TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.14
         (1754 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP063554                                                              317  1e-86
TC14295 similar to UP|O03990 (O03990) RAD23, isoform I, partial ...    30  3.3
TC19185 similar to UP|Q9LJF4 (Q9LJF4) Emb|CAB87904.1, partial (14%)    30  4.3
TC14297 similar to UP|Q9STA6 (Q9STA6) RAD23 protein, partial (81%)     29  5.6
TC13600 similar to GB|AAD55277.1|5882724|F25A4 F25A4.4 {Arabidop...    25  5.9
BP042815                                                               29  7.3
BI418377                                                               28  9.6
TC18534 similar to UP|Q8L431 (Q8L431) Proline transport protein-...    28  9.6

>BP063554 
          Length = 526

 Score =  317 bits (812), Expect = 1e-86
 Identities = 157/159 (98%), Positives = 157/159 (98%)
 Frame = -3

Query: 593 RFGDQFSPMLIDQNDLWSLSDSTIIRMPLSSDCLKVGHDVASNRIKHITDVFMEHGSRTL 652
           RFGD FSPMLIDQNDLWSLSDSTIIRMPLSSDCLKVGHDVASNRIKHITDVFMEHGSRTL
Sbjct: 524 RFGDPFSPMLIDQNDLWSLSDSTIIRMPLSSDCLKVGHDVASNRIKHITDVFMEHGSRTL 345

Query: 653 LFLKSVLQVSISTWEEGHSHPCQNFSISIDPSSSIMRNPFSEKKWRKFQLSRLFSSSNTA 712
           LFLKSVLQVSISTWEEGHSHPCQNFSISIDPSSSIMRNPFSEKKWRKFQLSRLFSSSNTA
Sbjct: 344 LFLKSVLQVSISTWEEGHSHPCQNFSISIDPSSSIMRNPFSEKKWRKFQLSRLFSSSNTA 165

Query: 713 IKMHVIDVSLYSEGTTFIDRWLLALSLGSGQTRNMALDR 751
           IKMHVIDVSLYSEGTTFIDRWLLALSLGSGQ RNMALDR
Sbjct: 164 IKMHVIDVSLYSEGTTFIDRWLLALSLGSGQPRNMALDR 48


>TC14295 similar to UP|O03990 (O03990) RAD23, isoform I, partial (29%)
          Length = 622

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +1

Query: 969  SLLPGTVCSFVKEHYPVFSVPWELVTEIQVVGFSV--REVRPKMVRDLLKVSSKPIVL-R 1025
            S+LP + C F+K  +    +PW  +  +++V   +    VR ++V+DLL      + L +
Sbjct: 241  SILPRSKCLFIKGKFLRMVLPWRKIK*LKIVSL*L*FPRVRLRLVKDLLLQLHLQLRLHK 420

Query: 1026 SVDMYIDVLEYCLSNFQ 1042
             V + +  L +C  +FQ
Sbjct: 421  QVQLLLQTL-WCQCHFQ 468


>TC19185 similar to UP|Q9LJF4 (Q9LJF4) Emb|CAB87904.1, partial (14%)
          Length = 533

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 369 LFEPFDSPLWIPDTFGVLMHAGDLVYNDAPWLENSSLIGR----HFVHPS 414
           +F  F   + +P+ +  L+H  DLV    PWL    L+G     HF  PS
Sbjct: 207 IFLSFSHAIGVPNYYCFLLHPHDLV--PPPWLPKQELLGTFPSFHFSFPS 64


>TC14297 similar to UP|Q9STA6 (Q9STA6) RAD23 protein, partial (81%)
          Length = 1472

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
 Frame = +3

Query: 969  SLLPGTVCSFVKEHYPVFSVPWELVTEIQVVGFSV--REVRPKMVRDLL 1015
            S+LP + C F+K  +    +PW  +  +++V   +    VR ++V+DLL
Sbjct: 237  SILPRSKCLFIKGKFLRMVLPWRKIK*LKIVSL*L*FPRVRLRLVKDLL 383


>TC13600 similar to GB|AAD55277.1|5882724|F25A4 F25A4.4 {Arabidopsis
           thaliana;}, partial (48%)
          Length = 573

 Score = 24.6 bits (52), Expect(2) = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 793 INLPVTVLGCFLVCH 807
           +N  V +LGC LVCH
Sbjct: 325 LNCQVALLGCNLVCH 369



 Score = 22.7 bits (47), Expect(2) = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 754 LAYNLTPVAGIAALISRNGH 773
           L  ++ P+AGI A++S  GH
Sbjct: 171 LRLHVVPLAGILAVVSGAGH 230


>BP042815 
          Length = 526

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 995  EIQVVGFSVREVRPKMVRDLLKVSSKPIVLRSVDMYIDVLEYCLSNFQQSVPSSLPRDSA 1054
            E++V G   RE   K   + LK+  +   LRSVD + D ++  + N +  V S++     
Sbjct: 166  EVRVSGSKKRE---KEKEENLKLPFEK--LRSVDEFFDEIDLVIGNLKSDVQSAIRNKKI 330

Query: 1055 QVD 1057
            QVD
Sbjct: 331  QVD 339


>BI418377 
          Length = 373

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 482 IYDKREHPRQSLLQHNLGEFQGPALVAIFEGACLSREEFS-NFQLLPPWKLRGNTLNYGL 540
           +YD  + PR+ L     G+      + +   AC SR   + + + L P  LR + L +GL
Sbjct: 115 VYDSGQQPRRRLAGGETGDEFSAVSMVLIA*ACASRSRHAHDHRPLGPVGLRPHGLAFGL 294

Query: 541 -GLVGC 545
            G  GC
Sbjct: 295 SGSAGC 312


>TC18534 similar to UP|Q8L431 (Q8L431) Proline transport protein-like, partial
            (10%)
          Length = 906

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 1679 FSNNFCDLLGKIAFVPSELGFPSVGCKRVIGKNGGEDTLA-HW 1720
            F  +F +LLG    VP    FPS+   +V GK    +  A HW
Sbjct: 442  FMGDFVNLLGSFTLVPLTFMFPSMVFIKVKGKTARAEKKAWHW 314


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,006,484
Number of Sequences: 28460
Number of extensions: 496481
Number of successful extensions: 2317
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2317
length of query: 1754
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1651
effective length of database: 1,966,220
effective search space: 3246229220
effective search space used: 3246229220
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)