BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0238.21
(630 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV413186 101 4e-22
AU089102 92 3e-19
BP081623 70 8e-13
BP038410 61 5e-10
BP063629 57 7e-09
AI967878 57 9e-09
AV769479 53 2e-07
TC19836 48 5e-06
BP053476 47 9e-06
AV409405 45 5e-05
BP040806 42 2e-04
BP035488 41 7e-04
TC15322 weakly similar to UP|Q9LG23 (Q9LG23) F14J16.14 (At1g5589... 40 0.001
TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-l... 38 0.006
AV767495 37 0.007
BI418759 37 0.013
AV767789 35 0.036
AV421658 35 0.048
TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, part... 33 0.18
AV779633 32 0.31
>AV413186
Length = 398
Score = 101 bits (251), Expect = 4e-22
Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Frame = +1
Query: 381 NMYAKCGDLEGSALAFCGILEK-DLVSWNSMLFAFGLHGRANEAMCLFREMVASGVKPDE 439
+MY+KCG LE + F + K D+V WN+M+ A HG EAM + +M+ SGV+P+
Sbjct: 4 DMYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNR 183
Query: 440 VTFTGMLMTCSHLGLIDEGFAFFRSMSSEFGLSHGMDHVACMVDMLGRGGYVAEA 494
TF +L CS GL+ EG FF+ M+SEFG+ +H AC+ D+L R GY E+
Sbjct: 184 ATFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGYFDES 348
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/103 (25%), Positives = 41/103 (39%)
Frame = +1
Query: 117 DMYGKCLKPHDARKVFDEMADSNEVTWCSLLFAYANSSLFGMALEVFRSMPERVEIAWNT 176
DMY KC A +VF+ + + +V + WNT
Sbjct: 4 DMYSKCGSLETAWRVFNLVGNKQDV------------------------------VLWNT 93
Query: 177 MIAGHARRGEVEACLGLFKEMCESLYQPDQWTFSALMNACTES 219
MI+ A G + + +M S +P++ TF L+NAC+ S
Sbjct: 94 MISALAHHGFGTEAMVMLNDMIRSGVEPNRATFVVLLNACSLS 222
>AU089102
Length = 480
Score = 92.0 bits (227), Expect = 3e-19
Identities = 51/156 (32%), Positives = 77/156 (48%), Gaps = 4/156 (2%)
Frame = +2
Query: 434 GVKPDEVTFTGMLMTCSHLGLIDEGFAFFRSMSSEFGLSHGMDHVACMVDMLGRGGYVAE 493
G + ++VT+ +L CSH GL+DEG +F + + H AC+VD+ GR G + E
Sbjct: 26 GFQANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEXHYACLVDLCGRAGRLKE 205
Query: 494 A----QSLAKKYSKTSGARTNSYEVLLGACHAHGDLGTGSSVGEYLKTLEPEKEVGYVML 549
+ L K S + + LL C+ HG+ G V + +E E Y +L
Sbjct: 206 XFYIIEGLGVKLS------LSVWGPLLAGCNVHGNADIGKLVTTKILKVEHENAGTYSLL 367
Query: 550 SNLYCASGQWKEAEIVRKEMLDQGVKKVPGSSWIEI 585
SN+Y + WK V +M D+G+KK P WIE+
Sbjct: 368 SNMYASXRXWKXXAPVXMKMNDKGLKKQPRCXWIEV 475
>BP081623
Length = 461
Score = 70.5 bits (171), Expect = 8e-13
Identities = 34/90 (37%), Positives = 53/90 (58%)
Frame = -2
Query: 515 LLGACHAHGDLGTGSSVGEYLKTLEPEKEVGYVMLSNLYCASGQWKEAEIVRKEMLDQGV 574
LLGAC +GD+G G E+L L+P+ Y++L+N+Y +W +A VR+ M +G
Sbjct: 448 LLGACRIYGDVGLGRWAAEHLFELKPQHCGYYILLANMYAEIERWDDANKVRQLMKSRGA 269
Query: 575 KKVPGSSWIEIRNVVTAFVSGNNSSPYMAD 604
KK PG SW+++ + + AF+ G AD
Sbjct: 268 KKNPGCSWVKVGDKMHAFLVGEKIESLDAD 179
>BP038410
Length = 468
Score = 61.2 bits (147), Expect = 5e-10
Identities = 30/91 (32%), Positives = 52/91 (56%)
Frame = -2
Query: 357 GKMVHSCIIRRGLDKYLFVGNSLVNMYAKCGDLEGSALAFCGILEKDLVSWNSMLFAFGL 416
GK +H I+ G +L V +L++MYAK G + F +++KD+V WN ++ +
Sbjct: 278 GKSLHGYYIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYAR 99
Query: 417 HGRANEAMCLFREMVASGVKPDEVTFTGMLM 447
+G EA+ L ++M G+K + TF G+L+
Sbjct: 98 NGLVGEALYLLQKMRIQGMKTNSSTFVGLLL 6
Score = 55.8 bits (133), Expect = 2e-08
Identities = 38/129 (29%), Positives = 55/129 (42%)
Frame = -2
Query: 38 DSVAWNAMITAYSHLGLYQQSLSLFGSMRISNSKPDSFSYSAALSACAGGSHHGFGSVIH 97
D V+WN++ LF M S + + L A + G +H
Sbjct: 404 DLVSWNSVF-------------DLFTKMCWSGLIASASTVLILLPAAGDTGNFVVGKSLH 264
Query: 98 ALVVVSGYRSSLPVANSLIDMYGKCLKPHDARKVFDEMADSNEVTWCSLLFAYANSSLFG 157
+ G+ S L V +LIDMY K H RK+FD + D + V W L+ YA + L G
Sbjct: 263 GYYIQIGFSSHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVG 84
Query: 158 MALEVFRSM 166
AL + + M
Sbjct: 83 EALYLLQKM 57
Score = 50.8 bits (120), Expect = 6e-07
Identities = 28/78 (35%), Positives = 43/78 (54%)
Frame = -2
Query: 6 SYLFQTTSKIVSLARSGRICHARKLFDEMPDRDSVAWNAMITAYSHLGLYQQSLSLFGSM 65
S+L T+ I A++G + RK+FD + D+D V WN +I Y+ GL ++L L M
Sbjct: 236 SHLNVLTALIDMYAKTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVGEALYLLQKM 57
Query: 66 RISNSKPDSFSYSAALSA 83
RI K +S ++ L A
Sbjct: 56 RIQGMKTNSSTFVGLLLA 3
Score = 46.6 bits (109), Expect = 1e-05
Identities = 31/120 (25%), Positives = 58/120 (47%)
Frame = -2
Query: 193 LFKEMCESLYQPDQWTFSALMNACTESRDMLYGCMVHGFVIKSGWSSAMEVKNSILSFYA 252
LF +MC S T L+ A ++ + + G +HG+ I+ G+SS + V +++ YA
Sbjct: 374 LFTKMCWSGLIASASTVLILLPAAGDTGNFVVGKSLHGYYIQIGFSSHLNVLTALIDMYA 195
Query: 253 KLECPSDAMEMFNSFGAFNQVSWNAIIDAHMKLGDTQKAFLAFQQAPDKNIVSWTSMIVG 312
K ++F+S + V WN +I + + G +A Q+ + + + +S VG
Sbjct: 194 KTGLVHWGRKIFDSLVDKDVVLWNCLIGNYARNGLVGEALYLLQKMRIQGMKTNSSTFVG 15
>BP063629
Length = 525
Score = 57.4 bits (137), Expect = 7e-09
Identities = 33/111 (29%), Positives = 58/111 (51%), Gaps = 3/111 (2%)
Frame = +1
Query: 11 TTSKIVSLARS---GRICHARKLFDEMPDRDSVAWNAMITAYSHLGLYQQSLSLFGSMRI 67
T +K+++++ G +A ++FD + +N MI A++ G +++++SLF +R
Sbjct: 193 TLNKLMAISTDSSIGDFHYALRIFDHIQQPSLFNYNVMIKAFAKKGSFRRAISLFQQLRE 372
Query: 68 SNSKPDSFSYSAALSACAGGSHHGFGSVIHALVVVSGYRSSLPVANSLIDM 118
PD+++Y L A G G +HA V+ SG V NSL+DM
Sbjct: 373 DGVWPDNYTYPYVLKAIGCLGDVGQGRKVHAFVIKSGLEFDAYVCNSLMDM 525
Score = 51.2 bits (121), Expect = 5e-07
Identities = 28/104 (26%), Positives = 50/104 (47%)
Frame = +1
Query: 279 IDAHMKLGDTQKAFLAFQQAPDKNIVSWTSMIVGYTRNGNGELALSMFLDMTRNSIQLDN 338
I +GD A F ++ ++ MI + + G+ A+S+F + + + DN
Sbjct: 214 ISTDSSIGDFHYALRIFDHIQQPSLFNYNVMIKAFAKKGSFRRAISLFQQLREDGVWPDN 393
Query: 339 LVAGAVLHACASLAILAHGKMVHSCIIRRGLDKYLFVGNSLVNM 382
VL A L + G+ VH+ +I+ GL+ +V NSL++M
Sbjct: 394 YTYPYVLKAIGCLGDVGQGRKVHAFVIKSGLEFDAYVCNSLMDM 525
Score = 50.8 bits (120), Expect = 6e-07
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Frame = +1
Query: 118 MYGKCLKPHDARKVFDEMADSNEVTWCS-----------LLFAYANSSL--FGMALEVFR 164
M G C+ + K E+ + +CS L+ +SS+ F AL +F
Sbjct: 88 MKGTCISLLKSCKSMCELKQIQALIFCSGLQQDRDTLNKLMAISTDSSIGDFHYALRIFD 267
Query: 165 SMPERVEIAWNTMIAGHARRGEVEACLGLFKEMCESLYQPDQWTFSALMNACTESRDMLY 224
+ + +N MI A++G + LF+++ E PD +T+ ++ A D+
Sbjct: 268 HIQQPSLFNYNVMIKAFAKKGSFRRAISLFQQLREDGVWPDNYTYPYVLKAIGCLGDVGQ 447
Query: 225 GCMVHGFVIKSGWSSAMEVKNSIL 248
G VH FVIKSG V NS++
Sbjct: 448 GRKVHAFVIKSGLEFDAYVCNSLM 519
>AI967878
Length = 393
Score = 57.0 bits (136), Expect = 9e-09
Identities = 30/90 (33%), Positives = 45/90 (49%), Gaps = 20/90 (22%)
Frame = +1
Query: 402 KDLVSWNSMLFAFGLHGRANEAMCLFREMVASG--------------------VKPDEVT 441
++LVSWN+M+ +HG + + LF EMV + PDEVT
Sbjct: 31 RNLVSWNAMILGHCIHGNPEDGLSLFDEMVGMDKVKGEVEIDESPCADRGVVRLPPDEVT 210
Query: 442 FTGMLMTCSHLGLIDEGFAFFRSMSSEFGL 471
F G+L C+ L+ EG ++F+ M+ FGL
Sbjct: 211 FIGILCACARAELLAEGRSYFKQMTDVFGL 300
Score = 37.4 bits (85), Expect = 0.007
Identities = 22/79 (27%), Positives = 38/79 (47%), Gaps = 20/79 (25%)
Frame = +1
Query: 300 DKNIVSWTSMIVGYTRNGNGELALSMF-----LDMTRNSIQLDNLVAG------------ 342
++N+VSW +MI+G+ +GN E LS+F +D + +++D
Sbjct: 28 NRNLVSWNAMILGHCIHGNPEDGLSLFDEMVGMDKVKGEVEIDESPCADRGVVRLPPDEV 207
Query: 343 ---AVLHACASLAILAHGK 358
+L ACA +LA G+
Sbjct: 208 TFIGILCACARAELLAEGR 264
Score = 30.4 bits (67), Expect = 0.90
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 172 IAWNTMIAGHARRGEVEACLGLFKEM 197
++WN MI GH G E L LF EM
Sbjct: 40 VSWNAMILGHCIHGNPEDGLSLFDEM 117
Score = 28.5 bits (62), Expect = 3.4
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 24/114 (21%)
Frame = +1
Query: 36 DRDSVAWNAMITAYSHLGLYQQSLSLF----------GSMRISNS----------KPDSF 75
+R+ V+WNAMI + G + LSLF G + I S PD
Sbjct: 28 NRNLVSWNAMILGHCIHGNPEDGLSLFDEMVGMDKVKGEVEIDESPCADRGVVRLPPDEV 207
Query: 76 SYSAALSACAGGSHHGFG-SVIHALVVVSGYRSSLPVANS---LIDMYGKCLKP 125
++ L ACA G S + V G + L + + + M+G +KP
Sbjct: 208 TFIGILCACARAELLAEGRSYFKQMTDVFGLKPILLIYGAWPICLQMHGLLMKP 369
>AV769479
Length = 287
Score = 52.8 bits (125), Expect = 2e-07
Identities = 25/90 (27%), Positives = 49/90 (53%)
Frame = +1
Query: 345 LHACASLAILAHGKMVHSCIIRRGLDKYLFVGNSLVNMYAKCGDLEGSALAFCGILEKDL 404
++ C+ LA GK +H+ I++ + L N+ VN YA+CG + + F + ++D+
Sbjct: 16 MNLCSKRVDLALGKQIHAHILKSKW-RNLIADNAFVNFYAECGKISSAFRTFDRMAKRDV 192
Query: 405 VSWNSMLFAFGLHGRANEAMCLFREMVASG 434
V W +++ A G +EA+ + +M+ G
Sbjct: 193 VCWTTIITACSQQGLGHEALLILSQMLGDG 282
Score = 45.1 bits (105), Expect = 4e-05
Identities = 25/85 (29%), Positives = 41/85 (47%)
Frame = +1
Query: 213 MNACTESRDMLYGCMVHGFVIKSGWSSAMEVKNSILSFYAKLECPSDAMEMFNSFGAFNQ 272
MN C++ D+ G +H ++KS W + + N+ ++FYA+ S A F+ +
Sbjct: 16 MNLCSKRVDLALGKQIHAHILKSKWRNLI-ADNAFVNFYAECGKISSAFRTFDRMAKRDV 192
Query: 273 VSWNAIIDAHMKLGDTQKAFLAFQQ 297
V W II A + G +A L Q
Sbjct: 193 VCWTTIITACSQQGLGHEALLILSQ 267
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/47 (40%), Positives = 25/47 (52%)
Frame = +1
Query: 19 ARSGRICHARKLFDEMPDRDSVAWNAMITAYSHLGLYQQSLSLFGSM 65
A G+I A + FD M RD V W +ITA S GL ++L + M
Sbjct: 130 AECGKISSAFRTFDRMAKRDVVCWTTIITACSQQGLGHEALLILSQM 270
>TC19836
Length = 464
Score = 47.8 bits (112), Expect = 5e-06
Identities = 27/79 (34%), Positives = 36/79 (45%)
Frame = +2
Query: 509 TNSYEVLLGACHAHGDLGTGSSVGEYLKTLEPEKEVGYVMLSNLYCASGQWKEAEIVRKE 568
T + L+ AC HG L +G L EP+ Y +L+ +Y G W E V +
Sbjct: 26 TRIWSSLVSACKLHGRLDIAEMLGPQLIRSEPDNAANYTLLNMIYAEHGHWLHKEQVMEA 205
Query: 569 MLDQGVKKVPGSSWIEIRN 587
M Q +KK G S IE N
Sbjct: 206 MKLQRLKKCYGFSRIETGN 262
>BP053476
Length = 514
Score = 47.0 bits (110), Expect = 9e-06
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = -3
Query: 559 WKEAEIVRKEMLDQGVKKVPGSSWIEIRNVVTAFVSGNNSSPYMADISNIL 609
W + + +RK ML GVKK PG S +E+ N V F G+ S P D+ +L
Sbjct: 512 WTDVQTIRKSMLQDGVKKTPGYSLVELANRVYEFTLGDRSHPQSQDVYALL 360
>AV409405
Length = 424
Score = 44.7 bits (104), Expect = 5e-05
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +1
Query: 9 FQTTSKIVSLARSGRICHARKLFDEMPDRDSVAWNAMITAYSHLGLYQQSLSLFGSM 65
F T V + I HA KLFDE PD+ WNA++ Y G + ++LSLF M
Sbjct: 244 FIVTKLNVLYGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAEGEWAETLSLFRRM 414
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/73 (31%), Positives = 33/73 (44%)
Frame = +1
Query: 94 SVIHALVVVSGYRSSLPVANSLIDMYGKCLKPHDARKVFDEMADSNEVTWCSLLFAYANS 153
S +H+L + G + L +YGK H A K+FDE D + W +LL Y
Sbjct: 196 SQLHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAE 375
Query: 154 SLFGMALEVFRSM 166
+ L +FR M
Sbjct: 376 GEWAETLSLFRRM 414
Score = 34.7 bits (78), Expect = 0.048
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +1
Query: 360 VHSCIIRRGLDKYLFVGNSLVNMYAKCGDLEGSALAFCGILEKDLVSWNSMLFAFGLHGR 419
+HS ++ GL F+ L +Y K + + F +K + WN++L + G
Sbjct: 202 LHSLCLKLGLTHDSFIVTKLNVLYGKHASIHHAHKLFDETPDKSVYLWNALLRRYRAEGE 381
Query: 420 ANEAMCLFREMVAS 433
E + LFR M A+
Sbjct: 382 WAETLSLFRRMHAT 423
>BP040806
Length = 534
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Frame = +1
Query: 16 VSLARSGRICHARKLF----DEMPDRDSVAWNAMITAYSHLGLYQQSLSLFGSMRISN-S 70
V L +SG+ AR+LF +E D + A++ AY L ++ S+ M+
Sbjct: 112 VLLGKSGQPHRARQLFTTMIEEGCDPSPETYTALLAAYCRSNLLDEAFSILNEMKNHPLC 291
Query: 71 KPDSFSYSAALSACAGGSHHGFGSVIHALVVVSGYRSSLPVANSLIDMYGKCLKPHDARK 130
+PD F+YS + C +++ + + N ++ YGK K K
Sbjct: 292 QPDVFTYSTLIKPCVDAFKFDLVELLYEDMAARSIMPNTVTQNIVLSGYGKAGKFDQMEK 471
Query: 131 VFDEMADS 138
V M +S
Sbjct: 472 VLSSMLES 495
Score = 33.9 bits (76), Expect = 0.081
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 415 GLHGRANEAMCLFREMVASGVKPDEVTFTGMLMTCSHLGLIDEGFAFFRSMSS 467
G G+ + A LF M+ G P T+T +L L+DE F+ M +
Sbjct: 121 GKSGQPHRARQLFTTMIEEGCDPSPETYTALLAAYCRSNLLDEAFSILNEMKN 279
>BP035488
Length = 534
Score = 40.8 bits (94), Expect = 7e-04
Identities = 23/81 (28%), Positives = 43/81 (52%)
Frame = +3
Query: 400 LEKDLVSWNSMLFAFGLHGRANEAMCLFREMVASGVKPDEVTFTGMLMTCSHLGLIDEGF 459
L +D+ +WN +L + + G A+EA ++++++AS +PD T+ + + G +
Sbjct: 57 LHRDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTKKGKLGTAL 236
Query: 460 AFFRSMSSEFGLSHGMDHVAC 480
FR M +E G + D V C
Sbjct: 237 KLFRGMWNE-GCNCKPDVVIC 296
Score = 30.8 bits (68), Expect = 0.69
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Frame = +3
Query: 37 RDSVAWNAMITAYSHLGLYQQSLSLFGSMRISNSKPDSFSYSAALSACAGGSHHGFGSVI 96
RD WN ++ + LG ++ ++ + S +PD F+Y+ + A G +
Sbjct: 63 RDIKTWNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTKKGKLGTALKL 242
Query: 97 HALVVVSG--YRSSLPVANSLIDMYGKCLKPHDARKVFDEM----ADSNEVTWCSLL 147
+ G + + + N +ID + +A +VF +M + N T+ SL+
Sbjct: 243 FRGMWNEGCNCKPDVVICNCIIDALCFKKRVPEALEVFQDMKERGCEPNVATYNSLI 413
Score = 26.9 bits (58), Expect = 9.9
Identities = 11/45 (24%), Positives = 23/45 (50%)
Frame = +3
Query: 174 WNTMIAGHARRGEVEACLGLFKEMCESLYQPDQWTFSALMNACTE 218
WN ++ G G ++K++ S +PD +T++ + A T+
Sbjct: 78 WNVILNGWCVLGNAHEAKRVWKDIMASKCRPDLFTYATFIKALTK 212
>TC15322 weakly similar to UP|Q9LG23 (Q9LG23) F14J16.14
(At1g55890/F14J16_4), partial (33%)
Length = 588
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Frame = +2
Query: 115 LIDMYGKCLKPHDARKVFDEMADSN----EVTWCSLLFAYANSSLFGMALEVFRSMPERV 170
LI +YGK P AR++FDEM + N +++ +LL AY +S + + +F+ +P +
Sbjct: 359 LITLYGKSGMPKRARQMFDEMPERNCTRTVLSFNALLAAYLHSKQYRVVERIFKEVPGEI 538
Query: 171 E-----IAWNTMI 178
+++NT+I
Sbjct: 539 SVKPDLVSYNTVI 577
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Frame = +2
Query: 12 TSKIVSL-ARSGRICHARKLFDEMPDRDS----VAWNAMITAYSHLGLYQQSLSLFGSMR 66
++++++L +SG AR++FDEMP+R+ +++NA++ AY H Y+ +F +
Sbjct: 350 SARLITLYGKSGMPKRARQMFDEMPERNCTRTVLSFNALLAAYLHSKQYRVVERIFKEVP 529
Query: 67 ISNS-KPDSFSYSAALSA 83
S KPD SY+ + A
Sbjct: 530 GEISVKPDLVSYNTVIKA 583
>TC20002 similar to UP|Q9FJY7 (Q9FJY7) Selenium-binding protein-like,
partial (4%)
Length = 560
Score = 37.7 bits (86), Expect = 0.006
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = -3
Query: 356 HGKMVHSCIIRRGLDK-YLFVGNSLV--NMYAKCGDLEGSALAFCGILEKDLVSWNSMLF 412
H K +H+ I + G + +L VG +V + GD+ + F + + D WN+M+
Sbjct: 309 HLKEIHARIYQTGFHQNHLVVGKIIVFCAVSVPAGDMNYAVSVFDRVDKPDAFLWNTMIR 130
Query: 413 AFGLHGRANEAMCLFREMVAS--GVKPDEVTFTGMLMTCSHLG 453
FG + +A+ ++ M V PD TF+ +L LG
Sbjct: 129 GFGNTNQPEKAVLFYKRMQQGEPHVVPDTFTFSFLLKIVGGLG 1
Score = 30.8 bits (68), Expect = 0.69
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 159 ALEVFRSMPERVEIAWNTMIAGHARRGEVEACLGLFKEM--CESLYQPDQWTFSALM 213
A+ VF + + WNTMI G + E + +K M E PD +TFS L+
Sbjct: 192 AVSVFDRVDKPDAFLWNTMIRGFGNTNQPEKAVLFYKRMQQGEPHVVPDTFTFSFLL 22
Score = 30.8 bits (68), Expect = 0.69
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -3
Query: 21 SGRICHARKLFDEMPDRDSVAWNAMITAYSHLGLYQQSLSLFGSMRISNSK--PDSFSYS 78
+G + +A +FD + D+ WN MI + + ++++ + M+ PD+F++S
Sbjct: 210 AGDMNYAVSVFDRVDKPDAFLWNTMIRGFGNTNQPEKAVLFYKRMQQGEPHVVPDTFTFS 31
Query: 79 AALSACAG 86
L G
Sbjct: 30 FLLKIVGG 7
>AV767495
Length = 586
Score = 37.4 bits (85), Expect = 0.007
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 2/150 (1%)
Frame = +2
Query: 73 DSFSYSAALSACAGGSHHGFGSVIHALVVVSGYRSSLPVANSLIDMYGKCLKPHDARKVF 132
D YSA + A V+ ++ G R ++ NS+ID +G+
Sbjct: 26 DVVFYSALIDALCKNGLVESSMVLLDAMIEKGIRPNVVTYNSIIDAFGQLSALECGVDTS 205
Query: 133 DEMADSNEVTWCSLLFAYANSSL-FGMALEVFRSMPERVEIAWNTMIAGHARRGEVEAC- 190
+ + V S+L A +L G + M E++ + I R + + C
Sbjct: 206 VQANEHRVVPSSSMLIDGALQNLAIGKEDDRIMKMFEQLAAEKSGQIKKDMRGSQDKFCI 385
Query: 191 LGLFKEMCESLYQPDQWTFSALMNACTESR 220
L LF++M E +P+ TFSA++NAC+ +
Sbjct: 386 LWLFRKMHEMEIKPNVVTFSAILNACSNCK 475
Score = 30.8 bits (68), Expect = 0.69
Identities = 15/54 (27%), Positives = 29/54 (52%), Gaps = 4/54 (7%)
Frame = +2
Query: 426 LFREMVASGVKPDEVTFTGMLMTCSHLGLIDEGFAFFRSM----SSEFGLSHGM 475
LFR+M +KP+ VTF+ +L CS+ ++ + + +G++HG+
Sbjct: 392 LFRKMHEMEIKPNVVTFSAILNACSNCKSFEDASKLLDELRLFDNQVYGVAHGL 553
>BI418759
Length = 543
Score = 36.6 bits (83), Expect = 0.013
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Frame = +2
Query: 18 LARSGRICHARKLFDEMPDR---------DSVAWNAMITAYSHLGLYQQSLSLFGSMRI- 67
L + G+ A LFD+M D +S +N M+ +LG + ++L+ F
Sbjct: 143 LLKHGKKTQAWALFDQMLDNHTPPNFQAVNSDTFNIMVNECFNLGKFHEALATFRKAGTK 322
Query: 68 SNSKP---DSFSYSAALSACAGGSHHGFGSVIHALVVVSGYRSSLPVANSLIDMYGKCLK 124
SNSK D Y+ +S + + +P +LID Y K +
Sbjct: 323 SNSKAFAMDVAGYNNIISRFCENGLLSEAETLFEELCSKSLSPDVPTHRTLIDAYMKMER 502
Query: 125 PHDARKVFDEMAD 137
DA KVF M D
Sbjct: 503 IDDALKVFHRMVD 541
Score = 30.0 bits (66), Expect = 1.2
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Frame = +2
Query: 113 NSLIDMYGKCLKPHDARKVFDEMADS---------NEVTWCSLLFAYANSSLFGMALEVF 163
N L+++ K K A +FD+M D+ N T+ ++ N F AL F
Sbjct: 125 NVLLEVLLKHGKKTQAWALFDQMLDNHTPPNFQAVNSDTFNIMVNECFNLGKFHEALATF 304
Query: 164 RSMPER-------VEIA-WNTMIAGHARRGEVEACLGLFKEMCESLYQPDQWTFSALMNA 215
R + +++A +N +I+ G + LF+E+C PD T L++A
Sbjct: 305 RKAGTKSNSKAFAMDVAGYNNIISRFCENGLLSEAETLFEELCSKSLSPDVPTHRTLIDA 484
>AV767789
Length = 560
Score = 35.0 bits (79), Expect = 0.036
Identities = 20/65 (30%), Positives = 31/65 (46%)
Frame = -1
Query: 172 IAWNTMIAGHARRGEVEACLGLFKEMCESLYQPDQWTFSALMNACTESRDMLYGCMVHGF 231
+ +N ++ +AR G+ L KEM +PD T+S ++ A RD H
Sbjct: 494 MTYNMLMNAYARGGQHSKLPQLLKEMAALNLKPDSVTYSTMIYAFVRVRDFRRAFFYHKQ 315
Query: 232 VIKSG 236
+IKSG
Sbjct: 314 MIKSG 300
>AV421658
Length = 281
Score = 34.7 bits (78), Expect = 0.048
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +1
Query: 367 RGLDKYLFVGNSLVNMYAKCG--DLEGS-----ALAFCGILEKDLVSWNSMLFAFGLHGR 419
R L + N+L++ + K DLE + + GIL D ++ ++ L R
Sbjct: 16 RDLSPDVVTYNTLISKFCKLKEPDLEKAFEMKAEMVHKGILP-DADTYEPLIRTLCLQQR 192
Query: 420 ANEAMCLFREMVASGVKPDEVTFTGML 446
+EA LFREM+ GV P+ T+TG++
Sbjct: 193 LSEAYDLFREMLRWGVSPNNETYTGLM 273
>TC13348 weakly similar to UP|Q9LUJ4 (Q9LUJ4) Gb|AAF26800.1, partial (7%)
Length = 539
Score = 32.7 bits (73), Expect = 0.18
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 172 IAWNTMIAGHARRGEVEACLGLFKEMCESLYQPDQWTFSALMNACTESRDM 222
+ +NTMI+ E L L KEM E PD T+ L+ C + + M
Sbjct: 39 VTYNTMISTACAHSREETALRLLKEMEERSCTPDLETYHPLLKMCCKKKRM 191
>AV779633
Length = 440
Score = 32.0 bits (71), Expect = 0.31
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 25/135 (18%)
Frame = -2
Query: 329 MTRNSIQLDNLVAGAVLHACASLAILAHGKMVHSCIIRRGLDKYLFVGNSLVNMYAKCGD 388
+ R+ I L+ L+ G + A L A M +S + G+ + NSL+ + K GD
Sbjct: 427 IARDVIGLNTLIDG---YCEAGLMSQALALMENSW--KTGVKPDIVSYNSLLKGFCKAGD 263
Query: 389 LEGSALAFCGIL--EKD-----------------------LVSWNSMLFAFGLHGRANEA 423
L + F IL ++D L ++ +++ A+G H E+
Sbjct: 262 LVRAESLFDEILGFQRDGESGQLKNNAVDTRDELRNIRPTLATYTTLISAYGKHCGIEES 83
Query: 424 MCLFREMVASGVKPD 438
L+ +MV SG+ PD
Sbjct: 82 RSLYEQMVMSGIMPD 38
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,667,221
Number of Sequences: 28460
Number of extensions: 142864
Number of successful extensions: 638
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of query: 630
length of database: 4,897,600
effective HSP length: 96
effective length of query: 534
effective length of database: 2,165,440
effective search space: 1156344960
effective search space used: 1156344960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0238.21