BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0234.13
(1451 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16645 129 7e-36
BP046665 146 2e-35
TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin... 135 6e-32
BP085968 85 4e-28
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote... 99 2e-27
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p... 81 3e-16
BP046554 82 8e-16
BP065488 69 4e-12
AU089042 67 3e-11
TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protei... 50 3e-06
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%) 34 0.14
TC19226 similar to UP|AAP91821 (AAP91821) HECT ubiquitin-protein... 32 0.72
TC13908 31 1.6
BP054100 28 7.9
>TC16645
Length = 596
Score = 129 bits (325), Expect(2) = 7e-36
Identities = 58/119 (48%), Positives = 84/119 (69%)
Frame = +1
Query: 743 MVANMIYEHGRHLTYAEYPQLFVWHPKDKEWRPRKREFSIGRMNFIPLGCGEVYYLRLLL 802
M AN Y+ GR+LTYAE+P F++H +W P+++ FS+GR+ FI G GE YY+R+LL
Sbjct: 7 MNANKKYQEGRNLTYAEFPSEFLYHQHTTKWVPKQKRFSLGRLPFIAPGMGENYYMRVLL 186
Query: 803 NLQCGCTSYTDLRTVDGVVRVSFQEACSALGLLEDDKEFIDGLIDCAELSGGMSVRKLF 861
+Q GC S+ ++TV GVV +F +AC A+GLLEDD+E++DG+ +E G +RKLF
Sbjct: 187 TMQKGCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRKLF 363
Score = 39.7 bits (91), Expect(2) = 7e-36
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 861 FMVLLLSNSIVTPGKVFEETWRLLADGILYKRRKLL 896
F +L++N I P +V+ ++W LL DGILY RRK L
Sbjct: 362 FTRMLMTNLISRPQEVWRKSWSLLCDGILYDRRKTL 469
>BP046665
Length = 524
Score = 146 bits (369), Expect = 2e-35
Identities = 73/126 (57%), Positives = 93/126 (72%), Gaps = 1/126 (0%)
Frame = -1
Query: 1298 GLPDHRLCLKIGTPIMLMRNIDVSAGLCNGTRLIVLDLRPNLIYGKVLNGNKAGTKTYIP 1357
G+P+H++ LK G PIML+RNI + G CNGTRLIV DL N+I V+ G +IP
Sbjct: 509 GIPNHKITLKEGAPIMLLRNIYQAVGFCNGTRLIVADLGTNVIKATVIT*TNIGDDIFIP 330
Query: 1358 RMTIVPSDSGLHVKVQRRQFPVCVCFAMTINKSQGQTLSRVGVFLPRPVFSHGQLYVAL- 1416
RM +VPSDSG K +RRQFP+ +C AMTINKSQGQ+LS VG++L R VF+HGQLYVAL
Sbjct: 329 RMDMVPSDSGYPFKFERRQFPISLCSAMTINKSQGQSLSHVGLYLSRHVFTHGQLYVALH 150
Query: 1417 SRVKSR 1422
+++K R
Sbjct: 149 AKIKKR 132
>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
protein PIF1, mitochondrial precursor, partial (4%)
Length = 560
Score = 135 bits (339), Expect = 6e-32
Identities = 69/118 (58%), Positives = 84/118 (70%)
Frame = +1
Query: 1324 LCNGTRLIVLDLRPNLIYGKVLNGNKAGTKTYIPRMTIVPSDSGLHVKVQRRQFPVCVCF 1383
LCNGTRLIV+DL +I V+ G G +IPR+ +VPSDSG K +RR FP+ +CF
Sbjct: 61 LCNGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 240
Query: 1384 AMTINKSQGQTLSRVGVFLPRPVFSHGQLYVALSRVKSRDGLKIYVDQTEVPPLEHTK 1441
AMTINKSQGQ+LS V ++L RPVF+HGQLYVALSRV+SR GLK+ V E TK
Sbjct: 241 AMTINKSQGQSLSHVSLYLSRPVFTHGQLYVALSRVRSRKGLKLLVLDEEEKVTNTTK 414
>BP085968
Length = 341
Score = 84.7 bits (208), Expect(2) = 4e-28
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +2
Query: 975 QRKVYDEVIDAVNKSDGGFYFVYGSGGTGKTFLWKTLSYRLRSERKIVLNVASSGITSLL 1034
Q KVY +++ +V DGGFYF+YG GG+GKTF+W T S LRS+ +VLNVASSGI S L
Sbjct: 20 QSKVYKQIMSSVWSDDGGFYFLYGFGGSGKTFVWNTWSSGLRSQGLMVLNVASSGIASWL 199
Query: 1035 LPGGR 1039
LPGG+
Sbjct: 200 LPGGK 214
Score = 58.5 bits (140), Expect(2) = 4e-28
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +3
Query: 1039 RTAHSLFSIPLVLNEDSCCNIRLGSNKAELLKHTSLIIWDEAP 1081
RTAHS FSI + +N+ S CNI+ GS KAELL+ S IIWDEAP
Sbjct: 213 RTAHSRFSIHISINDISTCNIKQGSQKAELLQKASSIIWDEAP 341
>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
(8%)
Length = 634
Score = 99.4 bits (246), Expect(2) = 2e-27
Identities = 53/98 (54%), Positives = 65/98 (66%)
Frame = +2
Query: 1344 VLNGNKAGTKTYIPRMTIVPSDSGLHVKVQRRQFPVCVCFAMTINKSQGQTLSRVGVFLP 1403
V+ G G IPRM +VPSDS K +RRQ P+ +CFAMTINKSQG++LS VG++L
Sbjct: 149 VITGTHIGDDISIPRMDMVPSDSSYPFKFERRQSPISLCFAMTINKSQGRSLSHVGLYLS 328
Query: 1404 RPVFSHGQLYVALSRVKSRDGLKIYVDQTEVPPLEHTK 1441
RPV +HG LYVAL RV+SR LK+ V E TK
Sbjct: 329 RPVSTHG*LYVALPRVRSRK*LKLLVLDEEEKMTNTTK 442
Score = 42.0 bits (97), Expect(2) = 2e-27
Identities = 21/32 (65%), Positives = 25/32 (77%)
Frame = +1
Query: 1307 KIGTPIMLMRNIDVSAGLCNGTRLIVLDLRPN 1338
K G IML+RNI ++GLCNGTRLIV+DL N
Sbjct: 43 KEGALIMLLRNIVQASGLCNGTRLIVVDLGIN 138
>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
DMC1/LIM15 homolog, partial (12%)
Length = 628
Score = 81.3 bits (199), Expect(2) = 3e-16
Identities = 39/69 (56%), Positives = 49/69 (70%)
Frame = +1
Query: 1324 LCNGTRLIVLDLRPNLIYGKVLNGNKAGTKTYIPRMTIVPSDSGLHVKVQRRQFPVCVCF 1383
LC+GTRLIV+DL +I V+ G G +IPR+ +VPSDSG K +RR FP+ +CF
Sbjct: 169 LCHGTRLIVVDLGTYVIKATVITGTNIGDDIFIPRLDMVPSDSGYPFKFERR*FPISLCF 348
Query: 1384 AMTINKSQG 1392
AMTINKSQG
Sbjct: 349 AMTINKSQG 375
Score = 21.9 bits (45), Expect(2) = 3e-16
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 1417 SRVKSRDGLKIYVDQTEVPPLEHTK 1441
SRV+SR GLK+ V E TK
Sbjct: 369 SRVRSRKGLKLLVLDEEEKVTNTTK 443
>BP046554
Length = 556
Score = 81.6 bits (200), Expect = 8e-16
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = -3
Query: 387 EEAMEKGDVDSASVGTRIVLPSSFTGGRRYM-FNNCQDAMAICKHVGYPDLFITVTCNPK 445
EEA++KG+ + +SVG+ + P + I K GYPDLFIT TCN
Sbjct: 392 EEAIDKGETNPSSVGSELFCPHLLLVDIAICSIISRMQWPCIFKKFGYPDLFITFTCNSA 213
Query: 446 WLEIQRCVSEKGLNAYDRPDISCRVFHIKVKQLMRDLRKGQYFGKVSAGMYTIEF 500
W EIQR V + LN D P+I RVF +K+ +L+ DL+KG+ FG A + +F
Sbjct: 212 WCEIQRFVQPRNLNVEDCPNICVRVFKMKLDRLISDLKKGKIFGASDAVRHIHDF 48
>BP065488
Length = 439
Score = 69.3 bits (168), Expect = 4e-12
Identities = 41/81 (50%), Positives = 52/81 (63%), Gaps = 2/81 (2%)
Frame = -1
Query: 1351 GTKTYIPRMTIVPSDSGLHVKVQRRQFPVCVCFAMTINKSQGQT-LSRVGVFLPRPVFSH 1409
G +IPRM +VPS SG +K +R QFP+ +CFAMTINKSQ V + +SH
Sbjct: 379 GDDIFIPRMNMVPSVSGDPLKFERCQFPISLCFAMTINKSQXSVHYPTVALISFLACYSH 200
Query: 1410 -GQLYVALSRVKSRDGLKIYV 1429
+LYVALS V+SR GLK+ V
Sbjct: 199 MDKLYVALSGVRSRKGLKLLV 137
>AU089042
Length = 191
Score = 66.6 bits (161), Expect = 3e-11
Identities = 32/60 (53%), Positives = 39/60 (64%)
Frame = +3
Query: 1306 LKIGTPIMLMRNIDVSAGLCNGTRLIVLDLRPNLIYGKVLNGNKAGTKTYIPRMTIVPSD 1365
LK G P+MLM N+ +S GLCNGTRLIV L PN+I +L+G G YI M + PSD
Sbjct: 9 LKXGVPVMLMXNLXISTGLCNGTRLIVDYLGPNVIGATILSGTHIGXVVYISMMNLXPSD 188
>TC11129 weakly similar to UP|PDA6_MEDSA (P38661) Probable protein disulfide
isomerase A6 precursor (P5) , partial (7%)
Length = 600
Score = 50.1 bits (118), Expect = 3e-06
Identities = 23/61 (37%), Positives = 36/61 (58%), Gaps = 7/61 (11%)
Frame = +2
Query: 1234 YFIDKAILA-------PTLDIVDSVNQFVLSIVPGKEKVYLSSDSVVKVDEDVAIDANWI 1286
Y+ D +++ PTL+ V+ VN+F+L ++PG YLSSD+ K DED + + W
Sbjct: 410 YYADGGVISLVMY*IFPTLESVEKVNEFMLDLLPGNTTEYLSSDTTCKYDEDTELQS*WF 589
Query: 1287 T 1287
T
Sbjct: 590 T 592
>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
Length = 613
Score = 34.3 bits (77), Expect = 0.14
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 1412 LYVALSRVKSRDGLKIYV--DQTEVPPLEHT---KMLFTKKYS 1449
LYVA+SRVKS+DGLKI + D T P K +F K YS
Sbjct: 2 LYVAVSRVKSKDGLKILISSDGTSTPGATKNIVYKEVFQKIYS 130
>TC19226 similar to UP|AAP91821 (AAP91821) HECT ubiquitin-protein ligase 3,
partial (6%)
Length = 553
Score = 32.0 bits (71), Expect = 0.72
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = -2
Query: 677 YYDCRYLSACEAAWRSFSFRIHDHWPPVQRLP 708
Y D Y ++AW FRI +H+P +Q +P
Sbjct: 546 YQDLSYHCEGDSAWSEMMFRIQNHYPSLQMMP 451
>TC13908
Length = 472
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Frame = -1
Query: 434 PDLFITVTCNPKWLEIQRCVSE----KGLNAYDRPDISCRVFHIKVKQLMRDLR 483
P+LF T++ PKW + C+S GL + D F +K + L+ LR
Sbjct: 334 PNLFFTISL*PKWFSVLNCISTVQKISGLPCFTTTD-----FTVKCQGLINSLR 188
>BP054100
Length = 464
Score = 28.5 bits (62), Expect = 7.9
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Frame = -3
Query: 546 VVSMFMVHGPCGS-SRKNSPCMVNGRCSKFFP 576
+V + +VH C + SR N PC GRC P
Sbjct: 270 LVCLLLVHPSCSTCSR*NQPCPCRGRCRSAVP 175
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.141 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,135,000
Number of Sequences: 28460
Number of extensions: 382440
Number of successful extensions: 1801
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of query: 1451
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1349
effective length of database: 1,994,680
effective search space: 2690823320
effective search space used: 2690823320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0234.13