TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.12
         (2349 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP063554                                                               44  2e-04
TC15821 similar to UP|ENPL_CATRO (P35016) Endoplasmin homolog pr...    33  0.51
TC7901 homologue to UP|UPT2_SOLTU (Q8RU27) Alpha-1,4-glucan-prot...    31  1.9
BP054593                                                               30  3.3
TC9722 similar to UP|Q9LVD9 (Q9LVD9) Gb|AAC28507.1, partial (16%)      30  4.3
BP053815                                                               29  7.4
BP041404                                                               29  7.4
AV428070                                                               29  7.4

>BP063554 
          Length = 526

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 41/163 (25%), Positives = 67/163 (40%), Gaps = 7/163 (4%)
 Frame = -3

Query: 169 YKDQFSPYCAFGCDMQSPFAGTLFRFPLRNADQASRSKLSRQAYTPEDISSMFVQLFEEG 228
           + D FSP      D+ S    T+ R PL +        ++      + I+ +F+   E G
Sbjct: 521 FGDPFSPMLIDQNDLWSLSDSTIIRMPLSSDCLKVGHDVASNRI--KHITDVFM---EHG 357

Query: 229 VLTLLFLKSVLCIEMYVWDAGEPKPKKIHSCSVSSVS-------DDTIWHRQALLRLSKS 281
             TLLFLKSVL + +  W+ G   P +  S S+   S        +  W +  L RL  S
Sbjct: 356 SRTLLFLKSVLQVSISTWEEGHSHPCQNFSISIDPSSSIMRNPFSEKKWRKFQLSRLFSS 177

Query: 282 LNTTTEVDAFPLEFVTEAVRGVETVRQVDRFYIVQTMASASSR 324
            NT  ++    +   +E          +DR+ +  ++ S   R
Sbjct: 176 SNTAIKMHVIDVSLYSEG------TTFIDRWLLALSLGSGQPR 66


>TC15821 similar to UP|ENPL_CATRO (P35016) Endoplasmin homolog precursor
           (GRP94 homolog), partial (32%)
          Length = 870

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
 Frame = +1

Query: 23  RIREVLLN--YPEGTTVLKELIQNADDAGATTVSLCLDRRSHAGD---SLLSSSLSQWQG 77
           R+ ++++N  Y      L+ELI NA DA      L L  +   G+   + L   +   + 
Sbjct: 292 RLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLDIQIKLDKE 471

Query: 78  PALLAYNDAVF--TEDDFI----SISKIGGSS------KHGQASKTGRFGVGFNSVYHLT 125
             +L+  D     T++D I    +I+K G S+        G  +  G+ GVGF SVY + 
Sbjct: 472 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQLGVGFYSVYLVA 651

Query: 126 DLPSFVS 132
           D    +S
Sbjct: 652 DYVEVIS 672


>TC7901 homologue to UP|UPT2_SOLTU (Q8RU27) Alpha-1,4-glucan-protein synthase
            [UDP-forming] 2  (UDP-glucose:protein transglucosylase 2)
            (UPTG 2) , partial (92%)
          Length = 1451

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/81 (24%), Positives = 37/81 (44%)
 Frame = -3

Query: 19   DLTRRIREVLLNYPEGTTVLKELIQNADDAGATTVSLCLDRRSHAGDSLLSSSLSQWQGP 78
            DL RR+ +++ ++  G   +  L++     G     L LD       +LL+     W+G 
Sbjct: 1113 DLFRRVVKLIPSFNPGDHSIA*LVE----IGINRAKLLLDLLGEFNVALLNRGAVFWKGS 946

Query: 79   ALLAYNDAVFTEDDFISISKI 99
             L  +ND    ED F+ + ++
Sbjct: 945  RLEKWNDLFLPEDAFVLLLEV 883


>BP054593 
          Length = 507

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 256 IHSCSVSSVSDDTIWHRQAL--LRLSKSLNTTTEVDAFPLEFVTEAVRGVETV 306
           IHS  ++S S + +W++     +RL+K+    T++  FP+E+ +  +   E +
Sbjct: 261 IHSSQINSSSTEVVWNKTLAERVRLTKTWIFPTQIRLFPVEYTSVRLLSNEVI 103


>TC9722 similar to UP|Q9LVD9 (Q9LVD9) Gb|AAC28507.1, partial (16%)
          Length = 571

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = +1

Query: 1793 AYFELSSNRRDIWFGSDMTGGGRKRSDWNIYLLENVVAPAYGRLLEKVALEI-GPCYLFF 1851
            ++ E   +RR      D T G +K+S +    L N   P Y  +LEK    +     LFF
Sbjct: 187  SHLERIGSRR*RKQARD*TSGRKKQSHF*TEKLNNACGPCYSMILEKWQRNVMQRLSLFF 366

Query: 1852 SLWPKTLGLEP------WASVIRKLYQFVAE 1876
            SL      +EP      W  +I  L  FV++
Sbjct: 367  SLGMGLSCIEPCVTMFGWLQLIFTLTHFVSQ 459


>BP053815 
          Length = 456

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 1542 SSLLHFGCDLQHPFPGTLFRFPLRTAGVASRSQIKKEV 1579
            SSLL++ C    P  GT++ FP+R  G     Q+ +EV
Sbjct: 272  SSLLYWSCLFCQP-KGTIYLFPIRCFGTLEYFQVLREV 162


>BP041404 
          Length = 519

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 2289 TRVEF-YKDHIFNRMSEFLLKPEVVSSILNDVQLLIKEDISLK 2330
            T+ +F +  H  N+  + L+KP VVS    D   LIKE+I  K
Sbjct: 323  TKPDFTWATHFANQWKQILIKPHVVSH-YQDASSLIKEEIKFK 448


>AV428070 
          Length = 356

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 1079 SPPFHSLPWPVVSSMVAPPKVVRPPNDLWLVSAGMRILD 1117
            +PP HS P+P+ +    PP    PP +  +++A  R+ D
Sbjct: 64   TPPIHSFPFPIFNQDPPPPP---PPYNPLIMAASRRLRD 171


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,565,241
Number of Sequences: 28460
Number of extensions: 641374
Number of successful extensions: 2903
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2903
length of query: 2349
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2244
effective length of database: 1,909,300
effective search space: 4284469200
effective search space used: 4284469200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)