TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.11
         (176 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV412113                                                              182  4e-47
BP048513                                                               86  5e-18
TC13279 similar to UP|O23322 (O23322) RNA polymerase II FIFTH la...    52  4e-08
TC9560                                                                 32  0.047
AW720394                                                               28  0.89
TC19639 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, p...    27  2.0
BI420202                                                               25  9.8

>AV412113 
          Length = 414

 Score =  182 bits (461), Expect = 4e-47
 Identities = 87/87 (100%), Positives = 87/87 (100%)
 Frame = +3

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR
Sbjct: 153 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 332

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEA 87
           DGTGFVTFPVKYQCVVFRPFKGEILEA
Sbjct: 333 DGTGFVTFPVKYQCVVFRPFKGEILEA 413


>BP048513 
          Length = 362

 Score = 85.5 bits (210), Expect = 5e-18
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -2

Query: 135 KIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           KIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI
Sbjct: 361 KIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 236


>TC13279 similar to UP|O23322 (O23322) RNA polymerase II FIFTH largest
           subunit homolog (RNA polymerase II FIFTH largest subunit
           like protein), partial (57%)
          Length = 446

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
 Frame = +1

Query: 78  RPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQSGDMPNYTTSDGSVKI 136
           R FKGEILE VV  V K G F   GP++ +++SN  + D   F   +   Y  ++ + KI
Sbjct: 13  RLFKGEILEGVVHKVLKHGVFLRCGPIEHVYLSNMKMADYRYFPGENA--YFMNEKASKI 186

Query: 137 QKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173
            KD  +R  +IGT+ ++A   F  + +++ D+LG I  P
Sbjct: 187 AKDVTIRFVVIGTKWMEAEREFQALVSLEGDYLGPIASP 303


>TC9560 
          Length = 609

 Score = 32.3 bits (72), Expect = 0.047
 Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
 Frame = +2

Query: 64  GFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPV-QIFVSNHLIPDDMEFQS 121
           G  T+ V +  ++FRPF+GEI+ A +   ++ G     G    I++  H +P    F++
Sbjct: 5   GAPTYKVVFNLIMFRPFEGEIITAKLLSSDEDGLRLSLGFFDDIYIPAHNLPSPNPFEA 181


>AW720394 
          Length = 587

 Score = 28.1 bits (61), Expect = 0.89
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 29  KLMKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTG 64
           +L+    GT S RHG  V V G+E VG G  + G G
Sbjct: 312 RLLHKFRGT-SQRHGSEVVVDGVEVVGDGEWKSGRG 208


>TC19639 similar to UP|Q8LDQ4 (Q8LDQ4) PP2A regulatory subunit, partial
           (33%)
          Length = 577

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +2

Query: 83  EILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEV 142
           E L+    MVNK+G F+     +   + +L    + F   ++      D  ++I K S+ 
Sbjct: 245 ETLQKCEDMVNKLGLFSANETKEDISTGNLKYILVPFYLAELTEQIAQDDRIQIVKASQA 424

Query: 143 RLKIIGTRVDATEI 156
           +LK   +  +A E+
Sbjct: 425 KLKEFISFCEAMEL 466


>BI420202 
          Length = 621

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 26 LVAKLMKDVEGTCSGR 41
          +  KL+K+ EG+CSGR
Sbjct: 48 IAEKLLKEGEGSCSGR 95


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.144    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,584,068
Number of Sequences: 28460
Number of extensions: 29307
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of query: 176
length of database: 4,897,600
effective HSP length: 84
effective length of query: 92
effective length of database: 2,506,960
effective search space: 230640320
effective search space used: 230640320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)