGVEANHNSPSFVNRFVEALFYYSAYFDCLDTCMKE 454
VS + + L+++++ + P ++ + + N N+ F+ RF+ A YYSA FD LD +
Sbjct: 92 VSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFIIAYEYYSAVFDSLDATLPR 271
Query: 455 EHECRMRIE-EMLSEKIRNIVAMEDRER 481
E + R+ +E + L+ I NIVA E +R
Sbjct: 272 ESQDRVNVERQCLARDIVNIVACEGEDR 355
>BF177544
Length = 318
Score = 50.8 bits (120), Expect = 6e-07
Identities = 28/87 (32%), Positives = 48/87 (54%), Gaps = 4/87 (4%)
Frame = +3
Query: 381 EAVAVYSPYFLRSLVSDSDSLEN----LMKVLRKIKPNIMINLGVEANHNSPSFVNRFVE 436
EA+ V + L + +S S N L+++++ + P ++ + + N N+ F+ RFVE
Sbjct: 54 EALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFLQRFVE 233
Query: 437 ALFYYSAYFDCLDTCMKEEHECRMRIE 463
A YYSA F+ LD + E + RM +E
Sbjct: 234 AYKYYSAVFESLDITLPRESQDRMNVE 314
>TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein (OJ1127_E01.12 protein),
partial (4%)
Length = 691
Score = 47.0 bits (110), Expect = 8e-06
Identities = 26/87 (29%), Positives = 45/87 (50%), Gaps = 6/87 (6%)
Frame = +2
Query: 470 IRNIVAMEDRERTVRSVKIDVWRRFFAR---YRMVETRLSESAVYQANLVAKKFACGNSC 526
IRNI+A E RER R WR+ +R + ++E + Q+ + K ++C N
Sbjct: 2 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCM--GVTERELVQSRFLLKMYSCENYS 175
Query: 527 TI---DKNGKCLLIGWKGTPIHSISAW 550
+ + G+ L +GW P++++SAW
Sbjct: 176 VMKQEEDGGEGLTLGWLDQPLYTVSAW 256
>AV418844
Length = 284
Score = 43.9 bits (102), Expect = 7e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +1
Query: 293 TKIHLININIGCGVMCTGLMQALSERQENPVEILKITAV-----GVANKTKIEETGKRLM 347
+ +H+I+ I G L+++LSER P L++T + G ++EETG+RL
Sbjct: 10 SSVHIIDFGICYGFQWPCLIKSLSERHGGPPR-LRVTGIELPRPGFRPAERVEETGRRLE 186
Query: 348 SFAESLNLPFSYNMI 362
++ + +PF YN +
Sbjct: 187 NYCKKFKVPFEYNCL 231
>CN825078
Length = 650
Score = 41.6 bits (96), Expect = 3e-04
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Frame = +3
Query: 214 HGSAVQRVIFHFAQALQERINKENGTTLKGSDERVKERHLIELLEVDTNITILCHQKMPF 273
+G +QR+ + + L R + + R E ELL + +C P+
Sbjct: 72 NGEPIQRLGAYMVEGLVARKEASGNSIYHALNCREPEGE--ELLSYMQLLFEIC----PY 233
Query: 274 YQVMQFAGVQAILENVASGTKIHLININIGCGVMCTGLMQALSERQENPVEILKITAVG- 332
+ A AI E + +IH+I+ I G L+QAL+ R + +IT +
Sbjct: 234 LKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHV-RITGIDD 410
Query: 333 ----VANKTKIEETGKRLMSFAESLNLPFSYNMIFVTDMMEIKVEQFDVEDDEAVAVYSP 388
A ++ GKRL +E +P ++ + V ++ + D+ EA+AV P
Sbjct: 411 PVSKYARGDGLDIVGKRLALMSEKFGIPVEFHGVPVFG-PDVTRDMLDIRPGEALAVNFP 587
Query: 389 YFLRSLVSDSDSLEN 403
L +S + N
Sbjct: 588 LQLHHTADESVDVSN 632
>BP057332
Length = 494
Score = 38.1 bits (87), Expect = 0.004
Identities = 25/98 (25%), Positives = 42/98 (42%)
Frame = -2
Query: 453 KEEHECRMRIEEMLSEKIRNIVAMEDRERTVRSVKIDVWRRFFARYRMVETRLSESAVYQ 512
+E+ M E + N++A E ER R W+ R + L+ +
Sbjct: 493 REDKYXLMFEEGLFGRDAVNVIACEGAERVERPETYKQWQVRNRRPGFKQLPLAPELSSR 314
Query: 513 ANLVAKKFACGNSCTIDKNGKCLLIGWKGTPIHSISAW 550
+ KK +D++GK +L GWKG +H++S W
Sbjct: 313 VKEMVKK-EYHKDFVVDEDGKWVLQGWKGRILHAVSCW 203
>TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible
gibberellin-responsive protein, partial (14%)
Length = 740
Score = 37.0 bits (84), Expect = 0.008
Identities = 24/81 (29%), Positives = 39/81 (47%), Gaps = 2/81 (2%)
Frame = +3
Query: 472 NIVAMEDRERTVRSVKIDVWRRFFARYRMVETRLSESAVYQANLVAKKFACGNS--CTID 529
N++A E +ER R W+ +R M R S + Y +++ C + I+
Sbjct: 12 NVIACEGKERVERHELFGKWK---SRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIE 182
Query: 530 KNGKCLLIGWKGTPIHSISAW 550
K+G +L+GWK + S SAW
Sbjct: 183 KDG-AMLLGWKNRSLISASAW 242
>AV421188
Length = 199
Score = 37.0 bits (84), Expect = 0.008
Identities = 22/57 (38%), Positives = 32/57 (55%), Gaps = 5/57 (8%)
Frame = +2
Query: 311 LMQALSERQENPVEILKITAV-----GVANKTKIEETGKRLMSFAESLNLPFSYNMI 362
L++ L ER P + LKIT + G +I+ETG RL ++ + N+PF YN I
Sbjct: 17 LIKFLLERDGGPPK-LKITGIEFPLPGFRPTERIDETGHRLTNYCKRFNVPFEYNAI 184
>TC12650 similar to UP|O23210 (O23210) SCARECROW-like protein, partial (23%)
Length = 414
Score = 32.7 bits (73), Expect = 0.16
Identities = 33/125 (26%), Positives = 54/125 (42%), Gaps = 6/125 (4%)
Frame = +2
Query: 185 LLAAAERVSCQQFERASFLLQ--NFQGNSPHHGSAVQRVIFHFAQALQERINKENGTTLK 242
L+ AA+ Q + A +L+ N + SP G + R FHF ALQ + L
Sbjct: 68 LIRAADCFDSNQLQLAQAILERLNQRLRSPS-GKPLHRAAFHFKDALQ--------SLLS 220
Query: 243 GSDERVKERHLIELLEVDTNITILCH----QKMPFYQVMQFAGVQAILENVASGTKIHLI 298
GS+ L + E+ +I I +P + + F QA+LE + +H++
Sbjct: 221 GSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSI--FTTNQALLEALHGSLFMHVV 394
Query: 299 NINIG 303
+ IG
Sbjct: 395 DFEIG 409
>AV767223
Length = 256
Score = 31.6 bits (70), Expect = 0.35
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -1
Query: 529 DKNGKCLLIGWKGTPIHSISAW 550
D++GK +L GWKG +++ISAW
Sbjct: 256 DEDGKWVLQGWKGRILNAISAW 191
>AV414168
Length = 208
Score = 29.3 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = +1
Query: 284 AILENVASGTKIHLININIGCGVMCTGLMQALSERQENPVEILKITAV 331
AI E + ++H+I+ I G L+QAL+ R P ++ +IT V
Sbjct: 31 AIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRPGGPPKV-RITGV 171
>TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, partial (4%)
Length = 622
Score = 28.5 bits (62), Expect = 3.0
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = +3
Query: 12 NPPPTTEHEKEDHFSKEQNQQQQQQHDHF 40
N P +H++ H + QQQQQ HF
Sbjct: 99 NDPHNPQHQQHQHQQHQHQFQQQQQPQHF 185
>AV769189
Length = 410
Score = 27.7 bits (60), Expect = 5.0
Identities = 20/68 (29%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
Frame = -2
Query: 417 INLGVEANHNSPSFVNRFVEALFYYSAYFDCLDTCMKEEHECR--MRIEEMLSEKIRNIV 474
I L ++A P+ V Y+ Y D +D C+K E + R M E+L E +
Sbjct: 403 IMLKLQAEEIDPALVGNIAPEC--YAVYIDIIDRCLKHEPDERPTMGEVEVLLEHALTLQ 230
Query: 475 AMEDRERT 482
+ED T
Sbjct: 229 LVEDARDT 206
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,411,879
Number of Sequences: 28460
Number of extensions: 123966
Number of successful extensions: 759
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of query: 553
length of database: 4,897,600
effective HSP length: 95
effective length of query: 458
effective length of database: 2,193,900
effective search space: 1004806200
effective search space used: 1004806200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0239.10