BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0239.1
(285 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV766686 126 4e-30
BP035018 120 3e-28
AV766032 70 2e-21
TC16703 70 5e-13
AV769500 70 5e-13
TC16657 68 2e-12
AV415752 44 4e-07
TC12733 similar to UP|Q9SAS9 (Q9SAS9) Heat shock protein 90-2 (F... 49 7e-07
TC8154 35 0.015
TC17980 30 0.36
BP080905 30 0.47
BP051395 30 0.61
AV408058 28 1.8
BP043852 27 4.0
BP039834 27 5.2
TC8996 homologue to UP|BAD10669 (BAD10669) Lipoxygenase-like pro... 26 8.9
AU251602 26 8.9
>AV766686
Length = 536
Score = 126 bits (317), Expect = 4e-30
Identities = 80/141 (56%), Positives = 86/141 (60%), Gaps = 29/141 (20%)
Frame = +2
Query: 108 KSSFRNLSAKCRQRKLRLTGLTEGLSPETQRKVVPSSFRGKEFNGLSVSPKS-------- 159
K F+ L RKLRLTGLTEGLSPETQRKVVPSSFRG+EFNG+ PK
Sbjct: 32 KIKFQKLVGGES*RKLRLTGLTEGLSPETQRKVVPSSFRGQEFNGVVRFPKESTVCPESS 211
Query: 160 ---RR------------------FAQKVQPMVEVHSVFPLVVGVDRKKLPKAAAAAVGGD 198
RR F+ +V V SVFP V GVDRKKLPKAAAAAV D
Sbjct: 212 AEGRRWSSGSSNKMTQI*N*K*GFSLLAARIVVVSSVFPSVAGVDRKKLPKAAAAAVDSD 391
Query: 199 ETTIRNMGFVVDVARVPTVLT 219
TTIRNMGFVV+V RVPTVLT
Sbjct: 392 GTTIRNMGFVVEVTRVPTVLT 454
Score = 43.1 bits (100), Expect = 5e-05
Identities = 44/159 (27%), Positives = 60/159 (37%), Gaps = 36/159 (22%)
Frame = +3
Query: 108 KSSFRNLSAKCRQRKLRLTGLTEGLSPETQRKVVPSSFRGKEFNGLSVSPKSRRFAQKVQ 167
KSSFRNLS + R+ G + ++ F + LSVSPK+RRFAQKVQ
Sbjct: 33 KSSFRNLSVESRRGSCGSRG*RRDCRRRHKGRLFLHPFAARNSTALSVSPKNRRFAQKVQ 212
Query: 168 PMVE---------------------------------VHSVFPLVVGVDRKKLPKAAAAA 194
P V+ H L R++ + + A
Sbjct: 213 PKVDGGRRGRRIK*PKYEIENRVFLSSRQGS**YPLFFHRSPELTGKSSRRRQRRRSTAT 392
Query: 195 VGGDETTI---RNMGFVVDVARVPTVLTCERRPGDTGIK 230
T + ++ GF R CERRP DTGI+
Sbjct: 393 ERRSGTWVLLWKSQGFQRY*PR------CERRPDDTGIE 491
>BP035018
Length = 464
Score = 120 bits (301), Expect = 3e-28
Identities = 77/130 (59%), Positives = 79/130 (60%), Gaps = 29/130 (22%)
Frame = +2
Query: 107 RKSSFRNLSAKCRQRKLRLTGLTEGLSPETQRKVVPSSFRGKEFNGLSVSPKS------- 159
RKSS NLSAK R RKLRL GLTE LSPETQRKVVPSSFRGKEFN + PK
Sbjct: 74 RKSSX*NLSAKSR*RKLRLMGLTEELSPETQRKVVPSSFRGKEFNDVVRFPKESTVCPES 253
Query: 160 ----RR------------------FAQKVQPMVEVHSVFPLVVGVDRKKLPKAAAAAVGG 197
RR F + VHSVFPLVVGVDRKKLP AAAAAV G
Sbjct: 254 SADGRRWSSGSSNKMTEI*NRK*GFTLLATRIAAVHSVFPLVVGVDRKKLPTAAAAAVRG 433
Query: 198 DETTIRNMGF 207
D TTIRNMGF
Sbjct: 434 DGTTIRNMGF 463
Score = 40.8 bits (94), Expect = 3e-04
Identities = 27/76 (35%), Positives = 39/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 101 RLRYSYRKSSFRN-LSAKCRQRKLRLT----GLTEGLSPETQRKVVPSSFRGKEFNGLSV 155
RL++ ++ N + CR+R R + G + ++ F + LSV
Sbjct: 42 RLKHIQELKAYENQVCETCRRRVARESCGSWG*RRNCRRRHKERLFLHPFAARNSTTLSV 221
Query: 156 SPKSRRFAQKVQPMVE 171
SPKSRRFAQKVQPMV+
Sbjct: 222 SPKSRRFAQKVQPMVD 269
>AV766032
Length = 550
Score = 69.7 bits (169), Expect(2) = 2e-21
Identities = 43/77 (55%), Positives = 45/77 (57%)
Frame = +2
Query: 127 GLTEGLSPETQRKVVPSSFRGKEFNGLSVSPKSRRFAQKVQPMVEVHSVFPLVVGVDRKK 186
G TE LSPETQRK VPSSFRG+E N K + S LV GVDRKK
Sbjct: 320 GSTEELSPETQRKGVPSSFRGQELNDAVCFTKELTVCPESSAEGRRWSSGSLVDGVDRKK 499
Query: 187 LPKAAAAAVGGDETTIR 203
LPKA AAAV GD T IR
Sbjct: 500 LPKAVAAAVDGDGTMIR 550
Score = 48.5 bits (114), Expect(2) = 2e-21
Identities = 27/43 (62%), Positives = 29/43 (66%)
Frame = +1
Query: 89 ARFLLSFGFVAKRLRYSYRKSSFRNLSAKCRQRKLRLTGLTEG 131
ARFL F A RYSYRKSS RNLSAK R+RK LTG+ G
Sbjct: 205 ARFLPFCSFSA*CFRYSYRKSSLRNLSAKSRRRKTWLTGVDRG 333
>TC16703
Length = 514
Score = 69.7 bits (169), Expect = 5e-13
Identities = 37/58 (63%), Positives = 39/58 (66%)
Frame = +2
Query: 1 MAIAESIQSLGLNIRTHACLSDYRRIDPIHRIEYTDPRVSTIITESAQPVGFGHTDSR 58
MA+AESIQS+GLNIR HAC SDYRRIDPI RIEY D RVS H DSR
Sbjct: 296 MAMAESIQSIGLNIRIHACPSDYRRIDPIPRIEYKDSRVSNDYCRIGPTRRVEHKDSR 469
Score = 52.0 bits (123), Expect = 1e-07
Identities = 27/37 (72%), Positives = 28/37 (74%)
Frame = +1
Query: 3 IAESIQSLGLNIRTHACLSDYRRIDPIHRIEYTDPRV 39
IAES+QSLGLN RTHA L IDPIHRIEY D RV
Sbjct: 241 IAESVQSLGLNSRTHASLYGDG*IDPIHRIEYKDSRV 351
Score = 49.7 bits (117), Expect = 6e-07
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = +3
Query: 4 AESIQSLGLNIRTHACLSDYRRIDPIHRIEYTDPRVS 40
A+S+ SL NIRT +DYRRIDPI RIEY DPRVS
Sbjct: 123 AKSVLSLESNIRTLRASNDYRRIDPIPRIEYKDPRVS 233
>AV769500
Length = 373
Score = 69.7 bits (169), Expect = 5e-13
Identities = 38/47 (80%), Positives = 39/47 (82%)
Frame = +2
Query: 100 KRLRYSYRKSSFRNLSAKCRQRKLRLTGLTEGLSPETQRKVVPSSFR 146
K L + RKSSF NLSAK RQRKLRLTGLTE LSPETQRK VPSSFR
Sbjct: 233 KVLPFIVRKSSF*NLSAKSRQRKLRLTGLTEELSPETQRKGVPSSFR 373
>TC16657
Length = 679
Score = 68.2 bits (165), Expect = 2e-12
Identities = 35/41 (85%), Positives = 36/41 (87%)
Frame = -1
Query: 107 RKSSFRNLSAKCRQRKLRLTGLTEGLSPETQRKVVPSSFRG 147
RKSSFRNLSAK R +KL LTGLTE LSPETQRK VPSSFRG
Sbjct: 124 RKSSFRNLSAKSRHKKLPLTGLTEKLSPETQRKGVPSSFRG 2
Score = 35.0 bits (79), Expect = 0.015
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -2
Query: 78 PKTPNVCMMQYARFLLSFGFVAKRLR--YSYR 107
P ++C ARFLLSFGF+AKRLR + YR
Sbjct: 507 PIHSHLCFPVLARFLLSFGFIAKRLRTLHKYR 412
>AV415752
Length = 376
Score = 43.9 bits (102), Expect(2) = 4e-07
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = -3
Query: 189 KAAAAAVGGDETTIRNMGFVVDVARVPTVLT 219
KAAA AV D TTIRNMGFVV VARVP LT
Sbjct: 374 KAAATAVECDRTTIRNMGFVVVVARVPMGLT 282
Score = 25.8 bits (55), Expect(2) = 4e-07
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 220 CERRPGDTGIK 230
CERRP DTGIK
Sbjct: 277 CERRPEDTGIK 245
>TC12733 similar to UP|Q9SAS9 (Q9SAS9) Heat shock protein 90-2 (Fragment),
partial (6%)
Length = 980
Score = 49.3 bits (116), Expect = 7e-07
Identities = 27/59 (45%), Positives = 33/59 (55%)
Frame = -2
Query: 160 RRFAQKVQPMVEVHSVFPLVVGVDRKKLPKAAAAAVGGDETTIRNMGFVVDVARVPTVL 218
R F V ++ VFPLV G RK K A AV GDET I MGFVV++ + P V+
Sbjct: 448 RDFVLLVARIIVAQLVFPLVAGFGRKMPLKVAVVAVDGDETRI*TMGFVVELTKTPMVV 272
>TC8154
Length = 503
Score = 35.0 bits (79), Expect = 0.015
Identities = 17/29 (58%), Positives = 21/29 (71%)
Frame = -2
Query: 185 KKLPKAAAAAVGGDETTIRNMGFVVDVAR 213
+KLPKA A+AV GD IRNMG VV + +
Sbjct: 457 EKLPKAVASAVDGDGKMIRNMGSVVGLRK 371
>TC17980
Length = 425
Score = 30.4 bits (67), Expect = 0.36
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3
Query: 93 LSFGFVAKRLRYSY 106
LSFGFVAKR RYSY
Sbjct: 57 LSFGFVAKRFRYSY 16
>BP080905
Length = 439
Score = 30.0 bits (66), Expect = 0.47
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2
Query: 100 KRLRYSYRKSSFRNLSAKCRQRK 122
K L + RKSSF NLSAK RQRK
Sbjct: 371 KVLPFIVRKSSF*NLSAKSRQRK 439
>BP051395
Length = 482
Score = 29.6 bits (65), Expect = 0.61
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +2
Query: 244 DWWLFLAEKGGRRSTHGGGLLAAKEKEERQLLVLVVWHV 282
+WW +G +RS+ GGG A E R+++ V W+V
Sbjct: 353 NWWWRGRHEGEKRSSGGGG*GLATRNEVREVVWSVWWYV 469
>AV408058
Length = 386
Score = 28.1 bits (61), Expect = 1.8
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 89 ARFLLSFGFVAKRLRYSY 106
ARFLL F FVA+R R SY
Sbjct: 184 ARFLLFFSFVARRFRPSY 131
>BP043852
Length = 524
Score = 26.9 bits (58), Expect = 4.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 235 WWCGDVELIDWWLFLAEKGGRRSTHGGGLLAAKEKEERQLL 275
WWCG + LAE +THG G+ + + ER L+
Sbjct: 273 WWCGGDQRKQT---LAEMTTEEATHGKGIEN*RRRRERTLI 160
>BP039834
Length = 584
Score = 26.6 bits (57), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Frame = -3
Query: 228 GIKAVMRWWCGDVELID----WWLF 248
G++ V+ WWCG + WWLF
Sbjct: 369 GLRLVLWWWCGGWLWLRLRWLWWLF 295
>TC8996 homologue to UP|BAD10669 (BAD10669) Lipoxygenase-like protein,
partial (5%)
Length = 562
Score = 25.8 bits (55), Expect = 8.9
Identities = 16/58 (27%), Positives = 27/58 (45%)
Frame = -1
Query: 222 RRPGDTGIKAVMRWWCGDVELIDWWLFLAEKGGRRSTHGGGLLAAKEKEERQLLVLVV 279
+R GD +WWCG V + +F + + RR G + +EE +V++V
Sbjct: 280 QREGDGMWMRTKKWWCGGVAPMVVLVFSS*RRRRRRQGDGAV-----REEETWMVMMV 122
>AU251602
Length = 350
Score = 25.8 bits (55), Expect = 8.9
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -2
Query: 87 QYARFLLSFGFVAKRLRYSY 106
Q A F L F FVAKR YSY
Sbjct: 223 QLASFFLFFCFVAKRSCYSY 164
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,561,851
Number of Sequences: 28460
Number of extensions: 60650
Number of successful extensions: 395
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of query: 285
length of database: 4,897,600
effective HSP length: 89
effective length of query: 196
effective length of database: 2,364,660
effective search space: 463473360
effective search space used: 463473360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0239.1