BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0238.4
(339 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB827458 331 1e-91
TC10513 similar to GB|AAN15531.1|23198008|BT000212 expressed pro... 285 6e-78
BP038165 175 9e-45
TC10674 homologue to GB|AAD34703.1|4966372|F3O9 ESTs gb|N38586 a... 87 5e-18
TC19131 similar to UP|Q9SGT5 (Q9SGT5) T6H22.12 protein, partial ... 86 9e-18
TC9682 similar to UP|Q8VZC0 (Q8VZC0) DTDP-glucose 4-6-dehydratas... 39 0.001
TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%) 39 0.001
TC13393 similar to UP|Q9FMU6 (Q9FMU6) Mitochondrial phosphate tr... 39 0.002
TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-ric... 37 0.004
TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase is... 37 0.005
TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase largest c... 37 0.006
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 37 0.006
BI417269 36 0.008
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 36 0.011
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 36 0.011
AV410336 35 0.014
TC10958 similar to PIR|T47938|T47938 RING finger protein - Arabi... 35 0.024
TC12354 similar to UP|O23702 (O23702) Dehydrogenase, partial (25%) 35 0.024
TC17747 homologue to UP|Q8WML4 (Q8WML4) MUC1 protein precursor, ... 34 0.031
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 34 0.031
>CB827458
Length = 566
Score = 331 bits (848), Expect = 1e-91
Identities = 176/177 (99%), Positives = 176/177 (99%)
Frame = +3
Query: 1 MAAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEK 60
MAAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEK
Sbjct: 36 MAAESGDLNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAEK 215
Query: 61 DHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFR 120
DHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFR
Sbjct: 216 DHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASLSNTVRKLNRDVSKLEVFR 395
Query: 121 KTLMRSLQEEDDNSGGAPDMVAKVQSQSSLTSTSQFGDNEASLPPSVSSSVPSISDT 177
KTLMRSLQEEDDNSGGAPDMVAKVQSQSSLTSTSQFGDNEASLPPS SSSVPSISDT
Sbjct: 396 KTLMRSLQEEDDNSGGAPDMVAKVQSQSSLTSTSQFGDNEASLPPSGSSSVPSISDT 566
>TC10513 similar to GB|AAN15531.1|23198008|BT000212 expressed protein
{Arabidopsis thaliana;}, partial (40%)
Length = 647
Score = 285 bits (730), Expect = 6e-78
Identities = 144/145 (99%), Positives = 144/145 (99%)
Frame = +1
Query: 195 PYSLLLASQSTTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVF 254
PYSLLLASQSTTPRLTP GSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVF
Sbjct: 1 PYSLLLASQSTTPRLTPXGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVF 180
Query: 255 SSMSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQK 314
SSMSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQK
Sbjct: 181 SSMSSSDSGAGSQTGRTRVDGKEFFRQVRNRLSYEQFGAFLANVKELNSHKQTREVTLQK 360
Query: 315 ADEIFGPENKDLYNIFEGLITRNVH 339
ADEIFGPENKDLYNIFEGLITRNVH
Sbjct: 361 ADEIFGPENKDLYNIFEGLITRNVH 435
>BP038165
Length = 520
Score = 175 bits (444), Expect = 9e-45
Identities = 89/115 (77%), Positives = 100/115 (86%), Gaps = 2/115 (1%)
Frame = -3
Query: 227 TSKPVSPRRHSISFATSRGMHDDRTSVFSSM--SSSDSGAGSQTGRTRVDGKEFFRQVRN 284
+SKPVSPRR+++SF+ RG +DDR+SVFSS S S SG GS T RTRVDGKEFFRQVR+
Sbjct: 515 SSKPVSPRRNAVSFSLPRGNYDDRSSVFSSGHGSMSGSGTGSPTARTRVDGKEFFRQVRS 336
Query: 285 RLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENKDLYNIFEGLITRNVH 339
RL YEQFGAFLANVKELNSHK T+E TL+KADEIFGPENKDLY IFEGLITR+VH
Sbjct: 335 RLDYEQFGAFLANVKELNSHKPTKEETLKKADEIFGPENKDLYTIFEGLITRHVH 171
>TC10674 homologue to GB|AAD34703.1|4966372|F3O9 ESTs gb|N38586 and
gb|N38613 come from this gene. {Arabidopsis thaliana;},
partial (17%)
Length = 701
Score = 86.7 bits (213), Expect = 5e-18
Identities = 41/55 (74%), Positives = 48/55 (86%)
Frame = +3
Query: 284 NRLSYEQFGAFLANVKELNSHKQTREVTLQKADEIFGPENKDLYNIFEGLITRNV 338
+RLSYEQF AFLAN+KELN+ KQTRE TL+KADEIFG +NKDLY F+GL+ RNV
Sbjct: 3 SRLSYEQFSAFLANIKELNAQKQTREETLRKADEIFGSDNKDLYLSFQGLLNRNV 167
>TC19131 similar to UP|Q9SGT5 (Q9SGT5) T6H22.12 protein, partial (29%)
Length = 411
Score = 85.9 bits (211), Expect = 9e-18
Identities = 44/103 (42%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Frame = +2
Query: 1 MAAESGD-LNFDLPDDLVQVLPSDPFEQLDLARKITSIALSARVNALESESSELRARIAE 59
M+ SG+ ++FDLPD+++ V+P+DP++QLDLARKITS+A+++RV++LES+++ LR ++ E
Sbjct: 122 MSQGSGNGVDFDLPDEILSVIPTDPYQQLDLARKITSMAIASRVSSLESDTTRLRQKLLE 301
Query: 60 KDHLIAELQSQLDSLDATLSATADNLHRAEQDKESLINENASL 102
KD LI +L+ ++ SL H A + I EN L
Sbjct: 302 KDRLIVDLEDRVSSLTRA-------SHNAHSALNTAIEENVKL 409
>TC9682 similar to UP|Q8VZC0 (Q8VZC0) DTDP-glucose 4-6-dehydratase-like
protein, partial (29%)
Length = 731
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/75 (37%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
Frame = +1
Query: 160 EASLPPSVSSSVPSISDTGNSFAEDHE-SDAIRPRVPYSLLLASQSTTPRLTPPGSPPSL 218
+ S PS +SSV S+S + +S + S + P P S L TTP LTP S P
Sbjct: 289 DPSPDPSTTSSVNSVSSSSSSESSSAPPSSSSNPLSPASAL-----TTPHLTPTPSSPLP 453
Query: 219 SASVSPTRTSKPVSP 233
S + +P +T+ VSP
Sbjct: 454 SQTSTPPQTASAVSP 498
>TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%)
Length = 514
Score = 38.9 bits (89), Expect = 0.001
Identities = 48/154 (31%), Positives = 68/154 (43%), Gaps = 3/154 (1%)
Frame = +3
Query: 85 LHRAEQDKESLINENASLSNTVRKLN-RDVSKLEVFRKTLMRSLQEEDDNSGGAPDMVAK 143
L + + + ESL + ++S S++ L+ +S L E+ SG P
Sbjct: 36 LQQCQCECESLSSSSSSSSSSSSPLSLNQISPPNAPPS*LSAPPSPEERFSGTPPPPPPA 215
Query: 144 VQSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQ 203
S S+ T T AS PPS S P+ S +S P P S L S
Sbjct: 216 TGSASTATPTPPTSSRSAS-PPSPS---PANSHMASS-----------PPSPTSALSVSV 350
Query: 204 ST-TPRLTPPGSPPS-LSASVSPTRTSKPVSPRR 235
ST +P +PP SPP+ SA+ + +R S PVS RR
Sbjct: 351 STPSPAHSPPTSPPAPRSATSTSSRISSPVSSRR 452
>TC13393 similar to UP|Q9FMU6 (Q9FMU6) Mitochondrial phosphate translocator
(AT5g14040/MUA22_4), partial (8%)
Length = 541
Score = 38.5 bits (88), Expect = 0.002
Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Frame = +1
Query: 148 SSLTSTSQFGDNEASLPPSVSSSVP--------SISDTGNSFAEDHESDAIRPRVPYSLL 199
SS +S Q+G + PPS SS+ P S S + +S P P L
Sbjct: 13 SSSSSPCQWGFRLVN-PPSASSTFPNPPPTRTSSPSSSPHSVPPPSTPSKSFPITPTGSL 189
Query: 200 LASQSTTPRLTPPGSPPSL-----SASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVF 254
A +++ R +PP PSL S+S SPT ++ P +P IS R + D T+
Sbjct: 190 AAPAASSSRTSPPSPAPSLSPNPRSSSSSPTSSASPKTP---MISSPGLRSPNTDSTTP- 357
Query: 255 SSMSSSDS 262
SSM +S S
Sbjct: 358 SSMQASPS 381
>TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein,
partial (30%)
Length = 539
Score = 37.4 bits (85), Expect = 0.004
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +3
Query: 206 TPRLTPPG----SPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSD 261
+P + PG SPPS S S S +R+S P S R ++SR R+ FSS SSS
Sbjct: 93 SPTMAKPGRGRRSPPSGSVSGSSSRSSSPSSSR------SSSRSRSLSRSRSFSSSSSSP 254
Query: 262 SGAGSQT 268
S GS++
Sbjct: 255 SRGGSRS 275
>TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase isolog,
25331-24357 (At1g11090), partial (18%)
Length = 552
Score = 37.0 bits (84), Expect = 0.005
Identities = 36/111 (32%), Positives = 47/111 (41%), Gaps = 5/111 (4%)
Frame = +3
Query: 161 ASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSA 220
++LP + SS PS T S A P P S ST+P P SPP+ SA
Sbjct: 138 STLPTARSSPSPSSPSTPKSKPPSS*PTATAP-TPAGSSRRSASTSPPGATPSSPPTSSA 314
Query: 221 SVSPTRT-----SKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSDSGAGS 266
+ +PT + + SP S S +TS T F SS+ AGS
Sbjct: 315 TAAPTASAATSATSTASPPPRSPSSSTSAAA--SPTPPFRPSSSASPWAGS 461
>TC14775 PIR|S14181|S14181 DNA-directed RNA polymerase largest chain
(isoform B1) - soybean (fragment) {Glycine
max;} , partial (22%)
Length = 848
Score = 36.6 bits (83), Expect = 0.006
Identities = 38/129 (29%), Positives = 56/129 (42%), Gaps = 8/129 (6%)
Frame = +1
Query: 165 PSVSSSVPSISDTGNSFAEDHESDAIRPR-VPYSLLLASQSTTPRLTP--PGSPPS---- 217
P S + PS S T S++ S + P+ YS LA ++PRL+P P SP S
Sbjct: 43 PGYSPTSPSYSPTSPSYSPT--SPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYS 216
Query: 218 -LSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSDSGAGSQTGRTRVDGK 276
S S SPT S S +S S + G+ D + S S + SQ G +
Sbjct: 217 PTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTS 396
Query: 277 EFFRQVRNR 285
++ Q ++
Sbjct: 397 QYTPQTNDK 423
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 36.6 bits (83), Expect = 0.006
Identities = 26/74 (35%), Positives = 34/74 (45%)
Frame = +3
Query: 168 SSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPSLSASVSPTRT 227
+SS P S T + A + P S S+TP TPP S P + + SP+R
Sbjct: 225 TSSTPPTSPTSAAAATSSATPPSPSPPPTSASPPPPSSTPNGTPPSSSP--ATTPSPSRP 398
Query: 228 SKPVSPRRHSISFA 241
S P SP R S+ A
Sbjct: 399 STPSSPTRASLPSA 440
>BI417269
Length = 460
Score = 36.2 bits (82), Expect = 0.008
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +2
Query: 168 SSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTPRLTPPGSPPS------LSAS 221
+S+ S D N +++D D P P + S+ PRL P S L+ +
Sbjct: 11 ASNNSSQMDLINQYSDDQNDDDPNPNPPEAAEKEGDSSPPRLLPARSAAPKVDDTMLALT 190
Query: 222 VSPTRT-SKPVSPRRHSISF 240
V+ +T SKP+ P +H+I+F
Sbjct: 191 VADKKTLSKPIDPTQHAIAF 250
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 35.8 bits (81), Expect = 0.011
Identities = 29/87 (33%), Positives = 41/87 (46%), Gaps = 9/87 (10%)
Frame = +2
Query: 195 PYSLLLASQSTTPRLTP--PGSPPSLSASVSPT----RTSKPVSPRRHSIS---FATSRG 245
P+ L + +T+P +P P SPPS + S SPT T+ P SP S + +S+
Sbjct: 203 PWLLPPQTPTTSPAFSPSTPSSPPSTTTSPSPTSPPRSTNGPQSPSAPSTTPPWTTSSQN 382
Query: 246 MHDDRTSVFSSMSSSDSGAGSQTGRTR 272
H S SS S+S S + TR
Sbjct: 383 THQSPPSRTSSPSTSSSTTSAPRSSTR 463
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 35.8 bits (81), Expect = 0.011
Identities = 42/144 (29%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Frame = -2
Query: 134 SGGAPDMVAKVQSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPR 193
S +P + SL+ F A P S+S S PS S S S A R
Sbjct: 435 SSSSPPSSESSSPEPSLSDLFLFDGTPAFSPSSLSLSSPSSSSGSKSLDASSSSAAATVR 256
Query: 194 -----VPYSLLLASQSTT------------PRLTPPGSPPSLSASVSPTRTSKPVSPRRH 236
VP S +S S++ P PP +PPS S+S S + +S P
Sbjct: 255 RTRYSVPKSSSSSSSSSSSSSSSSSSSGSPPPPRPPSTPPSSSSSSSSSSSSPPPGASSS 76
Query: 237 SISFATSRGMHDDRTSVFSSMSSS 260
S S +S +S SS SSS
Sbjct: 75 SSSSPSS-------SSPSSSSSSS 25
>AV410336
Length = 358
Score = 35.4 bits (80), Expect = 0.014
Identities = 25/88 (28%), Positives = 38/88 (42%), Gaps = 1/88 (1%)
Frame = +1
Query: 151 TSTSQFGDN-EASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQSTTPRL 209
TSTS A PP+ + PS S + H R P + + ++TP
Sbjct: 40 TSTSSTAPPPHAPPPPTPNPKSPSSSSPTPTSPSPHSG---RNSSPATTTFTTSTSTPTP 210
Query: 210 TPPGSPPSLSASVSPTRTSKPVSPRRHS 237
PP S P+ S++ + KP +P +HS
Sbjct: 211 PPPSSLPAASSTAASLLPKKPTAPPQHS 294
>TC10958 similar to PIR|T47938|T47938 RING finger protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (38%)
Length = 779
Score = 34.7 bits (78), Expect = 0.024
Identities = 20/59 (33%), Positives = 31/59 (51%)
Frame = +1
Query: 204 STTPRLTPPGSPPSLSASVSPTRTSKPVSPRRHSISFATSRGMHDDRTSVFSSMSSSDS 262
S++ L+ P SPPS ++S SPT ++ SP H S +H ++S +S S S
Sbjct: 142 SSSSPLSAPPSPPSSASSTSPTSSTPTTSPPPHRTSPTRPPPLHSPQSSSGNSSPSPRS 318
>TC12354 similar to UP|O23702 (O23702) Dehydrogenase, partial (25%)
Length = 488
Score = 34.7 bits (78), Expect = 0.024
Identities = 30/90 (33%), Positives = 36/90 (39%)
Frame = +3
Query: 146 SQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLASQST 205
S S TS S S PP +SSS PS + P S L S S
Sbjct: 81 SPPSSTSLSAVSPMARSSPPPLSSSTPSPTFHA-------------PPSAVSALTTSSSA 221
Query: 206 TPRLTPPGSPPSLSASVSPTRTSKPVSPRR 235
+ T P + PSL S S + TS P +P R
Sbjct: 222 SAPPTAPSTLPSLLTSASASFTSTPHAPMR 311
>TC17747 homologue to UP|Q8WML4 (Q8WML4) MUC1 protein precursor, partial
(4%)
Length = 507
Score = 34.3 bits (77), Expect = 0.031
Identities = 25/77 (32%), Positives = 34/77 (43%), Gaps = 5/77 (6%)
Frame = +2
Query: 202 SQSTTPRLTPPGSPPSLSASVSPTRTS-----KPVSPRRHSISFATSRGMHDDRTSVFSS 256
S S +P + P S P S+ +PT S P S S + G+ R F+
Sbjct: 119 SPSPSPFVPAPTSSPVASSPAAPTPQSWSPGSSPAPSPMGSSSLISHEGVEGGR---FTD 289
Query: 257 MSSSDSGAGSQTGRTRV 273
SS SG+G TGR +V
Sbjct: 290 SDSSSSGSGEMTGRKKV 340
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 34.3 bits (77), Expect = 0.031
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Frame = +2
Query: 142 AKVQSQSSLTSTSQFGDNEASLPPSVSSSVPSISDTGNSFAEDHESDAIRPRVPYSLLLA 201
A SS T + + AS PPS + PS + + +S S + P P S
Sbjct: 212 ASASPASSPTKSPKPSSPSASAPPSSTPLTPSTATSESSPTATSSSSSASPAPPTSFSAL 391
Query: 202 SQ---------STTPRLTPPGSPPS---LSASVSPTRTSKPVS 232
S+ S +P +PP SPPS +S S+S + + S
Sbjct: 392 SRALELKALASSPSPPSSPPPSPPSAICMSTSLSSASSVRSTS 520
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.125 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,326,687
Number of Sequences: 28460
Number of extensions: 57987
Number of successful extensions: 1034
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of query: 339
length of database: 4,897,600
effective HSP length: 91
effective length of query: 248
effective length of database: 2,307,740
effective search space: 572319520
effective search space used: 572319520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0238.4