TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.3
         (508 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15620 similar to UP|Q940X9 (Q940X9) AT5g21160/T10F18_190 (Prol...    28  3.5

>TC15620 similar to UP|Q940X9 (Q940X9) AT5g21160/T10F18_190 (Proline-rich
           protein family), partial (19%)
          Length = 1063

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 5/48 (10%)
 Frame = -1

Query: 349 AYDASSF-EADFRKYFTMFLELKHYR----SSFSPYSKATRGSFWLRN 391
           AY+ S+F  + F ++F++  +    R    S+FS      +GSFWLRN
Sbjct: 550 AYNHSTFWVSSFTRFFSLARKSSKLRYSSLSNFSSSGCLCKGSFWLRN 407


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,788,013
Number of Sequences: 28460
Number of extensions: 138125
Number of successful extensions: 691
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of query: 508
length of database: 4,897,600
effective HSP length: 94
effective length of query: 414
effective length of database: 2,222,360
effective search space: 920057040
effective search space used: 920057040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)